Wall clock time and date at job start Tue Mar 31 2020 22:51:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.47122 * 2 1 4 4 N 1.46507 * 109.46764 * 119.99607 * 2 1 3 5 5 C 1.34766 * 120.00115 * 301.12461 * 4 2 1 6 6 O 1.21584 * 120.00391 * 0.02562 * 5 4 2 7 7 N 1.34780 * 119.99923 * 180.02562 * 5 4 2 8 8 C 1.46504 * 120.00034 * 179.97438 * 7 5 4 9 9 C 1.50694 * 109.47194 * 180.02562 * 8 7 5 10 10 O 1.21296 * 119.99880 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00272 * 180.02562 * 9 8 7 12 12 C 1.37100 * 120.00632 * 180.02562 * 11 9 8 13 13 H 1.08004 * 119.99344 * 359.97438 * 12 11 9 14 14 C 1.38943 * 120.00616 * 180.02562 * 12 11 9 15 15 N 1.31419 * 119.99837 * 359.97438 * 14 12 11 16 16 Si 1.86796 * 120.00228 * 179.97438 * 14 12 11 17 17 H 1.48500 * 109.46996 * 60.00057 * 16 14 12 18 18 H 1.48501 * 109.47054 * 179.97438 * 16 14 12 19 19 H 1.48491 * 109.47145 * 299.99682 * 16 14 12 20 20 C 1.50695 * 109.47246 * 239.99605 * 2 1 3 21 21 C 1.38240 * 119.98525 * 84.47930 * 20 2 1 22 22 C 1.38216 * 120.01291 * 179.72846 * 21 20 2 23 23 C 1.38354 * 119.98392 * 0.54298 * 22 21 20 24 24 Cl 1.73602 * 120.01314 * 179.70195 * 23 22 21 25 25 C 1.38352 * 119.97680 * 359.73496 * 23 22 21 26 26 C 1.38212 * 119.98387 * 359.97438 * 25 23 22 27 27 H 1.09003 * 109.47256 * 300.00113 * 1 2 3 28 28 H 1.09001 * 109.47221 * 60.00140 * 1 2 3 29 29 H 1.08997 * 109.47152 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.46917 * 180.02562 * 3 2 1 31 31 H 1.09001 * 109.46678 * 299.99549 * 3 2 1 32 32 H 1.09003 * 109.47147 * 59.99820 * 3 2 1 33 33 H 0.97005 * 119.99564 * 121.40875 * 4 2 1 34 34 H 0.96993 * 120.00197 * 0.02562 * 7 5 4 35 35 H 1.08994 * 109.47399 * 300.00874 * 8 7 5 36 36 H 1.09004 * 109.46775 * 60.00322 * 8 7 5 37 37 H 0.96999 * 120.00159 * 359.97438 * 11 9 8 38 38 H 0.97003 * 120.00001 * 179.97438 * 15 14 12 39 39 H 1.07996 * 119.99663 * 359.97438 * 21 20 2 40 40 H 1.08002 * 120.01123 * 180.27333 * 22 21 20 41 41 H 1.08000 * 120.00652 * 179.97438 * 25 23 22 42 42 H 1.08001 * 119.99225 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1963 5 6 1.6741 -0.2434 2.4201 6 8 0.9579 0.7328 2.5316 7 7 2.1237 -0.8785 3.5207 8 6 1.7500 -0.3921 4.8511 9 6 2.3789 -1.2702 5.9019 10 8 3.0716 -2.2097 5.5720 11 7 2.1717 -1.0118 7.2083 12 6 2.7443 -1.8103 8.1644 13 1 3.3611 -2.6468 7.8706 14 6 2.5303 -1.5442 9.5112 15 7 1.7794 -0.5266 9.8687 16 14 3.3099 -2.6327 10.8138 17 1 4.7875 -2.5947 10.6710 18 1 2.9305 -2.1400 12.1624 19 1 2.8318 -4.0282 10.6436 20 6 2.0324 -0.7105 -1.2304 21 6 2.1541 -0.0233 -2.4237 22 6 2.6201 -0.6729 -3.5511 23 6 2.9541 -2.0140 -3.4880 24 17 3.5322 -2.8327 -4.9055 25 6 2.8266 -2.7027 -2.2948 26 6 2.3662 -2.0505 -1.1666 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 3.1301 1.4425 -0.0005 31 1 1.6767 1.9562 -0.8901 32 1 1.6767 1.9564 0.8900 33 1 2.5927 -1.4672 1.1074 34 1 2.6953 -1.6570 3.4319 35 1 2.1018 0.6320 4.9757 36 1 0.6654 -0.4189 4.9563 37 1 1.6181 -0.2603 7.4722 38 1 1.6296 -0.3411 10.8090 39 1 1.8888 1.0224 -2.4741 40 1 2.7193 -0.1349 -4.4823 41 1 3.0869 -3.7497 -2.2450 42 1 2.2663 -2.5880 -0.2352 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358280972.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:57 Heat of formation + Delta-G solvation = -67.263836 kcal Electronic energy + Delta-G solvation = -26071.467451 eV Core-core repulsion = 22076.516957 eV Total energy + Delta-G solvation = -3994.950494 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.74437 -40.55408 -39.88333 -37.82938 -36.81113 -36.15193 -35.22576 -33.41848 -33.08478 -31.95818 -30.48055 -28.94441 -28.21157 -26.39337 -24.55669 -23.66381 -22.16742 -21.36442 -20.74636 -20.04896 -19.79095 -18.32143 -17.39530 -17.35848 -16.80171 -16.56191 -16.30099 -16.08563 -15.77015 -15.67774 -15.49311 -15.14834 -14.81344 -14.72939 -14.43945 -14.16895 -13.90662 -13.68928 -13.53947 -13.47707 -13.10988 -12.91637 -12.80181 -12.49421 -12.45817 -12.40726 -12.17277 -12.13321 -12.02404 -11.71374 -11.54953 -10.99001 -10.53618 -10.37597 -10.09260 -10.03670 -9.88785 -9.55374 -8.49664 -5.99816 0.06986 0.29335 1.14999 1.38987 1.43063 1.53073 1.61986 1.92004 2.17071 2.29434 2.59652 3.04955 3.17619 3.30934 3.44873 3.75676 3.91773 4.05307 4.17095 4.23537 4.32518 4.44071 4.46121 4.50155 4.62534 4.73412 4.77755 4.84248 4.94125 5.00645 5.14365 5.23701 5.25578 5.32956 5.38662 5.42268 5.49264 5.67428 5.75669 5.93347 5.97916 6.49717 7.04832 7.05304 7.44882 7.58971 7.96431 8.66889 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021941 B = 0.001902 C = 0.001776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.815230 B =14721.495125 C =15760.284985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.234 3.766 3 C -0.161 4.161 4 N -0.731 5.731 5 C 0.709 3.291 6 O -0.614 6.614 7 N -0.727 5.727 8 C 0.144 3.856 9 C 0.433 3.567 10 O -0.625 6.625 11 N -0.560 5.560 12 C -0.337 4.337 13 H 0.086 0.914 14 C -0.011 4.011 15 N -0.916 5.916 16 Si 0.997 3.003 17 H -0.270 1.270 18 H -0.272 1.272 19 H -0.270 1.270 20 C -0.081 4.081 21 C -0.094 4.094 22 C -0.107 4.107 23 C -0.047 4.047 24 Cl -0.074 7.074 25 C -0.110 4.110 26 C -0.111 4.111 27 H 0.063 0.937 28 H 0.083 0.917 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.090 0.910 32 H 0.059 0.941 33 H 0.405 0.595 34 H 0.408 0.592 35 H 0.091 0.909 36 H 0.092 0.908 37 H 0.399 0.601 38 H 0.280 0.720 39 H 0.156 0.844 40 H 0.152 0.848 41 H 0.145 0.855 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.271 1.070 -27.328 27.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.148 3.852 3 C -0.219 4.219 4 N -0.389 5.389 5 C 0.409 3.591 6 O -0.495 6.495 7 N -0.384 5.384 8 C 0.015 3.985 9 C 0.220 3.780 10 O -0.513 6.513 11 N -0.195 5.195 12 C -0.466 4.466 13 H 0.104 0.896 14 C -0.212 4.212 15 N -0.556 5.556 16 Si 0.820 3.180 17 H -0.195 1.195 18 H -0.197 1.197 19 H -0.195 1.195 20 C -0.082 4.082 21 C -0.112 4.112 22 C -0.126 4.126 23 C -0.073 4.073 24 Cl -0.045 7.045 25 C -0.128 4.128 26 C -0.129 4.129 27 H 0.082 0.918 28 H 0.102 0.898 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.109 0.891 32 H 0.078 0.922 33 H 0.242 0.758 34 H 0.245 0.755 35 H 0.109 0.891 36 H 0.110 0.890 37 H 0.233 0.767 38 H 0.089 0.911 39 H 0.174 0.826 40 H 0.170 0.830 41 H 0.163 0.837 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.478 1.341 -27.352 27.389 hybrid contribution 0.600 -0.944 0.922 1.450 sum 0.122 0.397 -26.430 26.433 Atomic orbital electron populations 1.22212 0.93191 1.02394 1.03631 1.18953 0.94168 0.91705 0.80325 1.22289 1.01167 0.94632 1.03778 1.45307 1.55436 1.34890 1.03259 1.15850 0.80188 0.82395 0.80687 1.90835 1.43121 1.29256 1.86313 1.44745 1.55379 1.34595 1.03717 1.20552 1.00283 0.97105 0.80522 1.20468 0.85703 0.87769 0.84049 1.90468 1.44979 1.34332 1.81510 1.41831 1.44766 1.28582 1.04333 1.19690 1.29362 1.11045 0.86545 0.89599 1.26124 0.97063 0.98280 0.99731 1.69678 1.37915 1.28769 1.19199 0.84931 0.78504 0.78010 0.76564 1.19531 1.19682 1.19510 1.19914 0.99353 0.94242 0.94672 1.21198 0.98133 1.01244 0.90656 1.21285 0.98666 0.92375 1.00233 1.21151 1.03319 0.94049 0.88790 1.98379 1.87380 1.79189 1.39588 1.21199 0.99532 1.01192 0.90910 1.21060 0.98951 0.94052 0.98863 0.91810 0.89849 0.92748 0.92465 0.89103 0.92200 0.75775 0.75481 0.89064 0.89016 0.76695 0.91099 0.82632 0.82983 0.83740 0.84364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.09 8.37 71.98 0.60 -2.49 16 2 C 0.23 4.38 0.89 2.85 0.00 4.38 16 3 C -0.16 -3.01 7.86 71.98 0.57 -2.45 16 4 N -0.73 -15.98 4.88 -441.45 -2.15 -18.13 16 5 C 0.71 21.00 7.98 179.06 1.43 22.43 16 6 O -0.61 -21.34 12.55 -3.98 -0.05 -21.39 16 7 N -0.73 -23.08 5.53 -482.31 -2.67 -25.75 16 8 C 0.14 5.15 6.15 85.63 0.53 5.68 16 9 C 0.43 19.70 7.85 87.66 0.69 20.39 16 10 O -0.62 -31.82 15.24 -3.08 -0.05 -31.86 16 11 N -0.56 -27.84 5.29 -306.99 -1.62 -29.46 16 12 C -0.34 -18.44 9.68 84.04 0.81 -17.63 16 13 H 0.09 4.93 7.16 -2.91 -0.02 4.91 16 14 C -0.01 -0.59 5.50 84.92 0.47 -0.12 16 15 N -0.92 -48.41 13.05 21.66 0.28 -48.13 16 16 Si 1.00 41.54 29.55 68.60 2.03 43.57 16 17 H -0.27 -11.09 7.11 99.48 0.71 -10.38 16 18 H -0.27 -10.77 7.11 99.48 0.71 -10.07 16 19 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 20 C -0.08 -1.22 4.80 -19.86 -0.10 -1.32 16 21 C -0.09 -1.14 9.15 22.26 0.20 -0.94 16 22 C -0.11 -1.29 9.83 22.29 0.22 -1.08 16 23 C -0.05 -0.66 6.32 22.32 0.14 -0.52 16 24 Cl -0.07 -1.05 28.96 -2.72 -0.08 -1.13 16 25 C -0.11 -1.55 9.83 22.29 0.22 -1.33 16 26 C -0.11 -1.62 9.02 22.27 0.20 -1.42 16 27 H 0.06 1.65 6.08 -2.39 -0.01 1.64 16 28 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 29 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.06 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.09 1.17 6.52 -2.39 -0.02 1.16 16 32 H 0.06 1.50 6.25 -2.39 -0.01 1.49 16 33 H 0.40 7.29 6.42 -92.70 -0.60 6.70 16 34 H 0.41 12.74 7.45 -92.71 -0.69 12.05 16 35 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 36 H 0.09 3.14 8.14 -2.38 -0.02 3.12 16 37 H 0.40 19.08 7.90 -92.71 -0.73 18.35 16 38 H 0.28 13.87 8.31 -92.71 -0.77 13.10 16 39 H 0.16 1.26 6.34 -2.91 -0.02 1.24 16 40 H 0.15 1.26 8.06 -2.91 -0.02 1.23 16 41 H 0.14 1.68 8.06 -2.91 -0.02 1.65 16 42 H 0.14 1.80 6.42 -2.91 -0.02 1.78 16 Total: -1.00 -65.41 365.28 0.76 -64.65 By element: Atomic # 1 Polarization: 44.96 SS G_CDS: -0.91 Total: 44.05 kcal Atomic # 6 Polarization: 17.60 SS G_CDS: 5.98 Total: 23.59 kcal Atomic # 7 Polarization: -115.31 SS G_CDS: -6.16 Total: -121.47 kcal Atomic # 8 Polarization: -53.15 SS G_CDS: -0.10 Total: -53.25 kcal Atomic # 14 Polarization: 41.54 SS G_CDS: 2.03 Total: 43.57 kcal Atomic # 17 Polarization: -1.05 SS G_CDS: -0.08 Total: -1.13 kcal Total: -65.41 0.76 -64.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358280972.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.618 kcal (2) G-P(sol) polarization free energy of solvation -65.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.024 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.646 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds