Wall clock time and date at job start Tue Mar 31 2020 22:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13590 * 1 3 3 C 1.43206 * 179.97438 * 2 1 4 4 C 1.39679 * 120.11954 * 320.40663 * 3 2 1 5 5 C 1.37973 * 119.98495 * 179.97438 * 4 3 2 6 6 C 1.38259 * 120.22313 * 0.02562 * 5 4 3 7 7 C 1.38946 * 120.24116 * 359.71421 * 6 5 4 8 8 N 1.40137 * 119.99910 * 180.30636 * 7 6 5 9 9 C 1.35859 * 124.95782 * 359.97438 * 8 7 6 10 10 C 1.35347 * 107.12700 * 179.86969 * 9 8 7 11 11 C 1.41539 * 105.55396 * 0.37551 * 10 9 8 12 12 C 1.47671 * 126.44159 * 179.72531 * 11 10 9 13 13 O 1.21581 * 120.00024 * 0.02562 * 12 11 10 14 14 N 1.34772 * 119.99729 * 180.02562 * 12 11 10 15 15 C 1.46507 * 119.99733 * 180.02562 * 14 12 11 16 16 C 1.50700 * 109.46781 * 179.97438 * 15 14 12 17 17 O 1.21286 * 120.00514 * 359.97438 * 16 15 14 18 18 N 1.34782 * 119.99739 * 179.97438 * 16 15 14 19 19 C 1.37094 * 119.99701 * 179.97438 * 18 16 15 20 20 H 1.07990 * 120.00575 * 0.02562 * 19 18 16 21 21 C 1.38956 * 119.99728 * 180.02562 * 19 18 16 22 22 N 1.31412 * 119.99731 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00221 * 180.02562 * 21 19 18 24 24 H 1.48494 * 109.47567 * 89.99410 * 23 21 19 25 25 H 1.48499 * 109.47040 * 209.99849 * 23 21 19 26 26 H 1.48506 * 109.46771 * 329.99695 * 23 21 19 27 27 N 1.28472 * 124.96252 * 180.27717 * 8 7 6 28 28 C 1.38604 * 120.00789 * 0.56192 * 7 6 5 29 29 H 1.07998 * 120.00760 * 0.02562 * 4 3 2 30 30 H 1.07999 * 119.89004 * 180.02562 * 5 4 3 31 31 H 1.08002 * 119.88054 * 180.02562 * 6 5 4 32 32 H 1.08002 * 126.43388 * 359.97438 * 9 8 7 33 33 H 1.08001 * 127.22627 * 180.13462 * 10 9 8 34 34 H 0.97001 * 120.00188 * 359.97438 * 14 12 11 35 35 H 1.09001 * 109.46865 * 299.99285 * 15 14 12 36 36 H 1.08994 * 109.47108 * 59.99438 * 15 14 12 37 37 H 0.97004 * 119.99897 * 0.02562 * 18 16 15 38 38 H 0.97008 * 119.99828 * 179.97438 * 22 21 19 39 39 H 1.08002 * 120.11476 * 179.72414 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1359 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2693 -0.9301 0.7700 5 6 4.6490 -0.9273 0.7675 6 6 5.3417 -0.0051 0.0051 7 6 4.6535 0.9214 -0.7685 8 7 5.3608 1.8496 -1.5444 9 6 6.7149 1.9340 -1.6150 10 6 7.0074 2.9461 -2.4647 11 6 5.7582 3.4612 -2.8858 12 6 5.5423 4.5858 -3.8182 13 8 6.4950 5.1643 -4.3039 14 7 4.2892 4.9710 -4.1307 15 6 4.0750 6.0864 -5.0561 16 6 2.5960 6.3127 -5.2362 17 8 1.7992 5.6112 -4.6496 18 7 2.1586 7.2949 -6.0490 19 6 0.8132 7.5004 -6.2132 20 1 0.1038 6.8758 -5.6910 21 6 0.3623 8.5126 -7.0517 22 7 1.2256 9.2731 -7.6868 23 14 -1.4709 8.7933 -7.2749 24 1 -1.9510 9.7622 -6.2571 25 1 -1.7269 9.3351 -8.6336 26 1 -2.1923 7.5056 -7.1114 27 7 4.8235 2.7486 -2.2884 28 6 3.2675 0.9311 -0.7689 29 1 2.7317 -1.6522 1.3666 30 1 5.1897 -1.6479 1.3632 31 1 6.4218 -0.0082 0.0070 32 1 7.4246 1.3096 -1.0927 33 1 7.9883 3.2911 -2.7569 34 1 3.5290 4.5092 -3.7434 35 1 4.5342 6.9880 -4.6508 36 1 4.5261 5.8506 -6.0199 37 1 2.7959 7.8557 -6.5184 38 1 0.9108 9.9795 -8.2724 39 1 2.7309 1.6534 -1.3662 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344108602.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:31 Heat of formation + Delta-G solvation = 49.644974 kcal Electronic energy + Delta-G solvation = -26529.502356 eV Core-core repulsion = 22438.513914 eV Total energy + Delta-G solvation = -4090.988442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.97731 -40.97023 -40.41524 -39.77783 -37.69218 -36.30223 -35.39377 -34.76443 -33.41496 -32.79713 -31.69114 -30.84234 -29.28907 -26.75691 -25.35485 -25.25670 -22.98492 -22.59320 -21.42797 -21.12371 -20.30629 -20.08629 -18.94038 -17.84160 -17.38099 -17.35647 -17.26296 -16.92889 -16.63883 -16.53051 -16.34229 -15.76249 -15.44809 -15.16671 -15.14708 -14.97056 -14.66087 -14.41238 -14.07804 -14.00134 -13.87877 -13.71104 -13.58181 -13.44466 -12.94184 -12.78173 -12.55496 -12.49449 -12.15638 -11.97014 -11.61067 -11.44301 -11.27263 -10.61313 -10.34793 -10.28121 -10.14689 -10.12151 -9.38256 -8.54227 -6.04433 -0.49624 -0.21506 0.62585 1.20700 1.22556 1.33175 1.39650 1.52045 1.54398 1.85916 1.86508 1.97346 2.27046 2.28687 2.67167 2.75768 3.06344 3.12508 3.22069 3.68660 3.77667 3.88470 3.95278 4.08640 4.19932 4.27167 4.36972 4.38929 4.47444 4.63931 4.70311 4.77245 5.00613 5.13544 5.16012 5.22751 5.33497 5.35200 5.55480 5.87998 5.94995 6.30824 6.31857 6.45562 6.75149 6.99665 7.02056 7.39974 7.91503 8.62675 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.011188 B = 0.002416 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2502.054479 B =11587.105699 C =14074.004492 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C 0.273 3.727 3 C -0.020 4.020 4 C -0.054 4.054 5 C -0.077 4.077 6 C -0.076 4.076 7 C 0.112 3.888 8 N -0.236 5.236 9 C 0.011 3.989 10 C -0.180 4.180 11 C -0.028 4.028 12 C 0.601 3.399 13 O -0.562 6.562 14 N -0.699 5.699 15 C 0.120 3.880 16 C 0.430 3.570 17 O -0.627 6.627 18 N -0.557 5.557 19 C -0.339 4.339 20 H 0.083 0.917 21 C -0.009 4.009 22 N -0.913 5.913 23 Si 0.996 3.004 24 H -0.270 1.270 25 H -0.268 1.268 26 H -0.273 1.273 27 N -0.288 5.288 28 C -0.082 4.082 29 H 0.167 0.833 30 H 0.195 0.805 31 H 0.183 0.817 32 H 0.247 0.753 33 H 0.183 0.817 34 H 0.413 0.587 35 H 0.102 0.898 36 H 0.102 0.898 37 H 0.400 0.600 38 H 0.281 0.719 39 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.611 -22.781 18.880 33.932 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.137 5.137 2 C -0.042 4.042 3 C -0.024 4.024 4 C -0.075 4.075 5 C -0.095 4.095 6 C -0.096 4.096 7 C 0.022 3.978 8 N -0.018 5.018 9 C -0.128 4.128 10 C -0.208 4.208 11 C -0.188 4.188 12 C 0.387 3.613 13 O -0.439 6.439 14 N -0.352 5.352 15 C -0.007 4.007 16 C 0.217 3.783 17 O -0.515 6.515 18 N -0.192 5.192 19 C -0.468 4.468 20 H 0.101 0.899 21 C -0.210 4.210 22 N -0.553 5.553 23 Si 0.819 3.181 24 H -0.195 1.195 25 H -0.193 1.193 26 H -0.198 1.198 27 N -0.122 5.122 28 C -0.105 4.105 29 H 0.185 0.815 30 H 0.212 0.788 31 H 0.201 0.799 32 H 0.263 0.737 33 H 0.200 0.800 34 H 0.251 0.749 35 H 0.120 0.880 36 H 0.120 0.880 37 H 0.235 0.765 38 H 0.090 0.910 39 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 13.762 -22.761 18.861 32.606 hybrid contribution -0.245 1.135 -0.931 1.488 sum 13.517 -21.626 17.930 31.175 Atomic orbital electron populations 1.81318 1.13707 1.09172 1.09522 1.25983 0.92988 0.92627 0.92611 1.15788 0.83136 1.00432 1.03035 1.21744 0.95478 0.95364 0.94894 1.21497 0.92540 0.97968 0.97521 1.21637 1.03040 0.91776 0.93174 1.17728 0.90564 0.92663 0.96881 1.42967 1.05970 1.22202 1.30677 1.23828 0.84091 1.02035 1.02859 1.22143 0.98504 0.98742 1.01374 1.21889 0.93115 1.00164 1.03648 1.17159 0.82265 0.81880 0.80036 1.90759 1.41743 1.56494 1.54924 1.45644 1.08605 1.34422 1.46528 1.20883 0.92766 0.91425 0.95628 1.20434 0.90743 0.83495 0.83581 1.90490 1.57697 1.50610 1.52692 1.41813 1.07997 1.29437 1.39982 1.19706 0.83251 1.16646 1.27199 0.89925 1.26115 1.04782 0.94933 0.95149 1.69675 1.36407 1.20138 1.29097 0.84884 0.76513 0.78529 0.78143 1.19488 1.19283 1.19771 1.73585 1.27496 1.02833 1.08301 1.20841 0.92930 0.98329 0.98402 0.81498 0.78791 0.79950 0.73703 0.79984 0.74889 0.88005 0.88019 0.76509 0.90952 0.86223 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -12.64 18.54 19.00 0.35 -12.28 16 2 C 0.27 5.64 15.33 88.33 1.35 6.99 16 3 C -0.02 -0.27 5.73 -21.38 -0.12 -0.39 16 4 C -0.05 -0.22 9.75 22.56 0.22 0.00 16 5 C -0.08 0.09 10.02 22.21 0.22 0.31 16 6 C -0.08 -0.17 9.43 22.44 0.21 0.04 16 7 C 0.11 1.46 6.65 38.07 0.25 1.72 16 8 N -0.24 -4.34 3.52 -187.41 -0.66 -5.00 16 9 C 0.01 0.13 10.78 83.40 0.90 1.03 16 10 C -0.18 -3.56 10.80 22.42 0.24 -3.32 16 11 C -0.03 -0.82 7.13 42.45 0.30 -0.52 16 12 C 0.60 21.17 7.82 86.74 0.68 21.85 16 13 O -0.56 -21.62 16.92 -3.97 -0.07 -21.69 16 14 N -0.70 -26.40 5.52 -469.86 -2.60 -28.99 16 15 C 0.12 4.69 6.15 85.63 0.53 5.22 16 16 C 0.43 21.08 7.85 87.66 0.69 21.77 16 17 O -0.63 -34.87 15.24 -3.05 -0.05 -34.92 16 18 N -0.56 -29.04 5.29 -306.99 -1.62 -30.66 16 19 C -0.34 -19.35 9.68 84.04 0.81 -18.54 16 20 H 0.08 5.01 7.16 -2.92 -0.02 4.99 16 21 C -0.01 -0.47 5.50 84.93 0.47 -0.01 16 22 N -0.91 -49.40 13.05 21.67 0.28 -49.12 16 23 Si 1.00 43.14 29.55 68.60 2.03 45.17 16 24 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 25 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 26 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 27 N -0.29 -7.96 10.84 -48.16 -0.52 -8.48 16 28 C -0.08 -1.44 9.30 22.67 0.21 -1.23 16 29 H 0.17 -0.13 8.06 -2.91 -0.02 -0.15 16 30 H 0.19 -1.83 8.06 -2.91 -0.02 -1.85 16 31 H 0.18 -1.03 6.63 -2.91 -0.02 -1.05 16 32 H 0.25 -0.27 6.95 -2.91 -0.02 -0.29 16 33 H 0.18 2.98 8.06 -2.91 -0.02 2.96 16 34 H 0.41 16.47 7.16 -92.71 -0.66 15.81 16 35 H 0.10 3.68 8.14 -2.39 -0.02 3.67 16 36 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 37 H 0.40 19.83 7.90 -92.71 -0.73 19.09 16 38 H 0.28 14.16 8.31 -92.70 -0.77 13.39 16 39 H 0.12 2.86 7.64 -2.91 -0.02 2.84 16 Total: -1.00 -83.94 363.91 3.88 -80.06 By element: Atomic # 1 Polarization: 31.23 SS G_CDS: -0.24 Total: 30.99 kcal Atomic # 6 Polarization: 27.96 SS G_CDS: 6.97 Total: 34.93 kcal Atomic # 7 Polarization: -129.77 SS G_CDS: -4.76 Total: -134.53 kcal Atomic # 8 Polarization: -56.50 SS G_CDS: -0.11 Total: -56.61 kcal Atomic # 14 Polarization: 43.14 SS G_CDS: 2.03 Total: 45.17 kcal Total: -83.94 3.88 -80.06 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344108602.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.701 kcal (2) G-P(sol) polarization free energy of solvation -83.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.645 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds