Wall clock time and date at job start Tue Mar 31 2020 22:13:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86798 * 120.00305 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00212 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99797 * 3 2 1 7 7 C 1.38805 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99906 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99580 * 359.71792 * 7 2 1 10 10 C 1.81002 * 99.99786 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47279 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99904 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99698 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99917 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47543 * 180.02562 * 14 13 11 16 16 H 1.09006 * 110.45170 * 303.84780 * 15 14 13 17 17 C 1.54506 * 110.50973 * 66.45212 * 15 14 13 18 18 C 1.54479 * 104.06084 * 118.64840 * 17 15 14 19 19 O 1.44425 * 104.80529 * 23.97862 * 18 17 15 20 20 C 1.44433 * 105.27142 * 319.48634 * 19 18 17 21 21 H 1.09000 * 110.37124 * 281.67936 * 20 19 18 22 22 C 1.50703 * 110.37210 * 159.34471 * 20 19 18 23 23 C 1.38252 * 119.96965 * 329.34616 * 22 20 19 24 24 C 1.38202 * 120.01654 * 179.76926 * 23 22 20 25 25 C 1.38453 * 119.97826 * 0.50118 * 24 23 22 26 26 F 1.35105 * 120.02495 * 179.76875 * 25 24 23 27 27 C 1.38454 * 119.94973 * 359.75266 * 25 24 23 28 28 C 1.38205 * 119.97397 * 359.97438 * 27 25 24 29 29 H 0.97000 * 119.99668 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47407 * 300.00715 * 10 9 7 31 31 H 1.09004 * 109.47205 * 60.00275 * 10 9 7 32 32 H 0.97002 * 120.00537 * 0.02562 * 13 11 10 33 33 H 1.09010 * 109.47056 * 300.00359 * 14 13 11 34 34 H 1.08995 * 109.46980 * 59.99570 * 14 13 11 35 35 H 1.09004 * 110.51070 * 237.28865 * 17 15 14 36 36 H 1.09000 * 110.51598 * 0.02562 * 17 15 14 37 37 H 1.08998 * 110.37425 * 142.80781 * 18 17 15 38 38 H 1.09001 * 110.37154 * 265.14412 * 18 17 15 39 39 H 1.07997 * 119.98853 * 0.02562 * 23 22 20 40 40 H 1.08001 * 120.00782 * 180.25277 * 24 23 22 41 41 H 1.08007 * 120.01769 * 179.97438 * 27 25 24 42 42 H 1.07997 * 119.98631 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2126 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 0.0063 10 6 2.5158 -3.8915 0.0035 11 6 1.9873 -5.3028 0.0081 12 8 0.7910 -5.5023 0.0132 13 7 2.8441 -6.3431 0.0065 14 6 2.3304 -7.7151 0.0115 15 6 3.5024 -8.6986 0.0090 16 1 4.1565 -8.5096 -0.8422 17 6 4.2939 -8.6009 1.3323 18 6 4.1632 -10.0095 1.9528 19 8 3.9029 -10.8834 0.8328 20 6 2.9870 -10.1547 -0.0135 21 1 1.9756 -10.2056 0.3897 22 6 3.0215 -10.7018 -1.4173 23 6 4.1877 -11.2524 -1.9155 24 6 4.2191 -11.7587 -3.2010 25 6 3.0851 -11.7050 -3.9936 26 9 3.1161 -12.1955 -5.2521 27 6 1.9193 -11.1486 -3.4954 28 6 1.8886 -10.6480 -2.2075 29 1 -0.4850 0.8401 0.0004 30 1 3.1211 -3.7334 -0.8891 31 1 3.1278 -3.7295 0.8908 32 1 3.8009 -6.1835 0.0027 33 1 1.7255 -7.8734 0.9045 34 1 1.7179 -7.8770 -0.8754 35 1 5.3399 -8.3659 1.1352 36 1 3.8501 -7.8522 1.9885 37 1 5.0917 -10.2937 2.4479 38 1 3.3322 -10.0381 2.6576 39 1 5.0732 -11.2906 -1.2984 40 1 5.1290 -12.1925 -3.5886 41 1 1.0342 -11.1058 -4.1128 42 1 0.9794 -10.2135 -1.8189 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347721411.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:55 Heat of formation + Delta-G solvation = -109.251153 kcal Electronic energy + Delta-G solvation = -25749.839575 eV Core-core repulsion = 21735.192118 eV Total energy + Delta-G solvation = -4014.647456 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.20069 -40.71134 -39.17099 -38.61348 -35.22485 -32.54427 -32.44549 -31.96201 -31.48658 -29.65823 -28.28977 -25.64748 -25.18832 -23.87525 -23.07670 -21.86080 -20.79169 -20.32103 -18.10260 -17.92652 -17.21420 -16.91034 -16.51212 -16.07029 -15.89404 -15.59307 -15.52340 -15.11569 -14.97793 -14.82281 -14.25535 -14.05382 -13.92001 -13.74615 -13.48025 -13.39999 -13.15113 -12.88002 -12.60294 -12.31890 -12.01966 -11.85408 -11.60561 -11.40198 -11.25461 -11.07386 -11.05537 -11.04165 -10.78749 -10.26689 -9.84978 -9.47423 -9.47137 -9.08719 -8.96632 -8.92052 -8.27057 -6.52727 -6.23688 -3.94611 0.71204 0.87512 2.96119 3.04394 3.11116 3.21872 3.25687 3.28594 3.47992 3.64876 3.90934 4.05360 4.18442 4.31242 4.36743 4.40199 4.52805 4.63100 4.75710 4.78956 4.92269 4.94490 5.06185 5.11390 5.13183 5.29411 5.34183 5.43796 5.50557 5.53334 5.58005 5.61594 5.71488 5.76940 5.82263 5.85299 5.87648 6.05337 6.10194 6.41181 6.50386 6.52589 7.57056 7.63240 8.32833 8.55071 9.21503 10.83672 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.002110 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.360603 B =13265.210736 C =14281.372413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.919 3.081 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.072 0.928 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.532 3.468 12 O -0.517 6.517 13 N -0.738 5.738 14 C 0.130 3.870 15 C -0.125 4.125 16 H 0.094 0.906 17 C -0.155 4.155 18 C 0.045 3.955 19 O -0.365 6.365 20 C 0.126 3.874 21 H 0.086 0.914 22 C -0.095 4.095 23 C -0.065 4.065 24 C -0.157 4.157 25 C 0.099 3.901 26 F -0.141 7.141 27 C -0.152 4.152 28 C -0.078 4.078 29 H 0.269 0.731 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.398 0.602 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.138 0.862 42 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.910 -24.969 -0.991 27.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.199 1.199 7 C -0.685 4.685 8 H 0.090 0.910 9 S 0.167 5.833 10 C -0.304 4.304 11 C 0.318 3.682 12 O -0.391 6.391 13 N -0.393 5.393 14 C 0.006 3.994 15 C -0.144 4.144 16 H 0.112 0.888 17 C -0.193 4.193 18 C -0.032 4.032 19 O -0.283 6.283 20 C 0.068 3.932 21 H 0.104 0.896 22 C -0.095 4.095 23 C -0.083 4.083 24 C -0.176 4.176 25 C 0.080 3.920 26 F -0.119 7.119 27 C -0.171 4.171 28 C -0.096 4.096 29 H 0.079 0.921 30 H 0.108 0.892 31 H 0.108 0.892 32 H 0.232 0.768 33 H 0.087 0.913 34 H 0.088 0.912 35 H 0.098 0.902 36 H 0.105 0.895 37 H 0.113 0.887 38 H 0.082 0.918 39 H 0.156 0.844 40 H 0.153 0.847 41 H 0.156 0.844 42 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 8.809 -25.430 -1.067 26.934 hybrid contribution 2.403 1.478 -0.243 2.832 sum 11.212 -23.952 -1.310 26.479 Atomic orbital electron populations 1.70007 1.05951 1.27595 1.46720 1.24996 0.95036 0.99035 0.94510 0.86223 0.79241 0.81227 0.78802 1.19929 1.20795 1.19939 1.22822 0.94862 0.91649 1.59135 0.90979 1.85398 1.04877 0.96322 1.96726 1.23531 1.06611 0.95350 1.04922 1.20319 0.86506 0.86276 0.75096 1.90706 1.15349 1.85603 1.47406 1.45969 1.09977 1.05249 1.78098 1.21246 0.94835 0.80668 1.02637 1.22833 0.97689 0.94363 0.99518 0.88802 1.23092 1.01488 0.98430 0.96267 1.23438 1.01733 0.88621 0.89387 1.89154 1.64834 1.39956 1.34405 1.21683 0.94525 0.88995 0.87980 0.89587 1.19642 0.94197 1.00835 0.94866 1.20864 0.98244 0.95281 0.93951 1.21175 0.97953 1.03466 0.94963 1.17789 0.95392 0.98715 0.80132 1.91509 1.97125 1.85558 1.37727 1.21134 0.97674 1.01218 0.97046 1.20865 0.98158 0.97574 0.92971 0.92104 0.89225 0.89229 0.76788 0.91264 0.91244 0.90153 0.89503 0.88736 0.91804 0.84431 0.84661 0.84388 0.84540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.97 13.22 55.49 0.73 -25.23 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.20 29.55 -169.99 -5.02 16.17 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -15.11 9.50 30.94 0.29 -14.81 16 8 H 0.07 1.91 7.80 -52.49 -0.41 1.50 16 9 S -0.06 -1.60 20.57 -107.50 -2.21 -3.81 16 10 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 11 C 0.53 9.46 7.85 -10.99 -0.09 9.37 16 12 O -0.52 -11.31 15.86 5.56 0.09 -11.22 16 13 N -0.74 -8.97 5.33 -60.29 -0.32 -9.29 16 14 C 0.13 1.34 4.79 -4.04 -0.02 1.32 16 15 C -0.12 -0.94 2.72 -89.06 -0.24 -1.18 16 16 H 0.09 0.71 7.87 -51.93 -0.41 0.31 16 17 C -0.16 -1.00 6.43 -25.17 -0.16 -1.16 16 18 C 0.04 0.29 7.63 37.93 0.29 0.58 16 19 O -0.36 -3.11 10.40 -35.23 -0.37 -3.47 16 20 C 0.13 0.99 3.05 -27.11 -0.08 0.91 16 21 H 0.09 0.64 7.82 -51.93 -0.41 0.23 16 22 C -0.10 -0.79 4.95 -104.62 -0.52 -1.31 16 23 C -0.07 -0.53 9.37 -39.59 -0.37 -0.90 16 24 C -0.16 -1.28 10.03 -39.52 -0.40 -1.68 16 25 C 0.10 0.92 7.30 -39.42 -0.29 0.63 16 26 F -0.14 -1.43 17.27 2.25 0.04 -1.39 16 27 C -0.15 -1.29 10.03 -39.51 -0.40 -1.69 16 28 C -0.08 -0.63 9.70 -39.59 -0.38 -1.01 16 29 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 30 H 0.09 1.62 8.14 -51.92 -0.42 1.20 16 31 H 0.09 1.60 8.14 -51.91 -0.42 1.18 16 32 H 0.40 3.74 8.32 -40.82 -0.34 3.40 16 33 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 34 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.08 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.09 0.60 7.67 -51.93 -0.40 0.20 16 37 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.14 0.99 7.54 -52.49 -0.40 0.59 16 40 H 0.14 0.87 8.06 -52.49 -0.42 0.45 16 41 H 0.14 0.97 8.06 -52.48 -0.42 0.55 16 42 H 0.14 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 375.03 15.07 5.65 5.65 Total: -1.00 -34.50 375.03 -9.37 -43.86 By element: Atomic # 1 Polarization: 6.18 SS G_CDS: -5.72 Total: 0.46 kcal Atomic # 6 Polarization: -9.49 SS G_CDS: -2.24 Total: -11.73 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: 0.41 Total: -34.52 kcal Atomic # 8 Polarization: -14.42 SS G_CDS: -0.28 Total: -14.70 kcal Atomic # 9 Polarization: -1.43 SS G_CDS: 0.04 Total: -1.39 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Atomic # 16 Polarization: -1.60 SS G_CDS: -2.21 Total: -3.81 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -34.50 -9.37 -43.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347721411.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.387 kcal (2) G-P(sol) polarization free energy of solvation -34.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.864 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds