Wall clock time and date at job start Tue Mar 31 2020 22:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86798 * 120.00305 * 2 1 4 4 H 1.48498 * 109.47416 * 240.00212 * 3 2 1 5 5 H 1.48508 * 109.46609 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46903 * 119.99797 * 3 2 1 7 7 C 1.38805 * 120.00030 * 180.02562 * 2 1 3 8 8 H 1.07991 * 119.99906 * 179.97438 * 7 2 1 9 9 S 1.76203 * 119.99580 * 359.71792 * 7 2 1 10 10 C 1.81002 * 99.99786 * 180.02562 * 9 7 2 11 11 C 1.50702 * 109.47279 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99904 * 359.97438 * 11 10 9 13 13 N 1.34771 * 119.99698 * 179.97438 * 11 10 9 14 14 C 1.46504 * 119.99917 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47543 * 180.02562 * 14 13 11 16 16 H 1.09006 * 110.45170 * 303.84780 * 15 14 13 17 17 C 1.54506 * 110.50973 * 66.45212 * 15 14 13 18 18 C 1.54479 * 104.06084 * 118.64840 * 17 15 14 19 19 O 1.44425 * 104.80529 * 23.97862 * 18 17 15 20 20 C 1.44433 * 105.27142 * 319.48634 * 19 18 17 21 21 H 1.09000 * 110.37124 * 281.67936 * 20 19 18 22 22 C 1.50703 * 110.37210 * 159.34471 * 20 19 18 23 23 C 1.38252 * 119.96965 * 329.34616 * 22 20 19 24 24 C 1.38202 * 120.01654 * 179.76926 * 23 22 20 25 25 C 1.38453 * 119.97826 * 0.50118 * 24 23 22 26 26 F 1.35105 * 120.02495 * 179.76875 * 25 24 23 27 27 C 1.38454 * 119.94973 * 359.75266 * 25 24 23 28 28 C 1.38205 * 119.97397 * 359.97438 * 27 25 24 29 29 H 0.97000 * 119.99668 * 359.97438 * 1 2 3 30 30 H 1.09002 * 109.47407 * 300.00715 * 10 9 7 31 31 H 1.09004 * 109.47205 * 60.00275 * 10 9 7 32 32 H 0.97002 * 120.00537 * 0.02562 * 13 11 10 33 33 H 1.09010 * 109.47056 * 300.00359 * 14 13 11 34 34 H 1.08995 * 109.46980 * 59.99570 * 14 13 11 35 35 H 1.09004 * 110.51070 * 237.28865 * 17 15 14 36 36 H 1.09000 * 110.51598 * 0.02562 * 17 15 14 37 37 H 1.08998 * 110.37425 * 142.80781 * 18 17 15 38 38 H 1.09001 * 110.37154 * 265.14412 * 18 17 15 39 39 H 1.07997 * 119.98853 * 0.02562 * 23 22 20 40 40 H 1.08001 * 120.00782 * 180.25277 * 24 23 22 41 41 H 1.08007 * 120.01769 * 179.97438 * 27 25 24 42 42 H 1.07997 * 119.98631 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 3.1041 1.6964 -1.2125 5 1 1.2853 2.7464 0.0006 6 1 3.1041 1.6963 1.2126 7 6 2.0104 -1.2021 -0.0005 8 1 3.0903 -1.2021 -0.0010 9 16 1.1293 -2.7280 0.0063 10 6 2.5158 -3.8915 0.0035 11 6 1.9873 -5.3028 0.0081 12 8 0.7910 -5.5023 0.0132 13 7 2.8441 -6.3431 0.0065 14 6 2.3304 -7.7151 0.0115 15 6 3.5024 -8.6986 0.0090 16 1 4.1565 -8.5096 -0.8422 17 6 4.2939 -8.6009 1.3323 18 6 4.1632 -10.0095 1.9528 19 8 3.9029 -10.8834 0.8328 20 6 2.9870 -10.1547 -0.0135 21 1 1.9756 -10.2056 0.3897 22 6 3.0215 -10.7018 -1.4173 23 6 4.1877 -11.2524 -1.9155 24 6 4.2191 -11.7587 -3.2010 25 6 3.0851 -11.7050 -3.9936 26 9 3.1161 -12.1955 -5.2521 27 6 1.9193 -11.1486 -3.4954 28 6 1.8886 -10.6480 -2.2075 29 1 -0.4850 0.8401 0.0004 30 1 3.1211 -3.7334 -0.8891 31 1 3.1278 -3.7295 0.8908 32 1 3.8009 -6.1835 0.0027 33 1 1.7255 -7.8734 0.9045 34 1 1.7179 -7.8770 -0.8754 35 1 5.3399 -8.3659 1.1352 36 1 3.8501 -7.8522 1.9885 37 1 5.0917 -10.2937 2.4479 38 1 3.3322 -10.0381 2.6576 39 1 5.0732 -11.2906 -1.2984 40 1 5.1290 -12.1925 -3.5886 41 1 1.0342 -11.1058 -4.1128 42 1 0.9794 -10.2135 -1.8189 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347721411.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:54 Heat of formation + Delta-G solvation = -131.208438 kcal Electronic energy + Delta-G solvation = -25750.791714 eV Core-core repulsion = 21735.192118 eV Total energy + Delta-G solvation = -4015.599596 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.92771 -41.39766 -40.41099 -39.30130 -36.27506 -34.57666 -33.43260 -32.62609 -32.10624 -30.93370 -29.09190 -27.67643 -26.17083 -24.47584 -23.69569 -22.56210 -21.63329 -21.41971 -19.83029 -18.75676 -17.97568 -17.83919 -17.52896 -17.14873 -16.87055 -16.63861 -16.62309 -16.34177 -16.01631 -15.80226 -15.56693 -15.03479 -14.72184 -14.59014 -14.47306 -14.41999 -14.12985 -13.98559 -13.73592 -13.33248 -13.16237 -12.93897 -12.86048 -12.67291 -12.52329 -12.23448 -12.05849 -11.89468 -11.73983 -11.61756 -11.12221 -10.97910 -10.81537 -10.26946 -10.13906 -10.07919 -9.58569 -8.65714 -8.33935 -6.11815 0.05690 0.25328 1.27649 1.44354 1.47572 1.57095 1.62432 2.24239 2.29388 2.49192 2.89467 3.00184 3.26000 3.32202 3.46109 3.65580 3.71415 3.78891 3.92464 4.01771 4.08563 4.17565 4.22491 4.28589 4.33252 4.35662 4.45011 4.52789 4.62815 4.71514 4.85609 4.93446 4.93964 4.99864 5.09652 5.14079 5.15131 5.24025 5.41595 5.42561 5.44914 5.83635 5.88258 6.20300 6.49945 7.07415 7.24644 8.74936 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.015471 B = 0.002110 C = 0.001960 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1809.360603 B =13265.210736 C =14281.372413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.262 1.262 5 H -0.280 1.280 6 H -0.261 1.261 7 C -0.546 4.546 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.130 4.130 11 C 0.534 3.466 12 O -0.565 6.565 13 N -0.710 5.710 14 C 0.131 3.869 15 C -0.113 4.113 16 H 0.100 0.900 17 C -0.151 4.151 18 C 0.041 3.959 19 O -0.377 6.377 20 C 0.128 3.872 21 H 0.088 0.912 22 C -0.100 4.100 23 C -0.068 4.068 24 C -0.157 4.157 25 C 0.079 3.921 26 F -0.150 7.150 27 C -0.159 4.159 28 C -0.084 4.084 29 H 0.271 0.729 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.416 0.584 33 H 0.065 0.935 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.083 0.917 37 H 0.110 0.890 38 H 0.065 0.935 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.147 0.853 42 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.625 -25.177 -0.499 28.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.187 1.187 5 H -0.205 1.205 6 H -0.186 1.186 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.281 4.281 11 C 0.320 3.680 12 O -0.443 6.443 13 N -0.364 5.364 14 C 0.007 3.993 15 C -0.132 4.132 16 H 0.118 0.882 17 C -0.188 4.188 18 C -0.035 4.035 19 O -0.296 6.296 20 C 0.070 3.930 21 H 0.106 0.894 22 C -0.100 4.100 23 C -0.086 4.086 24 C -0.176 4.176 25 C 0.060 3.940 26 F -0.129 7.129 27 C -0.177 4.177 28 C -0.102 4.102 29 H 0.080 0.920 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.253 0.747 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.102 0.898 37 H 0.128 0.872 38 H 0.084 0.916 39 H 0.166 0.834 40 H 0.169 0.831 41 H 0.165 0.835 42 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 11.584 -25.678 -0.571 28.175 hybrid contribution 1.603 1.389 -0.377 2.154 sum 13.187 -24.289 -0.948 27.654 Atomic orbital electron populations 1.70178 1.07963 1.28651 1.47983 1.26127 0.95961 1.03323 0.93782 0.85017 0.77810 0.75750 0.79506 1.18695 1.20500 1.18597 1.23173 0.95348 0.92019 1.58876 0.89873 1.85577 1.10620 0.99242 1.97053 1.23374 1.03517 0.94401 1.06821 1.20032 0.86216 0.86635 0.75115 1.90698 1.17396 1.86089 1.50095 1.45680 1.10285 1.04883 1.75586 1.21353 0.95999 0.79783 1.02168 1.22708 0.96598 0.93293 1.00600 0.88218 1.23089 1.02103 0.98383 0.95261 1.23582 1.02660 0.88299 0.88943 1.89149 1.64874 1.40611 1.34990 1.21650 0.94694 0.88900 0.87753 0.89402 1.19788 0.94347 1.00764 0.95124 1.21010 0.98561 0.95060 0.93953 1.21378 0.98213 1.03079 0.94921 1.18035 0.96220 0.99662 0.80106 1.91481 1.97211 1.85824 1.38353 1.21316 0.97938 1.01059 0.97416 1.21035 0.98708 0.97613 0.92881 0.92015 0.87322 0.87066 0.74683 0.91631 0.91996 0.88591 0.89795 0.87168 0.91627 0.83375 0.83133 0.83510 0.83526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.57 13.22 21.65 0.29 -55.28 16 2 C 0.01 0.72 5.49 84.86 0.47 1.19 16 3 Si 1.00 43.01 29.55 68.60 2.03 45.04 16 4 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 5 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 6 H -0.26 -10.65 7.11 99.48 0.71 -9.94 16 7 C -0.55 -30.71 9.50 67.96 0.65 -30.07 16 8 H 0.08 4.31 7.80 -2.92 -0.02 4.29 16 9 S -0.15 -8.29 20.57 -56.49 -1.16 -9.45 16 10 C -0.13 -4.91 6.16 71.24 0.44 -4.47 16 11 C 0.53 18.47 7.85 87.66 0.69 19.16 16 12 O -0.56 -25.00 15.86 -3.03 -0.05 -25.04 16 13 N -0.71 -15.72 5.33 -463.05 -2.47 -18.19 16 14 C 0.13 2.47 4.79 86.38 0.41 2.88 16 15 C -0.11 -1.43 2.72 -9.78 -0.03 -1.46 16 16 H 0.10 1.21 7.87 -2.38 -0.02 1.19 16 17 C -0.15 -1.49 6.43 31.61 0.20 -1.29 16 18 C 0.04 0.43 7.63 72.48 0.55 0.98 16 19 O -0.38 -5.59 10.40 -148.98 -1.55 -7.14 16 20 C 0.13 1.78 3.05 30.35 0.09 1.87 16 21 H 0.09 1.18 7.82 -2.39 -0.02 1.17 16 22 C -0.10 -1.52 4.95 -19.86 -0.10 -1.62 16 23 C -0.07 -0.99 9.37 22.26 0.21 -0.78 16 24 C -0.16 -2.39 10.03 22.31 0.22 -2.16 16 25 C 0.08 1.42 7.30 22.37 0.16 1.58 16 26 F -0.15 -3.03 17.27 44.97 0.78 -2.25 16 27 C -0.16 -2.62 10.03 22.31 0.22 -2.40 16 28 C -0.08 -1.30 9.70 22.26 0.22 -1.08 16 29 H 0.27 15.37 8.31 -92.71 -0.77 14.60 16 30 H 0.11 3.70 8.14 -2.39 -0.02 3.68 16 31 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 32 H 0.42 6.42 8.32 -92.71 -0.77 5.65 16 33 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.06 1.32 8.14 -2.39 -0.02 1.30 16 35 H 0.10 0.70 8.14 -2.38 -0.02 0.68 16 36 H 0.08 0.92 7.67 -2.39 -0.02 0.90 16 37 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 38 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.15 1.80 7.54 -2.91 -0.02 1.78 16 40 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 41 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 42 H 0.15 1.86 8.06 -2.91 -0.02 1.84 16 Total: -1.00 -76.37 375.03 2.54 -73.83 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: 0.27 Total: 16.15 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: 4.41 Total: -17.66 kcal Atomic # 7 Polarization: -71.29 SS G_CDS: -2.18 Total: -73.48 kcal Atomic # 8 Polarization: -30.58 SS G_CDS: -1.60 Total: -32.18 kcal Atomic # 9 Polarization: -3.03 SS G_CDS: 0.78 Total: -2.25 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Atomic # 16 Polarization: -8.29 SS G_CDS: -1.16 Total: -9.45 kcal Total: -76.37 2.54 -73.83 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347721411.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.383 kcal (2) G-P(sol) polarization free energy of solvation -76.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.751 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds