Wall clock time and date at job start Tue Mar 31 2020 22:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31631 * 1 3 3 Si 1.86797 * 119.99702 * 2 1 4 4 H 1.48507 * 109.47125 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.47190 * 299.99871 * 3 2 1 6 6 H 1.48496 * 109.47312 * 59.99776 * 3 2 1 7 7 C 1.38797 * 119.99814 * 179.97438 * 2 1 3 8 8 H 1.08007 * 119.99584 * 180.02562 * 7 2 1 9 9 S 1.76195 * 120.00413 * 0.02562 * 7 2 1 10 10 C 1.80996 * 99.99998 * 180.02562 * 9 7 2 11 11 C 1.50706 * 109.47276 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99503 * 359.97438 * 11 10 9 13 13 N 1.34773 * 120.00081 * 179.72626 * 11 10 9 14 14 C 1.46506 * 119.99968 * 180.02562 * 13 11 10 15 15 C 1.52992 * 109.47161 * 179.97438 * 14 13 11 16 16 H 1.08995 * 110.43933 * 54.29567 * 15 14 13 17 17 C 1.54814 * 110.48546 * 291.74805 * 15 14 13 18 18 C 1.55219 * 101.99056 * 220.52017 * 17 15 14 19 19 O 1.44379 * 103.56550 * 36.88150 * 18 17 15 20 20 C 1.43745 * 106.97533 * 320.01291 * 19 18 17 21 21 H 1.09000 * 110.00190 * 267.01751 * 20 19 18 22 22 C 1.50703 * 109.88025 * 145.93734 * 20 19 18 23 23 C 1.38249 * 119.96901 * 326.89167 * 22 20 19 24 24 C 1.38201 * 120.02139 * 179.76647 * 23 22 20 25 25 C 1.38457 * 119.97340 * 0.51346 * 24 23 22 26 26 F 1.35102 * 120.02673 * 179.76842 * 25 24 23 27 27 C 1.38458 * 119.95037 * 359.74045 * 25 24 23 28 28 C 1.38200 * 119.97567 * 0.02562 * 27 25 24 29 29 H 0.97001 * 120.00629 * 0.02562 * 1 2 3 30 30 H 1.09001 * 109.47654 * 60.00189 * 10 9 7 31 31 H 1.08998 * 109.47543 * 300.00143 * 10 9 7 32 32 H 0.96998 * 120.00525 * 359.97438 * 13 11 10 33 33 H 1.09004 * 109.46587 * 299.99661 * 14 13 11 34 34 H 1.08998 * 109.47213 * 59.99069 * 14 13 11 35 35 H 1.08997 * 110.91073 * 338.64545 * 17 15 14 36 36 H 1.09004 * 110.90325 * 102.25132 * 17 15 14 37 37 H 1.09003 * 110.52185 * 278.39076 * 18 17 15 38 38 H 1.08996 * 110.78663 * 155.50432 * 18 17 15 39 39 H 1.07992 * 119.99088 * 0.02562 * 23 22 20 40 40 H 1.08001 * 120.01193 * 180.25733 * 24 23 22 41 41 H 1.08004 * 120.01649 * 179.97438 * 27 25 24 42 42 H 1.07993 * 119.99120 * 179.97438 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 3.7103 1.3465 0.0006 5 1 1.8914 2.3964 -1.2125 6 1 1.8914 2.3965 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0010 9 16 1.1293 -2.7280 0.0005 10 6 2.5159 -3.8913 0.0021 11 6 1.9875 -5.3027 0.0030 12 8 0.7912 -5.5023 0.0030 13 7 2.8443 -6.3430 -0.0013 14 6 2.3306 -7.7151 -0.0011 15 6 3.5026 -8.6985 -0.0071 16 1 4.1807 -8.4876 0.8198 17 6 4.2576 -8.6333 -1.3572 18 6 4.5580 -10.1312 -1.6313 19 8 3.3789 -10.8077 -1.1447 20 6 2.9897 -10.1494 0.0725 21 1 3.4370 -10.6541 0.9288 22 6 1.4882 -10.1558 0.2010 23 6 0.6978 -10.0780 -0.9306 24 6 -0.6792 -10.0886 -0.8144 25 6 -1.2672 -10.1665 0.4367 26 9 -2.6133 -10.1723 0.5519 27 6 -0.4746 -10.2391 1.5697 28 6 0.9022 -10.2332 1.4507 29 1 -0.4851 0.8400 -0.0004 30 1 3.1239 -3.7309 0.8925 31 1 3.1252 -3.7317 -0.8874 32 1 3.8010 -6.1835 -0.0054 33 1 1.7253 -7.8762 0.8910 34 1 1.7186 -7.8741 -0.8889 35 1 3.6226 -8.2149 -2.1381 36 1 5.1801 -8.0610 -1.2596 37 1 5.4403 -10.4516 -1.0772 38 1 4.6903 -10.3103 -2.6982 39 1 1.1567 -10.0130 -1.9061 40 1 -1.2965 -10.0320 -1.6988 41 1 -0.9321 -10.2996 2.5462 42 1 1.5207 -10.2894 2.3343 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000347721412.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:56 Heat of formation + Delta-G solvation = -128.386752 kcal Electronic energy + Delta-G solvation = -26453.771979 eV Core-core repulsion = 22438.294741 eV Total energy + Delta-G solvation = -4015.477238 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.93877 -41.59791 -40.36060 -39.21444 -36.24920 -34.58381 -33.51265 -32.54840 -32.12683 -30.91769 -28.92518 -27.69798 -26.36984 -24.25242 -23.82466 -22.68382 -21.77311 -21.10819 -19.80573 -18.74052 -18.01266 -17.87072 -17.52621 -16.99723 -16.88713 -16.79383 -16.62474 -16.54078 -15.80543 -15.75814 -15.58931 -15.12694 -14.77010 -14.67328 -14.49828 -14.47334 -14.10008 -13.88065 -13.47787 -13.24217 -13.15647 -13.08820 -12.91314 -12.60992 -12.42487 -12.26230 -12.03567 -11.92035 -11.71399 -11.62779 -11.15847 -10.97899 -10.67969 -10.26086 -10.24109 -9.95120 -9.54088 -8.66781 -8.34538 -6.12776 0.07459 0.25982 1.27529 1.41767 1.47871 1.58589 1.62757 2.25054 2.29151 2.49749 2.98354 2.99820 3.27467 3.32010 3.39472 3.55544 3.77892 3.80479 3.91830 4.01277 4.08683 4.23622 4.28686 4.31344 4.35340 4.37321 4.50876 4.51370 4.64412 4.76448 4.88040 4.94133 4.94657 4.97858 5.06101 5.14546 5.19711 5.23468 5.42108 5.43331 5.44644 5.87391 5.97461 6.20144 6.52176 7.06851 7.26863 8.74913 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013453 B = 0.002647 C = 0.002294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2080.777978 B =10574.616561 C =12203.443809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.255 1.255 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.544 4.544 8 H 0.084 0.916 9 S -0.156 6.156 10 C -0.128 4.128 11 C 0.531 3.469 12 O -0.567 6.567 13 N -0.709 5.709 14 C 0.131 3.869 15 C -0.117 4.117 16 H 0.124 0.876 17 C -0.151 4.151 18 C 0.044 3.956 19 O -0.386 6.386 20 C 0.133 3.867 21 H 0.110 0.890 22 C -0.104 4.104 23 C -0.073 4.073 24 C -0.167 4.167 25 C 0.073 3.927 26 F -0.153 7.153 27 C -0.159 4.159 28 C -0.081 4.081 29 H 0.271 0.729 30 H 0.111 0.889 31 H 0.111 0.889 32 H 0.417 0.583 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.109 0.891 37 H 0.084 0.916 38 H 0.101 0.899 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.151 0.849 42 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.914 -24.775 0.552 28.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.193 4.193 3 Si 0.822 3.178 4 H -0.178 1.178 5 H -0.200 1.200 6 H -0.200 1.200 7 C -0.692 4.692 8 H 0.102 0.898 9 S 0.071 5.929 10 C -0.279 4.279 11 C 0.317 3.683 12 O -0.445 6.445 13 N -0.364 5.364 14 C 0.008 3.992 15 C -0.136 4.136 16 H 0.142 0.858 17 C -0.189 4.189 18 C -0.031 4.031 19 O -0.306 6.306 20 C 0.074 3.926 21 H 0.128 0.872 22 C -0.104 4.104 23 C -0.092 4.092 24 C -0.186 4.186 25 C 0.054 3.946 26 F -0.132 7.132 27 C -0.178 4.178 28 C -0.099 4.099 29 H 0.080 0.920 30 H 0.129 0.871 31 H 0.129 0.871 32 H 0.254 0.746 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.127 0.873 37 H 0.102 0.898 38 H 0.120 0.880 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.168 0.832 42 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 11.633 -25.227 0.456 27.784 hybrid contribution 1.041 1.577 -0.094 1.892 sum 12.674 -23.650 0.362 26.834 Atomic orbital electron populations 1.70197 1.08038 1.28526 1.48126 1.26146 0.95953 1.03391 0.93766 0.84891 0.78678 0.76266 0.78012 1.17834 1.20027 1.20011 1.23238 0.95365 0.91911 1.58692 0.89776 1.85653 1.10790 0.99418 1.97050 1.23364 1.03429 0.94250 1.06869 1.20101 0.86250 0.86775 0.75182 1.90713 1.17619 1.86131 1.50061 1.45712 1.10246 1.04916 1.75515 1.21582 0.96360 0.79818 1.01439 1.22805 0.96416 0.93178 1.01208 0.85763 1.23341 1.01750 0.98174 0.95589 1.23780 0.88173 0.89971 1.01213 1.88927 1.45906 1.55968 1.39767 1.21579 0.89546 0.91757 0.89685 0.87234 1.20052 0.95870 1.01040 0.93432 1.20944 0.91806 0.96508 0.99893 1.21347 0.96656 1.03996 0.96591 1.18115 0.76796 1.03988 0.95745 1.91464 1.30567 1.94141 1.97032 1.21375 0.94731 1.03469 0.98189 1.21122 0.93603 0.97135 0.98004 0.92043 0.87065 0.87127 0.74575 0.92403 0.93019 0.91511 0.87265 0.89823 0.88047 0.84391 0.84396 0.83166 0.81740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.22 13.22 21.65 0.29 -55.93 16 2 C 0.01 0.68 5.49 84.86 0.47 1.15 16 3 Si 1.00 43.33 29.55 68.60 2.03 45.36 16 4 H -0.25 -10.22 7.11 99.48 0.71 -9.51 16 5 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.54 -30.88 9.50 67.95 0.65 -30.24 16 8 H 0.08 4.40 7.80 -2.91 -0.02 4.38 16 9 S -0.16 -8.68 20.57 -56.49 -1.16 -9.84 16 10 C -0.13 -4.94 6.16 71.24 0.44 -4.50 16 11 C 0.53 19.20 7.85 87.66 0.69 19.89 16 12 O -0.57 -26.59 15.86 -3.04 -0.05 -26.64 16 13 N -0.71 -16.43 5.42 -463.05 -2.51 -18.94 16 14 C 0.13 2.76 3.79 86.38 0.33 3.09 16 15 C -0.12 -1.34 3.08 -9.81 -0.03 -1.37 16 16 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 17 C -0.15 -1.42 6.49 31.97 0.21 -1.21 16 18 C 0.04 0.40 7.72 72.74 0.56 0.96 16 19 O -0.39 -5.76 10.29 -148.98 -1.53 -7.30 16 20 C 0.13 1.68 3.64 30.22 0.11 1.79 16 21 H 0.11 0.90 8.07 -2.39 -0.02 0.88 16 22 C -0.10 -1.83 3.32 -19.86 -0.07 -1.90 16 23 C -0.07 -1.56 7.76 22.26 0.17 -1.38 16 24 C -0.17 -4.00 10.03 22.31 0.22 -3.78 16 25 C 0.07 1.85 7.30 22.37 0.16 2.01 16 26 F -0.15 -4.32 17.27 44.97 0.78 -3.54 16 27 C -0.16 -3.29 10.03 22.31 0.22 -3.07 16 28 C -0.08 -1.35 8.88 22.26 0.20 -1.15 16 29 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 30 H 0.11 3.80 8.14 -2.39 -0.02 3.78 16 31 H 0.11 3.79 8.14 -2.40 -0.02 3.77 16 32 H 0.42 6.29 8.38 -92.71 -0.78 5.52 16 33 H 0.06 1.41 6.66 -2.39 -0.02 1.40 16 34 H 0.05 1.34 6.45 -2.39 -0.02 1.32 16 35 H 0.07 0.90 7.80 -2.39 -0.02 0.88 16 36 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 37 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.14 2.73 7.59 -2.91 -0.02 2.71 16 40 H 0.14 3.03 8.06 -2.91 -0.02 3.00 16 41 H 0.15 2.54 8.06 -2.91 -0.02 2.52 16 42 H 0.17 1.61 8.06 -2.91 -0.02 1.58 16 Total: -1.00 -81.36 368.63 2.44 -78.93 By element: Atomic # 1 Polarization: 17.35 SS G_CDS: 0.27 Total: 17.62 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: 4.33 Total: -19.71 kcal Atomic # 7 Polarization: -72.65 SS G_CDS: -2.22 Total: -74.87 kcal Atomic # 8 Polarization: -32.36 SS G_CDS: -1.58 Total: -33.94 kcal Atomic # 9 Polarization: -4.32 SS G_CDS: 0.78 Total: -3.54 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -81.36 2.44 -78.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000347721412.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.461 kcal (2) G-P(sol) polarization free energy of solvation -81.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds