Wall clock time and date at job start Tue Mar 31 2020 22:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86799 * 120.00278 * 2 1 4 4 H 1.48503 * 109.46698 * 240.00247 * 3 2 1 5 5 H 1.48494 * 109.46757 * 359.97438 * 3 2 1 6 6 H 1.48493 * 109.47185 * 120.00058 * 3 2 1 7 7 C 1.37884 * 119.99842 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00217 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99816 * 359.97438 * 7 2 1 10 10 C 1.52998 * 109.47115 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47220 * 180.02562 * 10 9 7 12 12 C 1.34776 * 119.99794 * 180.02562 * 11 10 9 13 13 O 1.21585 * 120.00447 * 0.02562 * 12 11 10 14 14 N 1.34776 * 119.99703 * 179.97438 * 12 11 10 15 15 C 1.46504 * 119.99810 * 184.82251 * 14 12 11 16 16 H 1.08997 * 109.47312 * 31.68429 * 15 14 12 17 17 C 1.53000 * 109.46983 * 151.68193 * 15 14 12 18 18 C 1.50706 * 109.47100 * 294.38511 * 17 15 14 19 19 N 1.34771 * 120.00094 * 174.43445 * 18 17 15 20 20 O 1.21283 * 119.99642 * 354.44091 * 18 17 15 21 21 C 1.50705 * 109.47201 * 271.67582 * 15 14 12 22 22 C 1.38263 * 119.99144 * 140.00022 * 21 15 14 23 23 C 1.38214 * 120.02725 * 180.02562 * 22 21 15 24 24 C 1.38240 * 120.01262 * 359.97438 * 23 22 21 25 25 C 1.38329 * 119.98454 * 359.97438 * 24 23 22 26 26 Cl 1.73605 * 120.01079 * 180.02562 * 25 24 23 27 27 C 1.38191 * 119.99150 * 319.98459 * 21 15 14 28 28 H 0.97001 * 119.99546 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47174 * 60.00102 * 9 7 2 30 30 H 1.08999 * 109.47450 * 300.00098 * 9 7 2 31 31 H 1.09002 * 109.46741 * 60.00174 * 10 9 7 32 32 H 1.08999 * 109.47317 * 300.00517 * 10 9 7 33 33 H 0.96993 * 120.00053 * 0.02562 * 11 10 9 34 34 H 0.96996 * 120.00306 * 4.82627 * 14 12 11 35 35 H 1.08994 * 109.47457 * 54.39048 * 17 15 14 36 36 H 1.09007 * 109.47100 * 174.38953 * 17 15 14 37 37 H 0.97005 * 120.00087 * 0.02562 * 19 18 17 38 38 H 0.96996 * 120.00153 * 180.02562 * 19 18 17 39 39 H 1.08003 * 119.98408 * 359.72440 * 22 21 15 40 40 H 1.08007 * 119.99654 * 179.97438 * 23 22 21 41 41 H 1.08004 * 120.00686 * 179.97438 * 24 23 22 42 42 H 1.07994 * 120.00849 * 0.02562 * 27 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6177 0.0000 4 1 3.1029 1.6962 -1.2126 5 1 1.2843 2.7463 -0.0006 6 1 3.1030 1.6963 1.2124 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1942 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2451 -3.6622 -0.0018 11 7 1.5126 -4.9308 -0.0024 12 6 2.1865 -6.0980 -0.0031 13 8 3.4023 -6.0981 -0.0027 14 7 1.5125 -7.2652 -0.0031 15 6 2.2412 -8.5318 0.1029 16 1 3.1388 -8.3854 0.7036 17 6 1.3474 -9.5801 0.7686 18 6 1.0717 -9.1735 2.1933 19 7 0.2119 -9.8899 2.9442 20 8 1.6234 -8.2013 2.6640 21 6 2.6297 -9.0046 -1.2743 22 6 3.8718 -9.5745 -1.4846 23 6 4.2291 -10.0079 -2.7474 24 6 3.3445 -9.8722 -3.8010 25 6 2.1014 -9.3030 -3.5911 26 17 0.9897 -9.1329 -4.9136 27 6 1.7444 -8.8686 -2.3267 28 1 -0.4849 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6246 -2.5571 0.8896 31 1 2.8724 -3.6048 0.8877 32 1 2.8712 -3.6040 -0.8922 33 1 0.5427 -4.9308 -0.0024 34 1 0.5451 -7.2667 -0.0734 35 1 0.4066 -9.6546 0.2233 36 1 1.8512 -10.5467 0.7577 37 1 -0.2291 -10.6676 2.5677 38 1 0.0341 -9.6280 3.8610 39 1 4.5649 -9.6767 -0.6626 40 1 5.1996 -10.4527 -2.9111 41 1 3.6240 -10.2105 -4.7879 42 1 0.7744 -8.4233 -2.1624 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345817582.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:16:18 Heat of formation + Delta-G solvation = -92.544131 kcal Electronic energy + Delta-G solvation = -26436.938892 eV Core-core repulsion = 22440.892161 eV Total energy + Delta-G solvation = -3996.046730 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.55272 -40.27280 -40.02824 -37.55616 -36.81716 -36.09545 -34.81356 -34.60276 -32.87304 -31.69469 -31.15947 -30.50615 -26.82732 -25.53745 -23.73290 -23.06390 -22.42993 -21.81002 -21.22577 -19.53458 -18.47158 -18.43336 -18.09411 -17.57034 -17.18327 -16.61662 -16.51721 -16.34382 -16.10634 -15.98930 -15.32963 -15.08388 -15.07338 -14.67108 -14.60534 -14.41261 -14.26104 -13.98208 -13.32054 -13.20092 -12.93670 -12.80341 -12.57946 -12.52754 -12.38898 -12.23697 -12.15634 -11.82597 -11.66106 -11.50658 -11.17859 -11.02958 -10.59913 -10.58418 -10.34319 -9.90591 -9.71546 -9.62576 -8.23811 -6.34319 0.17620 0.29578 1.16608 1.41128 1.44346 1.52037 1.71751 1.79404 2.26015 2.41529 2.54529 2.73350 3.10610 3.39524 3.64744 3.71137 3.90527 4.09734 4.22086 4.24743 4.44378 4.45062 4.49984 4.52161 4.63235 4.67209 4.84097 4.86208 4.96039 5.24848 5.31576 5.36175 5.43634 5.53146 5.59038 5.63717 5.78949 5.84223 5.95983 6.05600 6.17501 6.54531 6.78139 7.15916 7.34765 7.44829 7.66932 8.88094 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009376 B = 0.002863 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2985.665662 B = 9778.041643 C =11569.990585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.007 3.993 3 Si 0.966 3.034 4 H -0.268 1.268 5 H -0.279 1.279 6 H -0.269 1.269 7 C -0.549 4.549 8 H 0.058 0.942 9 C 0.026 3.974 10 C 0.163 3.837 11 N -0.735 5.735 12 C 0.705 3.295 13 O -0.635 6.635 14 N -0.720 5.720 15 C 0.221 3.779 16 H 0.077 0.923 17 C -0.136 4.136 18 C 0.508 3.492 19 N -0.838 5.838 20 O -0.587 6.587 21 C -0.088 4.088 22 C -0.108 4.108 23 C -0.104 4.104 24 C -0.116 4.116 25 C -0.049 4.049 26 Cl -0.076 7.076 27 C -0.101 4.101 28 H 0.266 0.734 29 H 0.009 0.991 30 H 0.006 0.994 31 H 0.037 0.963 32 H 0.042 0.958 33 H 0.404 0.596 34 H 0.406 0.594 35 H 0.133 0.867 36 H 0.145 0.855 37 H 0.419 0.581 38 H 0.404 0.596 39 H 0.138 0.862 40 H 0.158 0.842 41 H 0.148 0.852 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.332 -31.255 -3.239 31.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.191 4.191 3 Si 0.790 3.210 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.194 1.194 7 C -0.587 4.587 8 H 0.076 0.924 9 C -0.011 4.011 10 C 0.039 3.961 11 N -0.390 5.390 12 C 0.405 3.595 13 O -0.517 6.517 14 N -0.375 5.375 15 C 0.115 3.885 16 H 0.096 0.904 17 C -0.176 4.176 18 C 0.293 3.707 19 N -0.403 5.403 20 O -0.467 6.467 21 C -0.089 4.089 22 C -0.127 4.127 23 C -0.122 4.122 24 C -0.135 4.135 25 C -0.075 4.075 26 Cl -0.047 7.047 27 C -0.120 4.120 28 H 0.075 0.925 29 H 0.028 0.972 30 H 0.024 0.976 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.239 0.761 34 H 0.242 0.758 35 H 0.151 0.849 36 H 0.163 0.837 37 H 0.251 0.749 38 H 0.235 0.765 39 H 0.156 0.844 40 H 0.176 0.824 41 H 0.165 0.835 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -0.064 -30.488 -3.200 30.656 hybrid contribution -0.985 1.018 0.146 1.424 sum -1.049 -29.470 -3.054 29.646 Atomic orbital electron populations 1.70059 1.07541 1.28067 1.50923 1.25883 0.95830 1.03098 0.94319 0.85484 0.78318 0.78020 0.79148 1.19262 1.20384 1.19392 1.21438 0.93574 0.91945 1.51732 0.92393 1.19101 0.94158 0.91655 0.96193 1.21016 0.94594 0.81319 0.99203 1.45180 1.10182 1.04555 1.79068 1.16071 0.85156 0.81200 0.77070 1.90835 1.13732 1.87196 1.59893 1.44800 1.09941 1.03445 1.79299 1.19332 0.95943 0.81564 0.91681 0.90447 1.22035 1.03593 1.00599 0.91405 1.20970 0.78398 0.82127 0.89193 1.43737 1.46502 1.32891 1.17121 1.90873 1.51757 1.29282 1.74763 1.20164 0.94793 0.98739 0.95246 1.21373 0.95430 0.97315 0.98544 1.21395 1.00275 0.99068 0.91498 1.21339 0.91827 0.99184 1.01112 1.21067 0.93026 1.04115 0.89294 1.98373 1.62429 1.96574 1.47352 1.20874 1.00908 0.99533 0.90657 0.92511 0.97240 0.97591 0.94459 0.93953 0.76107 0.75787 0.84857 0.83733 0.74905 0.76537 0.84399 0.82434 0.83464 0.84635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.74 13.29 21.45 0.28 -55.46 16 2 C 0.01 0.43 5.46 84.66 0.46 0.89 16 3 Si 0.97 44.94 29.54 68.60 2.03 46.97 16 4 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 5 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.45 16 7 C -0.55 -32.02 9.11 25.60 0.23 -31.78 16 8 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 9 C 0.03 1.41 5.09 29.85 0.15 1.57 16 10 C 0.16 7.71 5.61 86.38 0.48 8.20 16 11 N -0.74 -28.62 5.56 -478.55 -2.66 -31.28 16 12 C 0.71 26.77 8.54 179.05 1.53 28.30 16 13 O -0.64 -29.58 16.00 -3.98 -0.06 -29.65 16 14 N -0.72 -18.68 3.61 -461.40 -1.66 -20.35 16 15 C 0.22 4.71 1.74 44.25 0.08 4.79 16 16 H 0.08 2.24 7.11 -2.39 -0.02 2.22 16 17 C -0.14 -1.49 5.24 29.85 0.16 -1.33 16 18 C 0.51 8.64 7.93 87.66 0.69 9.33 16 19 N -0.84 -6.83 8.87 -173.53 -1.54 -8.37 16 20 O -0.59 -18.01 16.30 -3.04 -0.05 -18.06 16 21 C -0.09 -1.74 4.94 -19.87 -0.10 -1.84 16 22 C -0.11 -1.96 9.67 22.27 0.22 -1.75 16 23 C -0.10 -1.61 10.05 22.26 0.22 -1.38 16 24 C -0.12 -1.93 9.83 22.29 0.22 -1.71 16 25 C -0.05 -0.94 6.32 22.32 0.14 -0.80 16 26 Cl -0.08 -1.46 28.96 -2.72 -0.08 -1.54 16 27 C -0.10 -1.96 9.11 22.29 0.20 -1.76 16 28 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 29 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 30 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 31 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.04 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.40 13.50 8.49 -92.71 -0.79 12.71 16 34 H 0.41 7.94 8.65 -92.71 -0.80 7.14 16 35 H 0.13 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.14 0.71 8.14 -2.38 -0.02 0.69 16 37 H 0.42 0.08 8.83 -92.70 -0.82 -0.74 16 38 H 0.40 3.52 8.93 -92.71 -0.83 2.69 16 39 H 0.14 2.21 8.04 -2.91 -0.02 2.19 16 40 H 0.16 1.53 8.06 -2.91 -0.02 1.51 16 41 H 0.15 1.89 8.06 -2.91 -0.02 1.86 16 42 H 0.14 2.36 7.72 -2.91 -0.02 2.34 16 Total: -1.00 -84.92 380.87 -1.19 -86.11 By element: Atomic # 1 Polarization: 23.02 SS G_CDS: -2.13 Total: 20.89 kcal Atomic # 6 Polarization: 6.04 SS G_CDS: 4.69 Total: 10.73 kcal Atomic # 7 Polarization: -109.87 SS G_CDS: -5.58 Total: -115.45 kcal Atomic # 8 Polarization: -47.59 SS G_CDS: -0.11 Total: -47.70 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.08 Total: -1.54 kcal Total: -84.92 -1.19 -86.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345817582.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.432 kcal (2) G-P(sol) polarization free energy of solvation -84.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.112 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds