Wall clock time and date at job start Tue Mar 31 2020 22:51:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47122 * 2 1 4 4 N 1.46507 * 109.46764 * 119.99607 * 2 1 3 5 5 C 1.34766 * 120.00115 * 301.12461 * 4 2 1 6 6 O 1.21584 * 120.00391 * 0.02562 * 5 4 2 7 7 N 1.34780 * 119.99923 * 180.02562 * 5 4 2 8 8 C 1.46504 * 120.00034 * 179.97438 * 7 5 4 9 9 C 1.50694 * 109.47194 * 180.02562 * 8 7 5 10 10 O 1.21296 * 119.99880 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00272 * 180.02562 * 9 8 7 12 12 C 1.37100 * 120.00632 * 180.02562 * 11 9 8 13 13 H 1.08004 * 119.99344 * 359.97438 * 12 11 9 14 14 C 1.38943 * 120.00616 * 180.02562 * 12 11 9 15 15 N 1.31419 * 119.99837 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00228 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46996 * 60.00057 * 16 14 12 18 18 H 1.48501 * 109.47054 * 179.97438 * 16 14 12 19 19 H 1.48491 * 109.47145 * 299.99682 * 16 14 12 20 20 C 1.50695 * 109.47246 * 239.99605 * 2 1 3 21 21 C 1.38240 * 119.98525 * 84.47930 * 20 2 1 22 22 C 1.38216 * 120.01291 * 179.72846 * 21 20 2 23 23 C 1.38354 * 119.98392 * 0.54298 * 22 21 20 24 24 Cl 1.73602 * 120.01314 * 179.70195 * 23 22 21 25 25 C 1.38352 * 119.97680 * 359.73496 * 23 22 21 26 26 C 1.38212 * 119.98387 * 359.97438 * 25 23 22 27 27 H 1.09003 * 109.47256 * 300.00113 * 1 2 3 28 28 H 1.09001 * 109.47221 * 60.00140 * 1 2 3 29 29 H 1.08997 * 109.47152 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46917 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46678 * 299.99549 * 3 2 1 32 32 H 1.09003 * 109.47147 * 59.99820 * 3 2 1 33 33 H 0.97005 * 119.99564 * 121.40875 * 4 2 1 34 34 H 0.96993 * 120.00197 * 0.02562 * 7 5 4 35 35 H 1.08994 * 109.47399 * 300.00874 * 8 7 5 36 36 H 1.09004 * 109.46775 * 60.00322 * 8 7 5 37 37 H 0.96999 * 120.00159 * 359.97438 * 11 9 8 38 38 H 0.97003 * 120.00001 * 179.97438 * 15 14 12 39 39 H 1.07996 * 119.99663 * 359.97438 * 21 20 2 40 40 H 1.08002 * 120.01123 * 180.27333 * 22 21 20 41 41 H 1.08000 * 120.00652 * 179.97438 * 25 23 22 42 42 H 1.08001 * 119.99225 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.6741 -0.2434 2.4201 6 8 0.9579 0.7328 2.5316 7 7 2.1237 -0.8785 3.5207 8 6 1.7500 -0.3921 4.8511 9 6 2.3789 -1.2702 5.9019 10 8 3.0716 -2.2097 5.5720 11 7 2.1717 -1.0118 7.2083 12 6 2.7443 -1.8103 8.1644 13 1 3.3611 -2.6468 7.8706 14 6 2.5303 -1.5442 9.5112 15 7 1.7794 -0.5266 9.8687 16 14 3.3099 -2.6327 10.8138 17 1 4.7875 -2.5947 10.6710 18 1 2.9305 -2.1400 12.1624 19 1 2.8318 -4.0282 10.6436 20 6 2.0324 -0.7105 -1.2304 21 6 2.1541 -0.0233 -2.4237 22 6 2.6201 -0.6729 -3.5511 23 6 2.9541 -2.0140 -3.4880 24 17 3.5322 -2.8327 -4.9055 25 6 2.8266 -2.7027 -2.2948 26 6 2.3662 -2.0505 -1.1666 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9562 -0.8901 32 1 1.6767 1.9564 0.8900 33 1 2.5927 -1.4672 1.1074 34 1 2.6953 -1.6570 3.4319 35 1 2.1018 0.6320 4.9757 36 1 0.6654 -0.4189 4.9563 37 1 1.6181 -0.2603 7.4722 38 1 1.6296 -0.3411 10.8090 39 1 1.8888 1.0224 -2.4741 40 1 2.7193 -0.1349 -4.4823 41 1 3.0869 -3.7497 -2.2450 42 1 2.2663 -2.5880 -0.2352 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358280972.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:58 Heat of formation + Delta-G solvation = -47.093207 kcal Electronic energy + Delta-G solvation = -26070.592787 eV Core-core repulsion = 22076.516957 eV Total energy + Delta-G solvation = -3994.075830 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.80672 -39.48448 -38.27796 -37.09033 -35.95849 -34.39599 -33.70153 -32.26276 -31.41943 -31.23233 -29.76987 -27.42662 -27.36420 -24.61297 -23.72798 -23.05604 -21.14299 -19.93911 -19.45576 -18.77152 -18.09222 -17.42211 -16.48418 -15.72908 -15.55180 -15.47107 -15.20077 -14.72199 -14.62664 -14.25219 -14.24424 -14.06080 -13.96037 -13.77566 -13.39470 -13.34636 -12.79641 -12.35691 -12.23622 -12.18669 -11.92586 -11.85014 -11.68152 -11.63369 -11.34308 -11.27258 -11.11400 -11.08790 -10.51360 -10.31915 -9.79698 -9.63215 -9.46992 -9.30690 -8.91576 -8.63846 -8.63400 -8.10588 -6.51884 -3.94026 0.68656 0.86099 1.74115 2.72594 3.13185 3.18729 3.21151 3.25044 3.37392 3.74563 4.07453 4.15839 4.32185 4.37568 4.46514 4.79755 4.87075 4.88950 4.97543 5.07220 5.16747 5.22590 5.42884 5.53629 5.57036 5.62782 5.78462 5.81604 5.82887 5.90237 5.99137 5.99530 6.07346 6.20857 6.26505 6.33762 6.56666 6.75974 7.05869 7.45230 7.91617 8.20653 8.44566 8.77493 9.04036 9.38878 9.86783 10.64855 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021941 B = 0.001902 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.815230 B =14721.495125 C =15760.284985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.235 3.765 3 C -0.164 4.164 4 N -0.745 5.745 5 C 0.709 3.291 6 O -0.591 6.591 7 N -0.724 5.724 8 C 0.129 3.871 9 C 0.428 3.572 10 O -0.599 6.599 11 N -0.549 5.549 12 C -0.306 4.306 13 H 0.105 0.895 14 C 0.026 3.974 15 N -0.894 5.894 16 Si 0.934 3.066 17 H -0.273 1.273 18 H -0.283 1.283 19 H -0.273 1.273 20 C -0.074 4.074 21 C -0.096 4.096 22 C -0.107 4.107 23 C -0.038 4.038 24 Cl -0.073 7.073 25 C -0.104 4.104 26 C -0.105 4.105 27 H 0.091 0.909 28 H 0.062 0.938 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.088 0.912 33 H 0.395 0.605 34 H 0.406 0.594 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.396 0.604 38 H 0.275 0.725 39 H 0.138 0.862 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.463 1.046 -26.054 26.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.149 3.851 3 C -0.222 4.222 4 N -0.402 5.402 5 C 0.409 3.591 6 O -0.470 6.470 7 N -0.382 5.382 8 C 0.001 3.999 9 C 0.213 3.787 10 O -0.485 6.485 11 N -0.183 5.183 12 C -0.435 4.435 13 H 0.122 0.878 14 C -0.177 4.177 15 N -0.535 5.535 16 Si 0.761 3.239 17 H -0.198 1.198 18 H -0.209 1.209 19 H -0.198 1.198 20 C -0.075 4.075 21 C -0.115 4.115 22 C -0.125 4.125 23 C -0.064 4.064 24 Cl -0.044 7.044 25 C -0.122 4.122 26 C -0.123 4.123 27 H 0.109 0.891 28 H 0.081 0.919 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.082 0.918 32 H 0.106 0.894 33 H 0.231 0.769 34 H 0.243 0.757 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.230 0.770 38 H 0.085 0.915 39 H 0.155 0.845 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -0.671 1.318 -26.034 26.076 hybrid contribution 0.665 -0.942 0.652 1.325 sum -0.006 0.376 -25.382 25.385 Atomic orbital electron populations 1.22272 0.92905 1.02635 1.04001 1.18857 0.94350 0.91533 0.80393 1.22331 1.01246 0.94748 1.03874 1.45342 1.56048 1.34841 1.04006 1.15778 0.80456 0.82755 0.80128 1.90837 1.42098 1.28237 1.85870 1.44807 1.54951 1.34316 1.04088 1.20773 1.00245 0.97914 0.80972 1.19774 0.86896 0.88115 0.83871 1.90491 1.44009 1.33045 1.80991 1.41781 1.44281 1.28445 1.03841 1.19672 1.28103 1.10446 0.85272 0.87759 1.25325 0.96927 0.97142 0.98332 1.69610 1.37434 1.27892 1.18518 0.85868 0.79430 0.79745 0.78896 1.19794 1.20859 1.19791 1.20040 0.98352 0.94076 0.95050 1.21005 0.98804 1.00431 0.91252 1.21058 0.99346 0.92599 0.99519 1.20974 1.03187 0.93542 0.88743 1.98379 1.87363 1.79106 1.39585 1.21061 0.99586 1.00595 0.91003 1.20971 0.98868 0.94030 0.98466 0.89057 0.91935 0.92596 0.92448 0.91760 0.89360 0.76923 0.75689 0.90017 0.89999 0.77014 0.91537 0.84454 0.84747 0.84679 0.84836 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 8.37 37.16 0.31 -1.36 16 2 C 0.24 2.36 0.89 -132.97 -0.12 2.24 16 3 C -0.16 -1.66 7.86 37.16 0.29 -1.36 16 4 N -0.74 -8.47 4.88 -53.50 -0.26 -8.73 16 5 C 0.71 10.67 7.98 -86.93 -0.69 9.98 16 6 O -0.59 -10.31 12.55 5.29 0.07 -10.24 16 7 N -0.72 -11.65 5.53 -66.42 -0.37 -12.02 16 8 C 0.13 2.33 6.15 -5.19 -0.03 2.30 16 9 C 0.43 9.65 7.85 -10.99 -0.09 9.57 16 10 O -0.60 -15.08 15.24 5.54 0.08 -14.99 16 11 N -0.55 -13.45 5.29 -10.97 -0.06 -13.51 16 12 C -0.31 -8.23 9.68 -14.93 -0.14 -8.38 16 13 H 0.10 2.92 7.16 -52.48 -0.38 2.55 16 14 C 0.03 0.67 5.50 -17.47 -0.10 0.57 16 15 N -0.89 -23.71 13.05 55.50 0.72 -22.98 16 16 Si 0.93 20.41 29.55 -169.99 -5.02 15.39 16 17 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 20 C -0.07 -0.64 4.80 -104.62 -0.50 -1.14 16 21 C -0.10 -0.71 9.15 -39.59 -0.36 -1.08 16 22 C -0.11 -0.78 9.83 -39.55 -0.39 -1.16 16 23 C -0.04 -0.31 6.32 -39.50 -0.25 -0.56 16 24 Cl -0.07 -0.57 28.96 -51.86 -1.50 -2.08 16 25 C -0.10 -0.81 9.83 -39.55 -0.39 -1.20 16 26 C -0.10 -0.85 9.02 -39.59 -0.36 -1.21 16 27 H 0.09 1.19 6.08 -51.93 -0.32 0.88 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 29 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 31 H 0.06 0.50 6.52 -51.93 -0.34 0.16 16 32 H 0.09 1.13 6.25 -51.93 -0.32 0.81 16 33 H 0.39 3.77 6.42 -40.82 -0.26 3.51 16 34 H 0.41 6.41 7.45 -40.82 -0.30 6.10 16 35 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.40 9.34 7.90 -40.82 -0.32 9.01 16 38 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 39 H 0.14 0.79 6.34 -52.49 -0.33 0.46 16 40 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 41 H 0.14 0.88 8.06 -52.49 -0.42 0.45 16 42 H 0.13 0.96 6.42 -52.49 -0.34 0.62 16 LS Contribution 365.28 15.07 5.50 5.50 Total: -1.00 -30.63 365.28 -8.66 -39.29 By element: Atomic # 1 Polarization: 22.17 SS G_CDS: -5.01 Total: 17.16 kcal Atomic # 6 Polarization: 10.02 SS G_CDS: -2.82 Total: 7.21 kcal Atomic # 7 Polarization: -57.28 SS G_CDS: 0.04 Total: -57.24 kcal Atomic # 8 Polarization: -25.39 SS G_CDS: 0.15 Total: -25.24 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.08 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.63 -8.66 -39.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358280972.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.805 kcal (2) G-P(sol) polarization free energy of solvation -30.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.093 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds