Wall clock time and date at job start Tue Mar 31 2020 22:57:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52999 * 109.47169 * 2 1 4 4 H 1.09004 * 109.47268 * 54.99785 * 3 2 1 5 5 N 1.46505 * 109.47037 * 294.99952 * 3 2 1 6 6 C 1.34776 * 119.99776 * 85.00187 * 5 3 2 7 7 O 1.21583 * 120.00276 * 359.97438 * 6 5 3 8 8 N 1.34775 * 119.99496 * 180.02562 * 6 5 3 9 9 C 1.46506 * 119.99657 * 179.97438 * 8 6 5 10 10 C 1.50704 * 109.46947 * 179.97438 * 9 8 6 11 11 O 1.21292 * 120.00099 * 0.02562 * 10 9 8 12 12 N 1.34771 * 119.99760 * 180.02562 * 10 9 8 13 13 C 1.37108 * 119.99778 * 180.02562 * 12 10 9 14 14 H 1.07993 * 120.00156 * 0.02562 * 13 12 10 15 15 C 1.38953 * 119.99510 * 180.02562 * 13 12 10 16 16 N 1.31407 * 120.00489 * 0.02562 * 15 13 12 17 17 Si 1.86798 * 119.99497 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.47391 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47146 * 120.00000 * 17 15 13 20 20 H 1.48496 * 109.47263 * 240.00061 * 17 15 13 21 21 C 1.50699 * 109.47180 * 175.00144 * 3 2 1 22 22 C 1.38265 * 119.98996 * 259.99855 * 21 3 2 23 23 C 1.38225 * 120.02460 * 179.97438 * 22 21 3 24 24 C 1.38234 * 120.01137 * 0.02562 * 23 22 21 25 25 C 1.38325 * 119.98838 * 359.97438 * 24 23 22 26 26 Cl 1.73601 * 120.01311 * 180.02562 * 25 24 23 27 27 C 1.38186 * 119.99683 * 79.97442 * 21 3 2 28 28 H 1.09003 * 109.46779 * 300.00363 * 1 2 3 29 29 H 1.09001 * 109.47140 * 60.00099 * 1 2 3 30 30 H 1.09000 * 109.47184 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47147 * 239.99478 * 2 1 3 32 32 H 1.09000 * 109.46640 * 119.99728 * 2 1 3 33 33 H 0.96996 * 119.99995 * 264.99925 * 5 3 2 34 34 H 0.97000 * 120.00680 * 0.02562 * 8 6 5 35 35 H 1.08994 * 109.47227 * 299.99866 * 9 8 6 36 36 H 1.09004 * 109.46877 * 60.00031 * 9 8 6 37 37 H 0.97000 * 120.00604 * 0.02562 * 12 10 9 38 38 H 0.96998 * 119.99982 * 179.97438 * 16 15 13 39 39 H 1.07994 * 119.98951 * 359.72542 * 22 21 3 40 40 H 1.08002 * 119.99215 * 179.97438 * 23 22 21 41 41 H 1.07997 * 120.00461 * 179.97438 * 24 23 22 42 42 H 1.08001 * 120.00337 * 0.02562 * 27 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6054 1.9816 0.8418 5 7 1.6525 2.0975 -1.2519 6 6 0.4352 2.6644 -1.3670 7 8 -0.3415 2.6319 -0.4321 8 7 0.0785 3.2665 -2.5188 9 6 -1.2449 3.8823 -2.6441 10 6 -1.3917 4.4821 -4.0188 11 8 -0.4807 4.4026 -4.8156 12 7 -2.5352 5.1068 -4.3628 13 6 -2.6689 5.6521 -5.6137 14 1 -1.8581 5.5806 -6.3234 15 6 -3.8478 6.2967 -5.9681 16 7 -4.8342 6.3841 -5.1044 17 14 -4.0302 7.0389 -7.6726 18 1 -2.7863 6.8063 -8.4496 19 1 -5.1755 6.4011 -8.3702 20 1 -4.2741 8.4988 -7.5532 21 6 3.5420 1.4443 0.1238 22 6 4.1341 1.6873 1.3494 23 6 5.5116 1.6886 1.4638 24 6 6.2980 1.4474 0.3528 25 6 5.7061 1.2043 -0.8735 26 17 6.6930 0.9007 -2.2691 27 6 4.3270 1.2026 -0.9874 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 2.2720 2.1231 -1.9978 34 1 0.6977 3.2915 -3.2651 35 1 -2.0139 3.1246 -2.4940 36 1 -1.3542 4.6647 -1.8931 37 1 -3.2637 5.1708 -3.7255 38 1 -5.6570 6.8344 -5.3517 39 1 3.5202 1.8801 2.2167 40 1 5.9736 1.8788 2.4213 41 1 7.3742 1.4489 0.4423 42 1 3.8643 1.0129 -1.9447 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000344284908.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:55 Heat of formation + Delta-G solvation = -55.696658 kcal Electronic energy + Delta-G solvation = -26052.555251 eV Core-core repulsion = 22058.106347 eV Total energy + Delta-G solvation = -3994.448904 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.57166 -39.47625 -38.24720 -36.94011 -35.94586 -34.38588 -33.68305 -32.21038 -31.40718 -31.31266 -31.10709 -27.70629 -26.11610 -24.39947 -23.23905 -22.54059 -21.26418 -20.38196 -19.57698 -18.61390 -18.06135 -17.35640 -16.50829 -15.95803 -15.78520 -15.53088 -15.40521 -14.74665 -14.58129 -14.42909 -14.20900 -14.10930 -13.88986 -13.85083 -13.39666 -13.26641 -12.76426 -12.38588 -12.17897 -11.94911 -11.92856 -11.76009 -11.63440 -11.53968 -11.47960 -11.14424 -11.04865 -10.90182 -10.40808 -10.32471 -10.00135 -9.64367 -9.37298 -9.17402 -9.01978 -8.63001 -8.62090 -8.09664 -6.51250 -3.93154 0.72078 0.81051 1.75953 2.75946 3.10398 3.20467 3.22816 3.29542 3.39108 3.75594 4.08973 4.13174 4.37198 4.41201 4.62093 4.77260 4.90209 4.90857 4.95985 5.01954 5.17607 5.18553 5.26957 5.47609 5.53793 5.74037 5.78304 5.87285 5.91655 5.93818 6.00585 6.02918 6.08452 6.12585 6.33639 6.45562 6.51717 6.76236 7.05964 7.46551 7.93098 8.21091 8.45549 8.78191 9.05212 9.40022 9.87845 10.65746 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015638 B = 0.002152 C = 0.001968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.057309 B =13008.636892 C =14227.573484 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.206 3.794 4 H 0.102 0.898 5 N -0.745 5.745 6 C 0.707 3.293 7 O -0.590 6.590 8 N -0.725 5.725 9 C 0.129 3.871 10 C 0.429 3.571 11 O -0.598 6.598 12 N -0.550 5.550 13 C -0.304 4.304 14 H 0.106 0.894 15 C 0.025 3.975 16 N -0.895 5.895 17 Si 0.932 3.068 18 H -0.267 1.267 19 H -0.280 1.280 20 H -0.280 1.280 21 C -0.075 4.075 22 C -0.103 4.103 23 C -0.104 4.104 24 C -0.112 4.112 25 C -0.031 4.031 26 Cl -0.069 7.069 27 C -0.104 4.104 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.044 0.956 31 H 0.063 0.937 32 H 0.069 0.931 33 H 0.395 0.605 34 H 0.406 0.594 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.396 0.604 38 H 0.274 0.726 39 H 0.133 0.867 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.882 -12.087 13.852 26.353 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.101 3.899 4 H 0.119 0.881 5 N -0.401 5.401 6 C 0.407 3.593 7 O -0.469 6.469 8 N -0.382 5.382 9 C 0.001 3.999 10 C 0.214 3.786 11 O -0.484 6.484 12 N -0.185 5.185 13 C -0.433 4.433 14 H 0.123 0.877 15 C -0.178 4.178 16 N -0.535 5.535 17 Si 0.759 3.241 18 H -0.191 1.191 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.076 4.076 22 C -0.121 4.121 23 C -0.122 4.122 24 C -0.131 4.131 25 C -0.057 4.057 26 Cl -0.040 7.040 27 C -0.123 4.123 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.063 0.937 31 H 0.082 0.918 32 H 0.088 0.912 33 H 0.230 0.770 34 H 0.243 0.757 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.230 0.770 38 H 0.083 0.917 39 H 0.151 0.849 40 H 0.152 0.848 41 H 0.151 0.849 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 18.614 -12.072 14.005 26.237 hybrid contribution 0.083 0.455 -1.317 1.396 sum 18.697 -11.617 12.688 25.407 Atomic orbital electron populations 1.21796 0.94090 1.00484 1.03734 1.21974 0.97568 0.94950 1.02227 1.19695 0.88387 0.93991 0.87855 0.88056 1.45187 1.16405 1.61832 1.16709 1.15763 0.81931 0.78326 0.83303 1.90913 1.51741 1.65278 1.38978 1.44792 1.18377 1.59879 1.15132 1.20778 0.84137 0.98012 0.96975 1.19778 0.84730 0.85203 0.88874 1.90494 1.40818 1.64376 1.52733 1.41798 1.13767 1.47956 1.14948 1.19773 1.01351 1.31813 0.90391 0.87654 1.25324 0.95105 0.97444 0.99895 1.69620 1.05511 1.42986 1.35369 0.85764 0.78532 0.78481 0.81347 1.19148 1.20623 1.20618 1.19966 0.95218 0.99073 0.93364 1.21148 0.94988 0.98739 0.97238 1.21123 0.93463 0.99143 0.98451 1.21094 1.00747 1.00222 0.91058 1.20911 0.91658 1.04235 0.88935 1.98391 1.70050 1.94237 1.41297 1.20858 0.91435 1.00483 0.99523 0.92005 0.91861 0.93711 0.91789 0.91189 0.77019 0.75655 0.90011 0.90020 0.77025 0.91650 0.84929 0.84811 0.84915 0.84881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.51 37.16 0.32 -1.37 16 2 C -0.13 -1.22 5.59 -26.73 -0.15 -1.36 16 3 C 0.21 2.04 2.46 -69.08 -0.17 1.88 16 4 H 0.10 1.12 7.44 -51.93 -0.39 0.74 16 5 N -0.74 -8.55 4.98 -59.81 -0.30 -8.85 16 6 C 0.71 10.76 7.13 -86.92 -0.62 10.14 16 7 O -0.59 -10.43 13.48 5.29 0.07 -10.36 16 8 N -0.72 -11.84 5.53 -66.41 -0.37 -12.21 16 9 C 0.13 2.36 6.15 -5.19 -0.03 2.33 16 10 C 0.43 9.76 7.85 -10.99 -0.09 9.67 16 11 O -0.60 -15.20 15.24 5.55 0.08 -15.12 16 12 N -0.55 -13.58 5.29 -10.96 -0.06 -13.63 16 13 C -0.30 -8.24 9.68 -14.93 -0.14 -8.38 16 14 H 0.11 2.99 7.16 -52.49 -0.38 2.61 16 15 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 16 N -0.89 -23.86 13.05 55.50 0.72 -23.13 16 17 Si 0.93 20.53 29.55 -169.99 -5.02 15.51 16 18 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 20 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 21 C -0.08 -0.64 4.95 -104.63 -0.52 -1.16 16 22 C -0.10 -0.75 9.67 -39.58 -0.38 -1.13 16 23 C -0.10 -0.67 10.05 -39.59 -0.40 -1.06 16 24 C -0.11 -0.81 9.83 -39.55 -0.39 -1.20 16 25 C -0.03 -0.26 6.32 -39.50 -0.25 -0.51 16 26 Cl -0.07 -0.59 28.96 -51.86 -1.50 -2.09 16 27 C -0.10 -0.89 8.84 -39.55 -0.35 -1.24 16 28 H 0.06 0.78 7.84 -51.93 -0.41 0.37 16 29 H 0.06 0.90 5.64 -51.93 -0.29 0.61 16 30 H 0.04 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.39 3.91 6.88 -40.82 -0.28 3.62 16 34 H 0.41 6.56 7.45 -40.82 -0.30 6.25 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 37 H 0.40 9.40 7.90 -40.82 -0.32 9.08 16 38 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 39 H 0.13 0.76 8.04 -52.49 -0.42 0.34 16 40 H 0.13 0.54 8.06 -52.49 -0.42 0.12 16 41 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.13 1.06 6.92 -52.49 -0.36 0.69 16 LS Contribution 370.34 15.07 5.58 5.58 Total: -1.00 -31.03 370.34 -9.30 -40.33 By element: Atomic # 1 Polarization: 22.06 SS G_CDS: -5.25 Total: 16.81 kcal Atomic # 6 Polarization: 10.43 SS G_CDS: -3.27 Total: 7.16 kcal Atomic # 7 Polarization: -57.83 SS G_CDS: 0.00 Total: -57.82 kcal Atomic # 8 Polarization: -25.63 SS G_CDS: 0.16 Total: -25.47 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.02 Total: 15.51 kcal Atomic # 17 Polarization: -0.59 SS G_CDS: -1.50 Total: -2.09 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -31.03 -9.30 -40.33 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344284908.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.366 kcal (2) G-P(sol) polarization free energy of solvation -31.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds