Wall clock time and date at job start Tue Mar 31 2020 22:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86797 * 119.99702 * 2 1 4 4 H 1.48507 * 109.47125 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47190 * 299.99871 * 3 2 1 6 6 H 1.48496 * 109.47312 * 59.99776 * 3 2 1 7 7 C 1.38797 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99584 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00413 * 0.02562 * 7 2 1 10 10 C 1.80996 * 99.99998 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47276 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99503 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00081 * 179.72626 * 11 10 9 14 14 C 1.46506 * 119.99968 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47161 * 179.97438 * 14 13 11 16 16 H 1.08995 * 110.43933 * 54.29567 * 15 14 13 17 17 C 1.54814 * 110.48546 * 291.74805 * 15 14 13 18 18 C 1.55219 * 101.99056 * 220.52017 * 17 15 14 19 19 O 1.44379 * 103.56550 * 36.88150 * 18 17 15 20 20 C 1.43745 * 106.97533 * 320.01291 * 19 18 17 21 21 H 1.09000 * 110.00190 * 267.01751 * 20 19 18 22 22 C 1.50703 * 109.88025 * 145.93734 * 20 19 18 23 23 C 1.38249 * 119.96901 * 326.89167 * 22 20 19 24 24 C 1.38201 * 120.02139 * 179.76647 * 23 22 20 25 25 C 1.38457 * 119.97340 * 0.51346 * 24 23 22 26 26 F 1.35102 * 120.02673 * 179.76842 * 25 24 23 27 27 C 1.38458 * 119.95037 * 359.74045 * 25 24 23 28 28 C 1.38200 * 119.97567 * 0.02562 * 27 25 24 29 29 H 0.97001 * 120.00629 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47654 * 60.00189 * 10 9 7 31 31 H 1.08998 * 109.47543 * 300.00143 * 10 9 7 32 32 H 0.96998 * 120.00525 * 359.97438 * 13 11 10 33 33 H 1.09004 * 109.46587 * 299.99661 * 14 13 11 34 34 H 1.08998 * 109.47213 * 59.99069 * 14 13 11 35 35 H 1.08997 * 110.91073 * 338.64545 * 17 15 14 36 36 H 1.09004 * 110.90325 * 102.25132 * 17 15 14 37 37 H 1.09003 * 110.52185 * 278.39076 * 18 17 15 38 38 H 1.08996 * 110.78663 * 155.50432 * 18 17 15 39 39 H 1.07992 * 119.99088 * 0.02562 * 23 22 20 40 40 H 1.08001 * 120.01193 * 180.25733 * 24 23 22 41 41 H 1.08004 * 120.01649 * 179.97438 * 27 25 24 42 42 H 1.07993 * 119.99120 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8913 0.0021 11 6 1.9875 -5.3027 0.0030 12 8 0.7912 -5.5023 0.0030 13 7 2.8443 -6.3430 -0.0013 14 6 2.3306 -7.7151 -0.0011 15 6 3.5026 -8.6985 -0.0071 16 1 4.1807 -8.4876 0.8198 17 6 4.2576 -8.6333 -1.3572 18 6 4.5580 -10.1312 -1.6313 19 8 3.3789 -10.8077 -1.1447 20 6 2.9897 -10.1494 0.0725 21 1 3.4370 -10.6541 0.9288 22 6 1.4882 -10.1558 0.2010 23 6 0.6978 -10.0780 -0.9306 24 6 -0.6792 -10.0886 -0.8144 25 6 -1.2672 -10.1665 0.4367 26 9 -2.6133 -10.1723 0.5519 27 6 -0.4746 -10.2391 1.5697 28 6 0.9022 -10.2332 1.4507 29 1 -0.4851 0.8400 -0.0004 30 1 3.1239 -3.7309 0.8925 31 1 3.1252 -3.7317 -0.8874 32 1 3.8010 -6.1835 -0.0054 33 1 1.7253 -7.8762 0.8910 34 1 1.7186 -7.8741 -0.8889 35 1 3.6226 -8.2149 -2.1381 36 1 5.1801 -8.0610 -1.2596 37 1 5.4403 -10.4516 -1.0772 38 1 4.6903 -10.3103 -2.6982 39 1 1.1567 -10.0130 -1.9061 40 1 -1.2965 -10.0320 -1.6988 41 1 -0.9321 -10.2996 2.5462 42 1 1.5207 -10.2894 2.3343 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000347721412.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:57 Heat of formation + Delta-G solvation = -104.572433 kcal Electronic energy + Delta-G solvation = -26452.739313 eV Core-core repulsion = 22438.294741 eV Total energy + Delta-G solvation = -4014.444572 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -48.98455 -40.87597 -38.99373 -38.49617 -35.16103 -32.55452 -32.43229 -31.85997 -31.34266 -29.54590 -28.14112 -25.70361 -25.25431 -23.54834 -23.10211 -22.00750 -20.49235 -20.26538 -17.96717 -17.78615 -17.22723 -16.85372 -16.49723 -16.05833 -15.72700 -15.56246 -15.31045 -15.10787 -14.91079 -14.81251 -14.13518 -14.04608 -13.97264 -13.73752 -13.26447 -13.19269 -13.02156 -12.66368 -12.50645 -12.34593 -12.03746 -11.74495 -11.58467 -11.31733 -11.19335 -11.07859 -11.04582 -11.02337 -10.76363 -10.16708 -9.81277 -9.39910 -9.31612 -9.08431 -8.85688 -8.72769 -8.23424 -6.50589 -6.22385 -3.92967 0.89020 1.05278 3.00586 3.10182 3.20780 3.22713 3.27695 3.31893 3.57426 3.67569 4.02965 4.12851 4.19290 4.20457 4.44343 4.52864 4.58818 4.72502 4.80829 4.88640 4.99906 5.05928 5.10818 5.12808 5.19346 5.32263 5.36675 5.39839 5.60061 5.61065 5.68379 5.71783 5.76980 5.88108 5.90878 5.94236 6.03033 6.12192 6.17636 6.51010 6.59186 6.68268 7.58909 7.68988 8.34525 8.61433 9.22945 10.85064 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013453 B = 0.002647 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.777978 B =10574.616561 C =12203.443809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.153 4.153 11 C 0.530 3.470 12 O -0.514 6.514 13 N -0.740 5.740 14 C 0.131 3.869 15 C -0.128 4.128 16 H 0.095 0.905 17 C -0.153 4.153 18 C 0.046 3.954 19 O -0.365 6.365 20 C 0.131 3.869 21 H 0.084 0.916 22 C -0.102 4.102 23 C -0.063 4.063 24 C -0.152 4.152 25 C 0.104 3.896 26 F -0.139 7.139 27 C -0.152 4.152 28 C -0.082 4.082 29 H 0.268 0.732 30 H 0.089 0.911 31 H 0.089 0.911 32 H 0.396 0.604 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.096 0.904 39 H 0.136 0.864 40 H 0.136 0.864 41 H 0.137 0.863 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.741 -24.435 -0.135 26.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.684 4.684 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.316 3.684 12 O -0.388 6.388 13 N -0.395 5.395 14 C 0.007 3.993 15 C -0.147 4.147 16 H 0.113 0.887 17 C -0.190 4.190 18 C -0.031 4.031 19 O -0.284 6.284 20 C 0.072 3.928 21 H 0.102 0.898 22 C -0.103 4.103 23 C -0.081 4.081 24 C -0.170 4.170 25 C 0.085 3.915 26 F -0.118 7.118 27 C -0.171 4.171 28 C -0.100 4.100 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.230 0.770 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.103 0.897 36 H 0.104 0.896 37 H 0.081 0.919 38 H 0.114 0.886 39 H 0.153 0.847 40 H 0.154 0.846 41 H 0.154 0.846 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.394 -24.847 -0.226 25.925 hybrid contribution 2.280 1.606 0.151 2.793 sum 9.674 -23.241 -0.075 25.174 Atomic orbital electron populations 1.70028 1.05950 1.27356 1.46901 1.24995 0.95025 0.99038 0.94549 0.86116 0.79561 0.81894 0.77911 1.19631 1.20560 1.20566 1.22906 0.94922 0.91666 1.58872 0.90906 1.85430 1.04902 0.96318 1.96701 1.23528 1.06560 0.95448 1.04831 1.20309 0.86561 0.86249 0.75262 1.90718 1.15322 1.85570 1.47210 1.46022 1.09813 1.05485 1.78135 1.21511 0.94750 0.80127 1.02932 1.22818 0.97762 0.94763 0.99379 0.88680 1.23327 1.01282 0.97483 0.96942 1.23616 0.88395 0.90626 1.00433 1.88934 1.44695 1.55445 1.39343 1.21460 0.90971 0.91421 0.88927 0.89814 1.19709 0.94504 1.02350 0.93689 1.20814 0.92074 0.96170 0.99078 1.21184 0.95890 1.03442 0.96512 1.17767 0.77054 1.02024 0.94658 1.91511 1.29568 1.93787 1.96927 1.21080 0.93965 1.03915 0.98112 1.20744 0.93921 0.98411 0.96941 0.92226 0.89304 0.89298 0.77038 0.91111 0.91054 0.89721 0.89639 0.91912 0.88614 0.84650 0.84581 0.84555 0.84935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.17 13.22 55.49 0.73 -25.44 16 2 C 0.07 2.09 5.49 -17.43 -0.10 1.99 16 3 Si 0.92 21.34 29.55 -169.99 -5.02 16.31 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 6 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 7 C -0.54 -15.22 9.50 30.94 0.29 -14.93 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.05 6.16 36.01 0.22 -2.83 16 11 C 0.53 9.80 7.85 -10.98 -0.09 9.71 16 12 O -0.51 -11.77 15.86 5.56 0.09 -11.68 16 13 N -0.74 -9.45 5.42 -60.29 -0.33 -9.78 16 14 C 0.13 1.49 3.79 -4.04 -0.02 1.47 16 15 C -0.13 -0.96 3.08 -89.09 -0.27 -1.24 16 16 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 17 C -0.15 -0.99 6.49 -24.60 -0.16 -1.15 16 18 C 0.05 0.28 7.72 38.33 0.30 0.58 16 19 O -0.37 -3.20 10.29 -35.23 -0.36 -3.56 16 20 C 0.13 1.03 3.64 -27.31 -0.10 0.93 16 21 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 22 C -0.10 -0.97 3.32 -104.61 -0.35 -1.32 16 23 C -0.06 -0.66 7.76 -39.59 -0.31 -0.96 16 24 C -0.15 -1.69 10.03 -39.51 -0.40 -2.09 16 25 C 0.10 1.25 7.30 -39.42 -0.29 0.96 16 26 F -0.14 -1.82 17.27 2.25 0.04 -1.78 16 27 C -0.15 -1.57 10.03 -39.51 -0.40 -1.97 16 28 C -0.08 -0.75 8.88 -39.59 -0.35 -1.10 16 29 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 30 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 31 H 0.09 1.63 8.14 -51.92 -0.42 1.20 16 32 H 0.40 3.79 8.38 -40.82 -0.34 3.45 16 33 H 0.07 0.91 6.66 -51.93 -0.35 0.57 16 34 H 0.07 0.93 6.45 -51.93 -0.33 0.59 16 35 H 0.08 0.66 7.80 -51.93 -0.41 0.25 16 36 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 38 H 0.10 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.14 1.30 7.59 -52.49 -0.40 0.90 16 40 H 0.14 1.33 8.06 -52.49 -0.42 0.91 16 41 H 0.14 1.17 8.06 -52.48 -0.42 0.75 16 42 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 LS Contribution 368.63 15.07 5.56 5.56 Total: -1.00 -35.52 368.63 -9.11 -44.63 By element: Atomic # 1 Polarization: 7.11 SS G_CDS: -5.59 Total: 1.52 kcal Atomic # 6 Polarization: -9.93 SS G_CDS: -2.01 Total: -11.93 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.41 Total: -35.22 kcal Atomic # 8 Polarization: -14.96 SS G_CDS: -0.27 Total: -15.24 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -35.52 -9.11 -44.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347721412.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.945 kcal (2) G-P(sol) polarization free energy of solvation -35.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.572 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds