Wall clock time and date at job start Tue Mar 31 2020 22:16:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31414 * 1 3 3 Si 1.86793 * 120.00008 * 2 1 4 4 H 1.48500 * 109.47117 * 269.99983 * 3 2 1 5 5 H 1.48505 * 109.47280 * 30.00350 * 3 2 1 6 6 H 1.48499 * 109.47149 * 150.00234 * 3 2 1 7 7 C 1.38950 * 119.99675 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99437 * 180.02562 * 7 2 1 9 9 N 1.37095 * 120.00330 * 359.97438 * 7 2 1 10 10 C 1.34777 * 120.00071 * 180.02562 * 9 7 2 11 11 O 1.21297 * 119.99863 * 359.97438 * 10 9 7 12 12 C 1.50697 * 120.00100 * 180.02562 * 10 9 7 13 13 N 1.46498 * 109.47280 * 179.97438 * 12 10 9 14 14 C 1.34774 * 120.00109 * 180.02562 * 13 12 10 15 15 O 1.21583 * 119.99919 * 0.02562 * 14 13 12 16 16 N 1.34774 * 119.99868 * 180.02562 * 14 13 12 17 17 C 1.46506 * 120.00072 * 179.97438 * 16 14 13 18 18 C 1.52997 * 109.47289 * 180.02562 * 17 16 14 19 19 C 1.52996 * 109.47131 * 180.02562 * 18 17 16 20 20 C 1.50703 * 109.47130 * 179.97438 * 19 18 17 21 21 C 1.38259 * 119.99241 * 269.71902 * 20 19 18 22 22 C 1.38220 * 120.02411 * 179.76535 * 21 20 19 23 23 C 1.38238 * 120.01308 * 0.51838 * 22 21 20 24 24 C 1.38327 * 119.98718 * 359.73597 * 23 22 21 25 25 Cl 1.73602 * 120.01671 * 180.02562 * 24 23 22 26 26 C 1.38192 * 119.98980 * 90.00022 * 20 19 18 27 27 H 0.97000 * 120.00112 * 359.97438 * 1 2 3 28 28 H 0.97002 * 120.00071 * 359.97438 * 9 7 2 29 29 H 1.09003 * 109.46756 * 60.00014 * 12 10 9 30 30 H 1.08995 * 109.46982 * 300.00076 * 12 10 9 31 31 H 0.97006 * 119.99928 * 359.97438 * 13 12 10 32 32 H 0.97001 * 120.00676 * 359.97438 * 16 14 13 33 33 H 1.09001 * 109.47060 * 300.00359 * 17 16 14 34 34 H 1.09004 * 109.47073 * 59.99848 * 17 16 14 35 35 H 1.09001 * 109.46832 * 299.99854 * 18 17 16 36 36 H 1.08996 * 109.46952 * 59.99873 * 18 17 16 37 37 H 1.09001 * 109.46997 * 299.99574 * 19 18 17 38 38 H 1.09004 * 109.47298 * 59.99717 * 19 18 17 39 39 H 1.08001 * 119.98824 * 0.02562 * 21 20 19 40 40 H 1.08003 * 119.99337 * 180.25480 * 22 21 20 41 41 H 1.07999 * 120.00521 * 179.77059 * 23 22 21 42 42 H 1.08000 * 120.01123 * 359.95391 * 26 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.4956 2.0464 -1.4001 5 1 1.4456 2.6526 0.7001 6 1 3.5457 1.4401 0.7000 7 6 2.0088 -1.2034 -0.0005 8 1 3.0889 -1.2033 -0.0001 9 7 1.3233 -2.3907 -0.0005 10 6 1.9972 -3.5579 -0.0005 11 8 3.2102 -3.5579 -0.0010 12 6 1.2437 -4.8630 -0.0011 13 7 2.1957 -5.9765 -0.0016 14 6 1.7465 -7.2471 -0.0027 15 8 0.5511 -7.4693 -0.0038 16 7 2.6223 -8.2715 -0.0026 17 6 2.1340 -9.6528 -0.0033 18 6 3.3240 -10.6145 -0.0024 19 6 2.8140 -12.0569 -0.0037 20 6 3.9861 -13.0041 -0.0035 21 6 4.5208 -13.4423 -1.2008 22 6 5.5989 -14.3073 -1.2014 23 6 6.1364 -14.7432 -0.0047 24 6 5.5985 -14.3092 1.1935 25 17 6.2733 -14.8556 2.6968 26 6 4.5225 -13.4391 1.1935 27 1 -0.4850 0.8400 0.0004 28 1 0.3533 -2.3907 0.0002 29 1 0.6174 -4.9204 -0.8914 30 1 0.6168 -4.9209 0.8886 31 1 3.1494 -5.7992 -0.0019 32 1 3.5760 -8.0944 -0.0022 33 1 1.5280 -9.8243 0.8864 34 1 1.5288 -9.8238 -0.8936 35 1 3.9302 -10.4430 -0.8919 36 1 3.9287 -10.4433 0.8881 37 1 2.2075 -12.2286 0.8856 38 1 2.2094 -12.2278 -0.8944 39 1 4.0986 -13.1054 -2.1360 40 1 6.0188 -14.6460 -2.1370 41 1 6.9765 -15.4219 -0.0053 42 1 4.1023 -13.0997 2.1288 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000344512837.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:01 Heat of formation + Delta-G solvation = -88.528460 kcal Electronic energy + Delta-G solvation = -24544.676908 eV Core-core repulsion = 20548.804310 eV Total energy + Delta-G solvation = -3995.872598 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.18486 -40.39782 -39.99363 -37.57743 -36.87203 -36.19517 -35.24344 -34.46901 -33.35519 -31.69598 -31.22938 -29.15708 -26.96955 -25.98702 -23.61673 -23.19360 -22.15779 -21.66658 -21.34722 -20.09749 -19.45861 -17.97970 -17.41041 -17.35035 -17.11344 -16.67414 -16.48564 -16.37387 -15.99803 -15.89288 -15.31811 -15.23918 -15.13129 -14.68421 -14.60411 -14.09148 -13.93099 -13.74556 -13.53382 -13.43109 -13.22163 -12.89293 -12.67906 -12.44468 -12.40627 -12.23966 -12.19996 -12.11949 -11.69632 -11.65516 -11.55816 -11.41541 -10.54281 -10.40717 -10.08899 -9.84154 -9.77951 -9.60671 -8.49865 -6.00090 0.20640 0.31713 1.17138 1.37489 1.43566 1.55445 1.65947 1.91203 2.14265 2.29830 2.67104 3.07365 3.17446 3.36596 3.64310 3.88710 4.07345 4.11513 4.22259 4.25194 4.33552 4.38918 4.43834 4.45959 4.48184 4.60377 4.73615 4.82721 4.89786 5.05529 5.16435 5.28180 5.30484 5.33472 5.39988 5.42229 5.53943 5.61230 5.89402 5.92840 5.99145 6.49421 7.04691 7.05725 7.44281 7.55945 7.95885 8.66998 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.023990 B = 0.001386 C = 0.001357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1166.881191 B =20189.993846 C =20636.113534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C -0.010 4.010 3 Si 0.998 3.002 4 H -0.270 1.270 5 H -0.272 1.272 6 H -0.270 1.270 7 C -0.338 4.338 8 H 0.087 0.913 9 N -0.559 5.559 10 C 0.433 3.567 11 O -0.624 6.624 12 C 0.142 3.858 13 N -0.725 5.725 14 C 0.703 3.297 15 O -0.634 6.634 16 N -0.734 5.734 17 C 0.138 3.862 18 C -0.113 4.113 19 C -0.074 4.074 20 C -0.071 4.071 21 C -0.116 4.116 22 C -0.107 4.107 23 C -0.126 4.126 24 C -0.048 4.048 25 Cl -0.081 7.081 26 C -0.120 4.120 27 H 0.280 0.720 28 H 0.399 0.601 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.410 0.590 32 H 0.410 0.590 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.083 0.917 38 H 0.091 0.909 39 H 0.147 0.853 40 H 0.154 0.846 41 H 0.141 0.859 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.006 -30.467 -1.224 31.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.211 4.211 3 Si 0.821 3.179 4 H -0.196 1.196 5 H -0.197 1.197 6 H -0.195 1.195 7 C -0.468 4.468 8 H 0.104 0.896 9 N -0.195 5.195 10 C 0.221 3.779 11 O -0.512 6.512 12 C 0.013 3.987 13 N -0.383 5.383 14 C 0.402 3.598 15 O -0.516 6.516 16 N -0.390 5.390 17 C 0.015 3.985 18 C -0.151 4.151 19 C -0.112 4.112 20 C -0.071 4.071 21 C -0.134 4.134 22 C -0.125 4.125 23 C -0.144 4.144 24 C -0.074 4.074 25 Cl -0.053 7.053 26 C -0.139 4.139 27 H 0.089 0.911 28 H 0.233 0.767 29 H 0.109 0.891 30 H 0.109 0.891 31 H 0.248 0.752 32 H 0.246 0.754 33 H 0.077 0.923 34 H 0.081 0.919 35 H 0.099 0.901 36 H 0.093 0.907 37 H 0.101 0.899 38 H 0.110 0.890 39 H 0.165 0.835 40 H 0.171 0.829 41 H 0.159 0.841 42 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 8.625 -30.552 -1.080 31.764 hybrid contribution 0.647 1.015 0.351 1.254 sum 9.273 -29.537 -0.728 30.967 Atomic orbital electron populations 1.69682 1.06999 1.29613 1.49271 1.26122 0.96528 1.02654 0.95778 0.84860 0.77882 0.76495 0.78689 1.19559 1.19694 1.19500 1.19748 0.92989 0.83571 1.50445 0.89550 1.41832 1.09595 1.04579 1.63456 1.20431 0.88122 0.85918 0.83478 1.90467 1.15171 1.87568 1.58022 1.20571 0.91019 0.83086 1.04003 1.44702 1.10991 1.03330 1.79271 1.15985 0.85192 0.80839 0.77779 1.90880 1.15765 1.84755 1.60152 1.44997 1.09292 1.05077 1.79640 1.21294 0.97074 0.78188 1.01979 1.21672 0.96690 0.92834 1.03889 1.20510 0.94608 0.91311 1.04776 1.19929 0.97355 0.97452 0.92357 1.21501 0.96269 0.97094 0.98537 1.21439 0.95943 0.96855 0.98224 1.21305 1.01118 1.01120 0.90898 1.21118 0.98078 1.00891 0.87329 1.98376 1.84846 1.89042 1.33006 1.21127 0.95702 0.97530 0.99509 0.91086 0.76690 0.89069 0.89127 0.75218 0.75389 0.92292 0.91917 0.90102 0.90749 0.89884 0.89013 0.83493 0.82866 0.84076 0.84661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.50 13.05 21.66 0.28 -48.22 16 2 C -0.01 -0.53 5.50 84.93 0.47 -0.06 16 3 Si 1.00 41.58 29.55 68.60 2.03 43.61 16 4 H -0.27 -10.93 7.11 99.48 0.71 -10.23 16 5 H -0.27 -10.82 7.11 99.48 0.71 -10.11 16 6 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 7 C -0.34 -18.58 9.68 84.04 0.81 -17.77 16 8 H 0.09 4.98 7.16 -2.91 -0.02 4.96 16 9 N -0.56 -28.01 5.29 -306.98 -1.62 -29.63 16 10 C 0.43 19.93 7.85 87.66 0.69 20.62 16 11 O -0.62 -31.99 15.24 -3.08 -0.05 -32.04 16 12 C 0.14 5.21 6.15 85.63 0.53 5.74 16 13 N -0.73 -23.66 5.53 -482.32 -2.67 -26.33 16 14 C 0.70 21.86 8.57 179.06 1.53 23.39 16 15 O -0.63 -24.26 16.34 -3.98 -0.07 -24.32 16 16 N -0.73 -15.67 5.56 -478.53 -2.66 -18.33 16 17 C 0.14 2.34 5.67 86.38 0.49 2.83 16 18 C -0.11 -1.17 5.31 30.59 0.16 -1.01 16 19 C -0.07 -0.66 5.35 29.85 0.16 -0.50 16 20 C -0.07 -0.76 5.13 -19.87 -0.10 -0.86 16 21 C -0.12 -1.07 9.70 22.27 0.22 -0.86 16 22 C -0.11 -0.96 10.05 22.27 0.22 -0.74 16 23 C -0.13 -1.44 9.83 22.29 0.22 -1.22 16 24 C -0.05 -0.66 6.32 22.32 0.14 -0.52 16 25 Cl -0.08 -1.20 28.96 -2.72 -0.08 -1.28 16 26 C -0.12 -1.55 9.49 22.29 0.21 -1.34 16 27 H 0.28 13.86 8.31 -92.71 -0.77 13.09 16 28 H 0.40 19.22 7.90 -92.71 -0.73 18.49 16 29 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 30 H 0.09 3.20 8.14 -2.39 -0.02 3.18 16 31 H 0.41 12.92 7.45 -92.70 -0.69 12.23 16 32 H 0.41 6.69 8.49 -92.71 -0.79 5.91 16 33 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 35 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 37 H 0.08 0.71 8.09 -2.39 -0.02 0.69 16 38 H 0.09 0.65 8.08 -2.38 -0.02 0.63 16 39 H 0.15 0.80 8.06 -2.91 -0.02 0.78 16 40 H 0.15 0.64 8.06 -2.91 -0.02 0.62 16 41 H 0.14 1.22 8.06 -2.91 -0.02 1.20 16 42 H 0.14 1.59 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -69.25 382.00 -0.21 -69.46 By element: Atomic # 1 Polarization: 40.51 SS G_CDS: -1.13 Total: 39.38 kcal Atomic # 6 Polarization: 21.94 SS G_CDS: 5.75 Total: 27.70 kcal Atomic # 7 Polarization: -115.84 SS G_CDS: -6.67 Total: -122.51 kcal Atomic # 8 Polarization: -56.25 SS G_CDS: -0.11 Total: -56.36 kcal Atomic # 14 Polarization: 41.58 SS G_CDS: 2.03 Total: 43.61 kcal Atomic # 17 Polarization: -1.20 SS G_CDS: -0.08 Total: -1.28 kcal Total: -69.25 -0.21 -69.46 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000344512837.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.069 kcal (2) G-P(sol) polarization free energy of solvation -69.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds