Wall clock time and date at job start Tue Mar 31 2020 22:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31425 * 1 3 3 Si 1.86802 * 120.00110 * 2 1 4 4 H 1.48498 * 109.47101 * 275.16170 * 3 2 1 5 5 H 1.48506 * 109.46998 * 35.16095 * 3 2 1 6 6 H 1.48499 * 109.47064 * 155.15946 * 3 2 1 7 7 C 1.38893 * 119.99758 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00139 * 4.22796 * 7 2 1 9 9 N 1.37138 * 119.99772 * 184.22240 * 7 2 1 10 10 C 1.34774 * 120.00064 * 117.49560 * 9 7 2 11 11 O 1.21278 * 120.00521 * 186.14039 * 10 9 7 12 12 C 1.50703 * 119.99979 * 6.13566 * 10 9 7 13 13 N 1.46494 * 109.47543 * 174.99195 * 12 10 9 14 14 N 1.28723 * 125.31394 * 89.97548 * 13 12 10 15 15 N 1.28983 * 108.99582 * 180.02562 * 14 13 12 16 16 C 1.34208 * 107.24906 * 0.02562 * 15 14 13 17 17 C 1.47887 * 126.69941 * 179.97438 * 16 15 14 18 18 C 1.35889 * 125.92978 * 0.02956 * 17 16 15 19 19 C 1.40943 * 106.74600 * 179.97438 * 18 17 16 20 20 C 1.34724 * 107.02822 * 359.97438 * 19 18 17 21 21 O 1.34295 * 108.66169 * 0.26227 * 20 19 18 22 22 N 1.28869 * 125.31903 * 270.29197 * 13 12 10 23 23 C 1.39792 * 120.00255 * 297.49883 * 9 7 2 24 24 C 1.38958 * 120.07793 * 187.49562 * 23 9 7 25 25 C 1.38091 * 119.92069 * 179.79194 * 24 23 9 26 26 C 1.38308 * 120.07670 * 0.45743 * 25 24 23 27 27 C 1.38310 * 120.15632 * 359.79720 * 26 25 24 28 28 C 1.38085 * 120.07567 * 359.97438 * 27 26 25 29 29 H 0.96998 * 119.99697 * 0.02562 * 1 2 3 30 30 H 1.09006 * 109.46870 * 54.99436 * 12 10 9 31 31 H 1.09006 * 109.47379 * 294.99801 * 12 10 9 32 32 H 1.08003 * 126.62564 * 0.02562 * 18 17 16 33 33 H 1.08000 * 126.48824 * 180.02562 * 19 18 17 34 34 H 1.08001 * 125.67214 * 180.02562 * 20 19 18 35 35 H 1.07995 * 120.03810 * 359.97438 * 24 23 9 36 36 H 1.08000 * 119.95932 * 180.25732 * 25 24 23 37 37 H 1.07998 * 119.91838 * 179.76623 * 26 25 24 38 38 H 1.07998 * 119.95875 * 179.97438 * 27 26 25 39 39 H 1.08001 * 120.03300 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2483 1.6177 0.0000 4 1 2.3867 2.1094 -1.3944 5 1 1.5045 2.6188 0.8063 6 1 3.5961 1.4111 0.5882 7 6 2.0087 -1.2029 -0.0005 8 1 1.4709 -2.1368 -0.0699 9 7 3.3773 -1.2045 0.0869 10 6 3.9844 -1.7824 1.1423 11 8 5.1859 -1.6878 1.2774 12 6 3.1702 -2.5462 2.1547 13 7 4.0663 -3.1733 3.1292 14 7 4.4666 -2.6335 4.2271 15 7 5.2432 -3.4594 4.8423 16 6 5.3273 -4.5650 4.0862 17 6 6.1076 -5.7846 4.3876 18 6 6.8745 -5.9882 5.4908 19 6 7.4306 -7.2773 5.3665 20 6 6.9795 -7.7914 4.2057 21 8 6.1848 -6.8847 3.6143 22 7 4.5815 -4.3494 3.0186 23 6 4.1427 -0.6068 -0.9186 24 6 5.5257 -0.7414 -0.9140 25 6 6.2783 -0.1531 -1.9113 26 6 5.6578 0.5772 -2.9085 27 6 4.2819 0.7176 -2.9132 28 6 3.5227 0.1282 -1.9218 29 1 -0.4849 0.8401 -0.0004 30 1 2.5892 -3.3163 1.6472 31 1 2.4955 -1.8619 2.6692 32 1 7.0275 -5.2963 6.3058 33 1 8.0923 -7.7618 6.0692 34 1 7.2204 -8.7685 3.8139 35 1 6.0112 -1.3078 -0.1331 36 1 7.3529 -0.2608 -1.9106 37 1 6.2492 1.0393 -3.6851 38 1 3.8007 1.2889 -3.6933 39 1 2.4484 0.2386 -1.9259 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000352021645.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:25:58 Heat of formation + Delta-G solvation = 160.809265 kcal Electronic energy + Delta-G solvation = -28330.317178 eV Core-core repulsion = 24244.149182 eV Total energy + Delta-G solvation = -4086.167996 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.112 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -45.53568 -43.55325 -42.01446 -39.45534 -37.16374 -36.33772 -34.63097 -34.30768 -34.07706 -31.99521 -31.85520 -30.67765 -29.31895 -27.29553 -25.44973 -25.03001 -23.65595 -23.13858 -22.43516 -21.96710 -21.54002 -20.32120 -19.34984 -18.99231 -18.13624 -17.79751 -17.78574 -17.25160 -17.00995 -16.70141 -16.35635 -15.92377 -15.47183 -15.21093 -15.06340 -14.90621 -14.62033 -14.41175 -14.10333 -14.05173 -13.87274 -13.68184 -13.51223 -13.22221 -13.16612 -12.78918 -12.57538 -12.34581 -12.30024 -12.20361 -12.15549 -11.79180 -11.34167 -10.99763 -10.94085 -10.50147 -9.76032 -9.45175 -8.92389 -8.58019 -6.72253 -0.25489 0.13195 0.27158 0.44683 0.55658 1.19234 1.28950 1.30258 1.38256 1.50197 1.52767 1.79520 2.06410 2.19743 2.63233 2.73101 2.97270 3.32873 3.38826 3.75219 3.98379 4.00219 4.06018 4.06935 4.12234 4.26571 4.37622 4.42497 4.57700 4.65227 4.72796 4.74444 4.82512 4.96392 5.01038 5.13242 5.38244 5.49736 5.49907 5.57757 5.63452 5.81414 5.97239 6.00817 6.23687 6.67022 6.94989 7.04266 7.28832 8.40416 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016216 B = 0.003201 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.257535 B = 8745.578429 C = 9756.574867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.872 5.872 2 C 0.068 3.932 3 Si 0.914 3.086 4 H -0.240 1.240 5 H -0.288 1.288 6 H -0.285 1.285 7 C -0.380 4.380 8 H 0.105 0.895 9 N -0.408 5.408 10 C 0.489 3.511 11 O -0.567 6.567 12 C 0.131 3.869 13 N -0.111 5.111 14 N -0.054 5.054 15 N -0.275 5.275 16 C 0.232 3.768 17 C 0.014 3.986 18 C -0.133 4.133 19 C -0.218 4.218 20 C -0.002 4.002 21 O -0.183 6.183 22 N -0.301 5.301 23 C 0.131 3.869 24 C -0.197 4.197 25 C -0.104 4.104 26 C -0.150 4.150 27 C -0.103 4.103 28 C -0.183 4.183 29 H 0.288 0.712 30 H 0.168 0.832 31 H 0.171 0.829 32 H 0.169 0.831 33 H 0.192 0.808 34 H 0.256 0.744 35 H 0.152 0.848 36 H 0.145 0.855 37 H 0.156 0.844 38 H 0.147 0.853 39 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.869 -9.215 3.359 13.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.505 5.505 2 C -0.142 4.142 3 Si 0.740 3.260 4 H -0.164 1.164 5 H -0.216 1.216 6 H -0.211 1.211 7 C -0.506 4.506 8 H 0.123 0.877 9 N -0.119 5.119 10 C 0.278 3.722 11 O -0.450 6.450 12 C 0.009 3.991 13 N -0.023 5.023 14 N -0.047 5.047 15 N -0.147 5.147 16 C -0.046 4.046 17 C -0.038 4.038 18 C -0.156 4.156 19 C -0.237 4.237 20 C -0.071 4.071 21 O -0.078 6.078 22 N -0.152 5.152 23 C 0.036 3.964 24 C -0.217 4.217 25 C -0.122 4.122 26 C -0.169 4.169 27 C -0.122 4.122 28 C -0.204 4.204 29 H 0.098 0.902 30 H 0.186 0.814 31 H 0.188 0.812 32 H 0.186 0.814 33 H 0.210 0.790 34 H 0.272 0.728 35 H 0.169 0.831 36 H 0.163 0.837 37 H 0.174 0.826 38 H 0.164 0.836 39 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 9.714 -8.459 3.218 13.277 hybrid contribution -0.038 0.580 -0.102 0.590 sum 9.676 -7.879 3.116 12.862 Atomic orbital electron populations 1.69659 1.06782 1.29843 1.44250 1.25861 0.95449 1.00511 0.92397 0.86424 0.78550 0.80920 0.80065 1.16421 1.21574 1.21064 1.18983 0.77640 0.95905 1.58040 0.87743 1.41232 1.06859 1.48406 1.15372 1.20925 0.87422 0.81395 0.82449 1.90408 1.15922 1.63167 1.75493 1.22175 0.88565 1.00494 0.87832 1.49671 1.30224 1.07659 1.14733 1.78883 1.09024 1.20932 0.95880 1.75976 1.14606 0.99511 1.24630 1.22334 0.98634 0.94570 0.89110 1.17973 1.05569 0.85761 0.94539 1.22173 0.96802 0.99136 0.97451 1.22228 1.06235 0.94718 1.00504 1.25341 0.92410 0.95266 0.94034 1.84104 1.56383 1.22496 1.44859 1.75050 1.14036 1.02446 1.23643 1.18751 0.91616 0.95672 0.90329 1.22439 0.92693 1.03968 1.02568 1.21405 1.00615 0.96623 0.93587 1.21429 0.94381 1.01106 0.99978 1.21279 0.94603 0.98665 0.97610 1.21183 1.01122 1.01042 0.97018 0.90176 0.81435 0.81156 0.81380 0.79034 0.72840 0.83079 0.83746 0.82612 0.83554 0.85578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -43.24 13.96 21.65 0.30 -42.94 16 2 C 0.07 3.23 4.68 84.91 0.40 3.63 16 3 Si 0.91 40.72 23.57 68.60 1.62 42.33 16 4 H -0.24 -9.93 6.21 99.48 0.62 -9.31 16 5 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 6 H -0.28 -13.97 6.62 99.48 0.66 -13.32 16 7 C -0.38 -17.75 8.03 84.02 0.67 -17.07 16 8 H 0.11 4.99 7.97 -2.91 -0.02 4.96 16 9 N -0.41 -18.65 2.15 -458.90 -0.99 -19.64 16 10 C 0.49 21.44 7.60 87.66 0.67 22.11 16 11 O -0.57 -27.31 12.95 -3.02 -0.04 -27.35 16 12 C 0.13 4.74 5.90 85.64 0.50 5.24 16 13 N -0.11 -4.26 3.48 -190.83 -0.66 -4.93 16 14 N -0.05 -2.14 13.23 37.02 0.49 -1.65 16 15 N -0.27 -10.37 12.53 -52.42 -0.66 -11.03 16 16 C 0.23 8.48 8.20 137.10 1.12 9.60 16 17 C 0.01 0.41 7.26 24.28 0.18 0.59 16 18 C -0.13 -3.03 10.84 22.39 0.24 -2.79 16 19 C -0.22 -3.36 10.89 22.13 0.24 -3.12 16 20 C 0.00 -0.03 12.08 67.01 0.81 0.78 16 21 O -0.18 -4.89 10.67 -6.20 -0.07 -4.95 16 22 N -0.30 -11.69 12.18 -52.38 -0.64 -12.33 16 23 C 0.13 5.91 4.91 38.22 0.19 6.10 16 24 C -0.20 -8.38 8.98 22.41 0.20 -8.17 16 25 C -0.10 -3.54 10.04 22.25 0.22 -3.32 16 26 C -0.15 -4.57 10.04 22.30 0.22 -4.34 16 27 C -0.10 -3.52 10.00 22.25 0.22 -3.30 16 28 C -0.18 -7.69 5.69 22.41 0.13 -7.57 16 29 H 0.29 13.38 8.31 -92.71 -0.77 12.61 16 30 H 0.17 5.28 7.98 -2.38 -0.02 5.26 16 31 H 0.17 5.56 8.13 -2.38 -0.02 5.54 16 32 H 0.17 3.42 8.06 -2.91 -0.02 3.40 16 33 H 0.19 1.49 8.06 -2.91 -0.02 1.46 16 34 H 0.26 1.24 8.06 -2.91 -0.02 1.22 16 35 H 0.15 6.98 4.72 -45.59 -0.22 6.76 16 36 H 0.14 3.97 8.06 -2.91 -0.02 3.95 16 37 H 0.16 3.39 8.06 -2.91 -0.02 3.37 16 38 H 0.15 4.03 8.06 -2.91 -0.02 4.01 16 39 H 0.13 5.60 4.46 -2.91 -0.01 5.58 16 Total: -1.00 -66.75 339.70 6.16 -60.59 By element: Atomic # 1 Polarization: 22.73 SS G_CDS: 0.78 Total: 23.52 kcal Atomic # 6 Polarization: -7.65 SS G_CDS: 6.02 Total: -1.63 kcal Atomic # 7 Polarization: -90.36 SS G_CDS: -2.15 Total: -92.51 kcal Atomic # 8 Polarization: -32.20 SS G_CDS: -0.11 Total: -32.30 kcal Atomic # 14 Polarization: 40.72 SS G_CDS: 1.62 Total: 42.33 kcal Total: -66.75 6.16 -60.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000352021645.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 221.400 kcal (2) G-P(sol) polarization free energy of solvation -66.753 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.162 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.590 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.809 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds