Wall clock time and date at job start Tue Mar 31 2020 22:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52997 * 109.47262 * 2 1 4 4 H 1.09004 * 109.46812 * 304.99956 * 3 2 1 5 5 N 1.46498 * 109.47036 * 65.00021 * 3 2 1 6 6 C 1.34777 * 119.99828 * 274.72131 * 5 3 2 7 7 O 1.21593 * 119.99949 * 0.28071 * 6 5 3 8 8 N 1.34777 * 120.00128 * 180.27942 * 6 5 3 9 9 C 1.46499 * 120.00065 * 180.02562 * 8 6 5 10 10 C 1.50703 * 109.47138 * 179.97438 * 9 8 6 11 11 O 1.21294 * 119.99626 * 0.02562 * 10 9 8 12 12 N 1.34775 * 120.00072 * 179.97438 * 10 9 8 13 13 C 1.37097 * 120.00087 * 179.97438 * 12 10 9 14 14 H 1.08001 * 120.00028 * 0.02562 * 13 12 10 15 15 C 1.38951 * 120.00330 * 179.97438 * 13 12 10 16 16 N 1.31408 * 119.99464 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00303 * 180.02562 * 15 13 12 18 18 H 1.48496 * 109.47001 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.47080 * 120.00010 * 17 15 13 20 20 H 1.48497 * 109.47104 * 240.00317 * 17 15 13 21 21 C 1.50701 * 109.47247 * 185.00035 * 3 2 1 22 22 C 1.38263 * 119.98843 * 279.72519 * 21 3 2 23 23 C 1.38227 * 120.01997 * 179.76631 * 22 21 3 24 24 C 1.38236 * 120.01539 * 0.50847 * 23 22 21 25 25 C 1.38333 * 119.98423 * 359.74390 * 24 23 22 26 26 Cl 1.73596 * 120.01073 * 180.02562 * 25 24 23 27 27 C 1.38190 * 119.99474 * 99.99506 * 21 3 2 28 28 H 1.09000 * 109.47004 * 300.00349 * 1 2 3 29 29 H 1.08997 * 109.46461 * 60.00164 * 1 2 3 30 30 H 1.09000 * 109.46616 * 180.02562 * 1 2 3 31 31 H 1.09000 * 109.47004 * 239.99651 * 2 1 3 32 32 H 1.09005 * 109.47038 * 120.00011 * 2 1 3 33 33 H 0.97001 * 120.00384 * 95.00578 * 5 3 2 34 34 H 0.97000 * 119.99549 * 359.97438 * 8 6 5 35 35 H 1.09000 * 109.47602 * 299.99940 * 9 8 6 36 36 H 1.09006 * 109.46868 * 59.99976 * 9 8 6 37 37 H 0.97002 * 120.00040 * 0.02562 * 12 10 9 38 38 H 0.97001 * 120.00017 * 179.97438 * 16 15 13 39 39 H 1.08000 * 119.99373 * 359.97438 * 22 21 3 40 40 H 1.08004 * 119.99004 * 180.25048 * 23 22 21 41 41 H 1.07995 * 120.00700 * 179.72380 * 24 23 22 42 42 H 1.08003 * 120.00598 * 0.02562 * 27 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8419 5 7 1.6525 2.0974 1.2518 6 6 0.4374 2.6692 1.3650 7 8 -0.3392 2.6370 0.4299 8 7 0.0829 3.2767 2.5147 9 6 -1.2382 3.8978 2.6379 10 6 -1.3832 4.5019 4.0109 11 8 -0.4723 4.4220 4.8079 12 7 -2.5245 5.1319 4.3529 13 6 -2.6566 5.6811 5.6021 14 1 -1.8459 5.6092 6.3120 15 6 -3.8330 6.3311 5.9545 16 7 -4.8192 6.4190 5.0905 17 14 -4.0127 7.0799 7.6564 18 1 -2.7691 6.8467 8.4336 19 1 -4.2515 8.5403 7.5319 20 1 -5.1602 6.4486 8.3563 21 6 3.5420 1.4443 -0.1238 22 6 4.3275 1.2086 0.9893 23 6 5.7051 1.2053 0.8755 24 6 6.2983 1.4481 -0.3492 25 6 5.5129 1.6891 -1.4622 26 17 6.2572 1.9933 -3.0007 27 6 4.1339 1.6870 -1.3487 28 1 -0.3633 0.5139 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 -0.3632 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8900 32 1 1.8934 -0.5139 0.8900 33 1 2.2720 2.1232 1.9978 34 1 0.7023 3.3020 3.2608 35 1 -1.3447 4.6780 1.8842 36 1 -2.0100 3.1423 2.4904 37 1 -3.2528 5.1962 3.7154 38 1 -5.6407 6.8724 5.3365 39 1 3.8646 1.0237 1.9474 40 1 6.3181 1.0171 1.7446 41 1 7.3747 1.4499 -0.4371 42 1 3.5202 1.8758 -2.2172 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344284907.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:53 Heat of formation + Delta-G solvation = -55.859824 kcal Electronic energy + Delta-G solvation = -25963.863900 eV Core-core repulsion = 21969.407921 eV Total energy + Delta-G solvation = -3994.455979 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.57462 -39.48196 -38.25732 -36.97954 -35.92390 -34.39362 -33.69185 -32.24719 -31.47606 -31.36634 -30.98551 -27.71194 -26.11969 -24.40368 -23.23523 -22.57284 -21.27664 -20.37393 -19.58689 -18.61362 -18.07103 -17.40212 -16.47190 -15.93250 -15.78788 -15.54178 -15.44023 -14.76685 -14.58634 -14.43961 -14.28144 -14.00664 -13.91893 -13.85960 -13.41327 -13.27719 -12.77841 -12.41911 -12.18882 -11.96255 -11.89613 -11.76914 -11.64287 -11.55850 -11.50191 -11.15263 -11.04704 -10.90640 -10.41668 -10.33309 -10.00345 -9.65318 -9.38839 -9.14818 -9.05012 -8.64065 -8.63175 -8.10600 -6.52088 -3.94038 0.71227 0.81408 1.72856 2.75876 3.09633 3.20021 3.22098 3.28683 3.38395 3.74574 4.08077 4.13326 4.38309 4.41405 4.61488 4.74829 4.88858 4.89471 4.95120 5.01699 5.16693 5.16930 5.33831 5.45815 5.54986 5.72421 5.79344 5.88330 5.89919 5.93656 5.99899 6.01331 6.07552 6.11376 6.34165 6.45165 6.51175 6.75299 7.05131 7.45640 7.92082 8.20356 8.44550 8.77516 9.04242 9.39079 9.86825 10.64865 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.020875 B = 0.001914 C = 0.001851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.018784 B =14624.196264 C =15123.841873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.206 3.794 4 H 0.100 0.900 5 N -0.744 5.744 6 C 0.706 3.294 7 O -0.590 6.590 8 N -0.724 5.724 9 C 0.129 3.871 10 C 0.428 3.572 11 O -0.598 6.598 12 N -0.549 5.549 13 C -0.304 4.304 14 H 0.106 0.894 15 C 0.025 3.975 16 N -0.894 5.894 17 Si 0.932 3.068 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.075 4.075 22 C -0.108 4.108 23 C -0.102 4.102 24 C -0.112 4.112 25 C -0.031 4.031 26 Cl -0.070 7.070 27 C -0.098 4.098 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.395 0.605 34 H 0.406 0.594 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.396 0.604 38 H 0.274 0.726 39 H 0.130 0.870 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.908 -12.365 -12.837 25.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.166 4.166 3 C 0.100 3.900 4 H 0.118 0.882 5 N -0.400 5.400 6 C 0.406 3.594 7 O -0.469 6.469 8 N -0.382 5.382 9 C 0.001 3.999 10 C 0.214 3.786 11 O -0.485 6.485 12 N -0.184 5.184 13 C -0.434 4.434 14 H 0.124 0.876 15 C -0.178 4.178 16 N -0.534 5.534 17 Si 0.759 3.241 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.076 4.076 22 C -0.127 4.127 23 C -0.120 4.120 24 C -0.131 4.131 25 C -0.058 4.058 26 Cl -0.042 7.042 27 C -0.118 4.118 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.230 0.770 34 H 0.243 0.757 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.230 0.770 38 H 0.084 0.916 39 H 0.148 0.852 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 18.615 -12.293 -13.265 25.954 hybrid contribution 0.057 0.529 1.005 1.137 sum 18.673 -11.764 -12.260 25.246 Atomic orbital electron populations 1.21794 0.94103 1.00489 1.03730 1.21965 0.97557 0.94904 1.02215 1.19669 0.88435 0.94016 0.87848 0.88184 1.45162 1.16532 1.61687 1.16663 1.15773 0.81958 0.78340 0.83301 1.90920 1.51688 1.65346 1.38903 1.44782 1.18554 1.59546 1.15288 1.20777 0.84202 0.97939 0.96987 1.19777 0.84742 0.85207 0.88869 1.90491 1.40785 1.64538 1.52689 1.41797 1.13910 1.47672 1.15047 1.19770 1.01492 1.31578 0.90523 0.87648 1.25330 0.95118 0.97447 0.99898 1.69621 1.05590 1.42861 1.35363 0.85758 0.78520 0.78495 0.81312 1.19153 1.20621 1.20622 1.19943 0.95414 0.99084 0.93164 1.21098 0.93741 0.99222 0.98591 1.21129 0.94770 0.98973 0.97158 1.21096 1.00291 1.00199 0.91508 1.20893 0.93098 1.04394 0.87413 1.98382 1.82495 1.94287 1.28992 1.20902 0.92681 0.99985 0.98183 0.91877 0.92001 0.93697 0.91207 0.91759 0.77015 0.75679 0.90011 0.90019 0.77017 0.91641 0.85233 0.84781 0.84905 0.84571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.68 8.52 37.16 0.32 -1.37 16 2 C -0.13 -1.20 5.59 -26.73 -0.15 -1.35 16 3 C 0.21 2.04 2.46 -69.08 -0.17 1.87 16 4 H 0.10 1.14 7.43 -51.93 -0.39 0.76 16 5 N -0.74 -8.29 4.98 -59.81 -0.30 -8.59 16 6 C 0.71 10.64 7.14 -86.92 -0.62 10.02 16 7 O -0.59 -10.43 13.49 5.28 0.07 -10.36 16 8 N -0.72 -11.65 5.53 -66.41 -0.37 -12.02 16 9 C 0.13 2.34 6.15 -5.19 -0.03 2.31 16 10 C 0.43 9.68 7.85 -10.98 -0.09 9.59 16 11 O -0.60 -15.07 15.24 5.55 0.08 -14.99 16 12 N -0.55 -13.49 5.29 -10.96 -0.06 -13.55 16 13 C -0.30 -8.20 9.68 -14.93 -0.14 -8.35 16 14 H 0.11 2.97 7.16 -52.49 -0.38 2.59 16 15 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 16 N -0.89 -23.76 13.05 55.50 0.72 -23.04 16 17 Si 0.93 20.42 29.55 -169.99 -5.02 15.40 16 18 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.28 -6.05 7.11 56.52 0.40 -5.65 16 21 C -0.08 -0.64 4.96 -104.63 -0.52 -1.16 16 22 C -0.11 -0.79 9.06 -39.58 -0.36 -1.15 16 23 C -0.10 -0.67 10.05 -39.59 -0.40 -1.07 16 24 C -0.11 -0.81 9.83 -39.55 -0.39 -1.20 16 25 C -0.03 -0.26 6.32 -39.50 -0.25 -0.51 16 26 Cl -0.07 -0.57 28.96 -51.86 -1.50 -2.08 16 27 C -0.10 -0.84 9.45 -39.55 -0.37 -1.21 16 28 H 0.06 0.89 5.66 -51.93 -0.29 0.60 16 29 H 0.06 0.79 7.85 -51.93 -0.41 0.38 16 30 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.39 3.61 6.87 -40.82 -0.28 3.33 16 34 H 0.41 6.39 7.45 -40.82 -0.30 6.09 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.01 16 36 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.40 9.37 7.90 -40.82 -0.32 9.04 16 38 H 0.27 6.85 8.31 -40.82 -0.34 6.51 16 39 H 0.13 0.78 6.90 -52.49 -0.36 0.41 16 40 H 0.13 0.59 8.06 -52.48 -0.42 0.17 16 41 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.14 1.05 8.04 -52.48 -0.42 0.63 16 LS Contribution 370.35 15.07 5.58 5.58 Total: -1.00 -30.92 370.35 -9.30 -40.22 By element: Atomic # 1 Polarization: 21.68 SS G_CDS: -5.25 Total: 16.43 kcal Atomic # 6 Polarization: 10.26 SS G_CDS: -3.27 Total: 6.99 kcal Atomic # 7 Polarization: -57.20 SS G_CDS: 0.00 Total: -57.20 kcal Atomic # 8 Polarization: -25.50 SS G_CDS: 0.16 Total: -25.35 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.92 -9.30 -40.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344284907.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.636 kcal (2) G-P(sol) polarization free energy of solvation -30.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.224 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.860 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds