Wall clock time and date at job start Tue Mar 31 2020 22:16:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00278 * 2 1 4 4 H 1.48503 * 109.46698 * 240.00247 * 3 2 1 5 5 H 1.48494 * 109.46757 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47185 * 120.00058 * 3 2 1 7 7 C 1.37884 * 119.99842 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00217 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99816 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47115 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47220 * 180.02562 * 10 9 7 12 12 C 1.34776 * 119.99794 * 180.02562 * 11 10 9 13 13 O 1.21585 * 120.00447 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99703 * 179.97438 * 12 11 10 15 15 C 1.46504 * 119.99810 * 184.82251 * 14 12 11 16 16 H 1.08997 * 109.47312 * 31.68429 * 15 14 12 17 17 C 1.53000 * 109.46983 * 151.68193 * 15 14 12 18 18 C 1.50706 * 109.47100 * 294.38511 * 17 15 14 19 19 N 1.34771 * 120.00094 * 174.43445 * 18 17 15 20 20 O 1.21283 * 119.99642 * 354.44091 * 18 17 15 21 21 C 1.50705 * 109.47201 * 271.67582 * 15 14 12 22 22 C 1.38263 * 119.99144 * 140.00022 * 21 15 14 23 23 C 1.38214 * 120.02725 * 180.02562 * 22 21 15 24 24 C 1.38240 * 120.01262 * 359.97438 * 23 22 21 25 25 C 1.38329 * 119.98454 * 359.97438 * 24 23 22 26 26 Cl 1.73605 * 120.01079 * 180.02562 * 25 24 23 27 27 C 1.38191 * 119.99150 * 319.98459 * 21 15 14 28 28 H 0.97001 * 119.99546 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47174 * 60.00102 * 9 7 2 30 30 H 1.08999 * 109.47450 * 300.00098 * 9 7 2 31 31 H 1.09002 * 109.46741 * 60.00174 * 10 9 7 32 32 H 1.08999 * 109.47317 * 300.00517 * 10 9 7 33 33 H 0.96993 * 120.00053 * 0.02562 * 11 10 9 34 34 H 0.96996 * 120.00306 * 4.82627 * 14 12 11 35 35 H 1.08994 * 109.47457 * 54.39048 * 17 15 14 36 36 H 1.09007 * 109.47100 * 174.38953 * 17 15 14 37 37 H 0.97005 * 120.00087 * 0.02562 * 19 18 17 38 38 H 0.96996 * 120.00153 * 180.02562 * 19 18 17 39 39 H 1.08003 * 119.98408 * 359.72440 * 22 21 15 40 40 H 1.08007 * 119.99654 * 179.97438 * 23 22 21 41 41 H 1.08004 * 120.00686 * 179.97438 * 24 23 22 42 42 H 1.07994 * 120.00849 * 0.02562 * 27 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6962 -1.2126 5 1 1.2843 2.7463 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0018 11 7 1.5126 -4.9308 -0.0024 12 6 2.1865 -6.0980 -0.0031 13 8 3.4023 -6.0981 -0.0027 14 7 1.5125 -7.2652 -0.0031 15 6 2.2412 -8.5318 0.1029 16 1 3.1388 -8.3854 0.7036 17 6 1.3474 -9.5801 0.7686 18 6 1.0717 -9.1735 2.1933 19 7 0.2119 -9.8899 2.9442 20 8 1.6234 -8.2013 2.6640 21 6 2.6297 -9.0046 -1.2743 22 6 3.8718 -9.5745 -1.4846 23 6 4.2291 -10.0079 -2.7474 24 6 3.3445 -9.8722 -3.8010 25 6 2.1014 -9.3030 -3.5911 26 17 0.9897 -9.1329 -4.9136 27 6 1.7444 -8.8686 -2.3267 28 1 -0.4849 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8896 31 1 2.8724 -3.6048 0.8877 32 1 2.8712 -3.6040 -0.8922 33 1 0.5427 -4.9308 -0.0024 34 1 0.5451 -7.2667 -0.0734 35 1 0.4066 -9.6546 0.2233 36 1 1.8512 -10.5467 0.7577 37 1 -0.2291 -10.6676 2.5677 38 1 0.0341 -9.6280 3.8610 39 1 4.5649 -9.6767 -0.6626 40 1 5.1996 -10.4527 -2.9111 41 1 3.6240 -10.2105 -4.7879 42 1 0.7744 -8.4233 -2.1624 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000345817582.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:19 Heat of formation + Delta-G solvation = -63.542220 kcal Electronic energy + Delta-G solvation = -26435.681274 eV Core-core repulsion = 22440.892161 eV Total energy + Delta-G solvation = -3994.789113 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.56354 -39.31672 -38.98310 -36.73759 -35.56872 -34.49666 -33.92652 -32.81080 -31.64967 -30.96302 -30.02830 -29.10907 -25.21134 -24.29592 -22.92445 -21.75469 -21.01993 -20.52765 -20.32449 -18.23981 -17.59286 -17.45638 -16.78945 -16.42158 -16.09676 -15.71965 -15.29185 -15.00166 -14.88228 -14.45132 -14.27313 -13.96688 -13.87370 -13.65198 -13.46617 -13.37702 -12.84816 -12.57866 -12.20408 -12.08077 -11.80447 -11.64290 -11.40504 -11.11594 -11.06886 -10.95153 -10.59072 -10.24407 -10.20179 -9.95665 -9.82018 -9.47735 -9.22615 -9.17025 -8.96956 -8.87298 -8.41329 -8.14454 -6.02914 -4.05054 0.93153 1.02868 1.93047 2.40764 3.05104 3.15534 3.36215 3.39288 3.42660 3.44504 3.75045 4.38141 4.39902 4.45329 4.58307 4.72029 4.75142 4.83502 4.91690 5.12061 5.15557 5.17556 5.34075 5.37605 5.58420 5.72012 5.98823 6.09230 6.23863 6.40682 6.49182 6.50745 6.54364 6.66866 6.87944 7.00938 7.13253 7.30743 7.64910 7.72210 7.96890 8.02038 8.33913 8.54710 9.00062 9.13965 9.59137 11.08828 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009376 B = 0.002863 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2985.665662 B = 9778.041643 C =11569.990585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.058 3.942 3 Si 0.897 3.103 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.519 4.519 8 H 0.059 0.941 9 C 0.014 3.986 10 C 0.142 3.858 11 N -0.738 5.738 12 C 0.708 3.292 13 O -0.593 6.593 14 N -0.740 5.740 15 C 0.222 3.778 16 H 0.111 0.889 17 C -0.148 4.148 18 C 0.511 3.489 19 N -0.860 5.860 20 O -0.518 6.518 21 C -0.080 4.080 22 C -0.097 4.097 23 C -0.107 4.107 24 C -0.113 4.113 25 C -0.035 4.035 26 Cl -0.074 7.074 27 C -0.093 4.093 28 H 0.262 0.738 29 H 0.021 0.979 30 H 0.022 0.978 31 H 0.053 0.947 32 H 0.052 0.948 33 H 0.391 0.609 34 H 0.390 0.610 35 H 0.100 0.900 36 H 0.112 0.888 37 H 0.399 0.601 38 H 0.402 0.598 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.131 0.869 42 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.079 -29.677 -2.656 29.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.143 4.143 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.201 1.201 7 C -0.558 4.558 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.019 3.981 11 N -0.391 5.391 12 C 0.408 3.592 13 O -0.471 6.471 14 N -0.395 5.395 15 C 0.115 3.885 16 H 0.129 0.871 17 C -0.189 4.189 18 C 0.294 3.706 19 N -0.425 5.425 20 O -0.392 6.392 21 C -0.082 4.082 22 C -0.116 4.116 23 C -0.125 4.125 24 C -0.132 4.132 25 C -0.062 4.062 26 Cl -0.045 7.045 27 C -0.112 4.112 28 H 0.071 0.929 29 H 0.039 0.961 30 H 0.040 0.960 31 H 0.072 0.928 32 H 0.071 0.929 33 H 0.224 0.776 34 H 0.224 0.776 35 H 0.118 0.882 36 H 0.130 0.870 37 H 0.227 0.773 38 H 0.232 0.768 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.149 0.851 42 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.276 -28.798 -2.613 28.918 hybrid contribution -1.031 0.654 -0.044 1.222 sum -0.755 -28.144 -2.658 28.279 Atomic orbital electron populations 1.69954 1.06079 1.26865 1.50556 1.24993 0.94886 0.99352 0.95070 0.86572 0.79511 0.82676 0.78782 1.20120 1.21298 1.20107 1.21032 0.93243 0.90411 1.51139 0.92286 1.19312 0.94262 0.91088 0.97717 1.21557 0.95583 0.80438 1.00538 1.45469 1.09697 1.05312 1.78608 1.15910 0.85583 0.80293 0.77423 1.90872 1.11728 1.86466 1.58013 1.44963 1.09157 1.04272 1.81155 1.19240 0.96284 0.81742 0.91216 0.87111 1.22031 1.02595 1.01049 0.93246 1.20549 0.78856 0.82927 0.88225 1.43898 1.48119 1.33130 1.17340 1.90886 1.48911 1.26109 1.73310 1.20240 0.94210 0.97979 0.95735 1.21139 0.95554 0.97286 0.97628 1.21089 0.99361 0.99836 0.92238 1.21055 0.92231 0.99768 1.00097 1.20903 0.92471 1.03490 0.89306 1.98377 1.62268 1.96519 1.47308 1.20801 1.00540 0.99232 0.90584 0.92878 0.96052 0.96008 0.92836 0.92921 0.77606 0.77640 0.88181 0.86996 0.77277 0.76762 0.85150 0.85012 0.85122 0.85199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.79 13.29 55.43 0.74 -26.05 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.90 21.96 29.54 -169.99 -5.02 16.94 16 4 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 7 C -0.52 -14.92 9.11 -34.44 -0.31 -15.24 16 8 H 0.06 1.66 7.74 -52.49 -0.41 1.26 16 9 C 0.01 0.36 5.09 -27.88 -0.14 0.21 16 10 C 0.14 3.24 5.61 -4.04 -0.02 3.22 16 11 N -0.74 -14.05 5.56 -65.23 -0.36 -14.41 16 12 C 0.71 13.17 8.54 -86.92 -0.74 12.43 16 13 O -0.59 -13.37 16.00 5.29 0.08 -13.29 16 14 N -0.74 -9.71 3.61 -59.81 -0.22 -9.93 16 15 C 0.22 2.44 1.74 -69.08 -0.12 2.32 16 16 H 0.11 1.55 7.11 -51.93 -0.37 1.18 16 17 C -0.15 -0.98 5.24 -27.88 -0.15 -1.13 16 18 C 0.51 4.67 7.93 -10.98 -0.09 4.59 16 19 N -0.86 -4.43 8.87 31.22 0.28 -4.15 16 20 O -0.52 -7.82 16.30 5.55 0.09 -7.73 16 21 C -0.08 -0.84 4.94 -104.63 -0.52 -1.35 16 22 C -0.10 -0.95 9.67 -39.58 -0.38 -1.33 16 23 C -0.11 -0.93 10.05 -39.59 -0.40 -1.33 16 24 C -0.11 -1.05 9.83 -39.55 -0.39 -1.43 16 25 C -0.04 -0.37 6.32 -39.50 -0.25 -0.62 16 26 Cl -0.07 -0.75 28.96 -51.86 -1.50 -2.25 16 27 C -0.09 -0.97 9.11 -39.55 -0.36 -1.33 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 31 H 0.05 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.05 1.25 8.14 -51.93 -0.42 0.83 16 33 H 0.39 6.47 8.49 -40.82 -0.35 6.12 16 34 H 0.39 4.04 8.65 -40.82 -0.35 3.69 16 35 H 0.10 0.43 8.14 -51.93 -0.42 0.00 16 36 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.40 0.69 8.83 -40.82 -0.36 0.33 16 38 H 0.40 2.07 8.93 -40.82 -0.36 1.70 16 39 H 0.13 1.10 8.04 -52.48 -0.42 0.68 16 40 H 0.13 0.82 8.06 -52.48 -0.42 0.40 16 41 H 0.13 0.98 8.06 -52.48 -0.42 0.56 16 42 H 0.13 1.24 7.72 -52.49 -0.41 0.83 16 LS Contribution 380.87 15.07 5.74 5.74 Total: -1.00 -37.98 380.87 -9.69 -47.67 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -5.54 Total: 6.85 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: -3.97 Total: 0.61 kcal Atomic # 7 Polarization: -54.97 SS G_CDS: 0.43 Total: -54.54 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: 0.18 Total: -21.01 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 17 Polarization: -0.75 SS G_CDS: -1.50 Total: -2.25 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -37.98 -9.69 -47.67 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345817582.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.875 kcal (2) G-P(sol) polarization free energy of solvation -37.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds