Wall clock time and date at job start Tue Mar 31 2020 22:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47298 * 2 1 4 4 H 1.09002 * 109.46916 * 305.00751 * 3 2 1 5 5 N 1.46500 * 109.46837 * 65.00184 * 3 2 1 6 6 C 1.34773 * 120.00431 * 275.00470 * 5 3 2 7 7 O 1.21593 * 119.99894 * 359.97438 * 6 5 3 8 8 N 1.34777 * 120.00097 * 179.72742 * 6 5 3 9 9 C 1.46504 * 119.99854 * 180.27545 * 8 6 5 10 10 C 1.50701 * 109.46923 * 179.97438 * 9 8 6 11 11 O 1.21297 * 119.99993 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99977 * 179.97438 * 10 9 8 13 13 C 1.37096 * 119.99931 * 180.02562 * 12 10 9 14 14 H 1.07998 * 120.00191 * 359.97438 * 13 12 10 15 15 C 1.38947 * 119.99788 * 180.02562 * 13 12 10 16 16 N 1.31415 * 120.00457 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99903 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46973 * 89.99963 * 17 15 13 19 19 H 1.48505 * 109.47151 * 209.99607 * 17 15 13 20 20 H 1.48500 * 109.47089 * 330.00141 * 17 15 13 21 21 C 1.50691 * 109.47321 * 185.00677 * 3 2 1 22 22 C 1.38242 * 119.98707 * 279.72885 * 21 3 2 23 23 C 1.38210 * 120.01479 * 179.72925 * 22 21 3 24 24 C 1.38355 * 119.98832 * 0.54246 * 23 22 21 25 25 Cl 1.73603 * 120.01503 * 179.70730 * 24 23 22 26 26 C 1.38348 * 119.96932 * 359.72904 * 24 23 22 27 27 C 1.38219 * 119.98751 * 359.97438 * 26 24 23 28 28 H 1.09005 * 109.46888 * 299.99223 * 1 2 3 29 29 H 1.08998 * 109.47562 * 59.99306 * 1 2 3 30 30 H 1.08999 * 109.47396 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46888 * 240.00777 * 2 1 3 32 32 H 1.08993 * 109.47875 * 120.00371 * 2 1 3 33 33 H 0.97000 * 119.99456 * 95.00032 * 5 3 2 34 34 H 0.97000 * 119.99736 * 0.26819 * 8 6 5 35 35 H 1.08998 * 109.46968 * 299.99782 * 9 8 6 36 36 H 1.08997 * 109.47198 * 59.99605 * 9 8 6 37 37 H 0.97003 * 119.99587 * 0.02562 * 12 10 9 38 38 H 0.96990 * 120.00229 * 180.02562 * 16 15 13 39 39 H 1.07999 * 119.99092 * 0.02562 * 22 21 3 40 40 H 1.08005 * 120.01093 * 180.27224 * 23 22 21 41 41 H 1.08007 * 120.00593 * 179.97438 * 26 24 23 42 42 H 1.08002 * 119.99168 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6525 2.0975 1.2518 6 6 0.4352 2.6643 1.3672 7 8 -0.3413 2.6326 0.4320 8 7 0.0767 3.2620 2.5207 9 6 -1.2488 3.8729 2.6481 10 6 -1.3978 4.4673 4.0249 11 8 -0.4862 4.3888 4.8212 12 7 -2.5435 5.0870 4.3710 13 6 -2.6788 5.6282 5.6233 14 1 -1.8675 5.5576 6.3326 15 6 -3.8601 6.2666 5.9803 16 7 -4.8476 6.3521 5.1174 17 14 -4.0448 7.0034 7.6869 18 1 -3.5789 8.4134 7.6703 19 1 -5.4723 6.9586 8.0936 20 1 -3.2299 6.2242 8.6533 21 6 3.5418 1.4444 -0.1240 22 6 4.3273 1.2086 0.9889 23 6 5.7047 1.2046 0.8747 24 6 6.2976 1.4477 -0.3514 25 17 8.0278 1.4504 -0.4941 26 6 5.5111 1.6891 -1.4637 27 6 4.1337 1.6868 -1.3495 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8898 33 1 2.2721 2.1231 1.9978 34 1 0.6963 3.2876 3.2666 35 1 -1.3609 4.6570 1.8993 36 1 -2.0152 3.1130 2.4959 37 1 -3.2723 5.1500 3.7339 38 1 -5.6721 6.7981 5.3665 39 1 3.8644 1.0228 1.9468 40 1 6.3182 1.0161 1.7434 41 1 5.9734 1.8794 -2.4211 42 1 3.5196 1.8749 -2.2178 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358286688.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:58 Heat of formation + Delta-G solvation = -55.928884 kcal Electronic energy + Delta-G solvation = -25914.536882 eV Core-core repulsion = 21920.077908 eV Total energy + Delta-G solvation = -3994.458974 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.57585 -39.48470 -38.25894 -37.02495 -35.85608 -34.39281 -33.69286 -32.24112 -31.47925 -31.36004 -31.08946 -27.67934 -26.02080 -24.40318 -23.39754 -22.49356 -21.25203 -20.38578 -19.58740 -18.60943 -18.06833 -17.47361 -16.59764 -15.87776 -15.79179 -15.51813 -15.31761 -14.74751 -14.59886 -14.43171 -14.23787 -13.98043 -13.89384 -13.87589 -13.42301 -13.27890 -12.81164 -12.65037 -12.18826 -11.97013 -11.95423 -11.76812 -11.63849 -11.49564 -11.24704 -11.18567 -11.13013 -10.90228 -10.46621 -10.32619 -10.00639 -9.64111 -9.47420 -9.18685 -8.96290 -8.63974 -8.63125 -8.10509 -6.51910 -3.93960 0.66774 0.85893 1.73585 2.74793 3.11181 3.19688 3.21806 3.27154 3.38295 3.74619 4.08150 4.20399 4.33406 4.40283 4.45766 4.84355 4.88619 4.89371 4.97717 5.03455 5.16801 5.20543 5.34123 5.45136 5.55889 5.72405 5.77678 5.79903 5.89738 5.93239 5.99689 6.03810 6.07471 6.11875 6.33902 6.44820 6.51306 6.75101 7.05014 7.45511 7.91894 8.20147 8.44641 8.77258 9.04213 9.39025 9.86870 10.64939 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018494 B = 0.001930 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.621560 B =14505.269544 C =15582.808640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C 0.205 3.795 4 H 0.100 0.900 5 N -0.744 5.744 6 C 0.706 3.294 7 O -0.590 6.590 8 N -0.725 5.725 9 C 0.129 3.871 10 C 0.428 3.572 11 O -0.598 6.598 12 N -0.549 5.549 13 C -0.305 4.305 14 H 0.105 0.895 15 C 0.025 3.975 16 N -0.894 5.894 17 Si 0.933 3.067 18 H -0.277 1.277 19 H -0.283 1.283 20 H -0.269 1.269 21 C -0.083 4.083 22 C -0.100 4.100 23 C -0.106 4.106 24 C -0.036 4.036 25 Cl -0.073 7.073 26 C -0.107 4.107 27 C -0.094 4.094 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.395 0.605 34 H 0.406 0.594 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.396 0.604 38 H 0.274 0.726 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.620 -12.110 -13.373 25.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.167 4.167 3 C 0.099 3.901 4 H 0.118 0.882 5 N -0.401 5.401 6 C 0.406 3.594 7 O -0.469 6.469 8 N -0.382 5.382 9 C 0.001 3.999 10 C 0.214 3.786 11 O -0.485 6.485 12 N -0.184 5.184 13 C -0.434 4.434 14 H 0.123 0.877 15 C -0.178 4.178 16 N -0.534 5.534 17 Si 0.760 3.240 18 H -0.203 1.203 19 H -0.208 1.208 20 H -0.193 1.193 21 C -0.084 4.084 22 C -0.118 4.118 23 C -0.124 4.124 24 C -0.063 4.063 25 Cl -0.044 7.044 26 C -0.126 4.126 27 C -0.113 4.113 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.230 0.770 34 H 0.243 0.757 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.230 0.770 38 H 0.084 0.916 39 H 0.150 0.850 40 H 0.153 0.847 41 H 0.153 0.847 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 18.411 -12.071 -13.670 25.914 hybrid contribution 0.163 0.493 1.161 1.272 sum 18.575 -11.577 -12.509 25.210 Atomic orbital electron populations 1.21796 0.94131 1.00474 1.03727 1.21967 0.97529 0.94970 1.02199 1.19693 0.88624 0.93936 0.87806 0.88187 1.45174 1.16386 1.61817 1.16706 1.15773 0.81953 0.78337 0.83305 1.90918 1.51781 1.65206 1.38999 1.44789 1.18189 1.60208 1.14999 1.20774 0.84074 0.98101 0.96944 1.19777 0.84730 0.85243 0.88879 1.90492 1.40853 1.64318 1.52842 1.41789 1.13630 1.48127 1.14844 1.19719 1.01193 1.32209 0.90295 0.87703 1.25328 0.95086 0.97422 0.99922 1.69612 1.05380 1.42989 1.35467 0.85814 0.77494 0.79291 0.81430 1.20274 1.20804 1.19338 1.20118 0.95411 0.98978 0.93872 1.20942 0.92710 0.99370 0.98819 1.21059 0.95003 1.00032 0.96355 1.20976 0.84655 1.04984 0.95658 1.98380 1.10722 1.97011 1.98283 1.21058 0.93394 1.00202 0.97937 1.20998 0.93922 0.98857 0.97507 0.91878 0.92010 0.93725 0.91217 0.91794 0.77029 0.75673 0.90021 0.90024 0.77017 0.91591 0.84960 0.84717 0.84738 0.84629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 8.51 37.16 0.32 -1.35 16 2 C -0.13 -1.18 5.59 -26.73 -0.15 -1.32 16 3 C 0.20 1.97 2.46 -69.08 -0.17 1.80 16 4 H 0.10 1.10 7.44 -51.93 -0.39 0.71 16 5 N -0.74 -8.22 4.98 -59.81 -0.30 -8.52 16 6 C 0.71 10.57 7.13 -86.92 -0.62 9.95 16 7 O -0.59 -10.35 13.48 5.28 0.07 -10.28 16 8 N -0.72 -11.63 5.53 -66.41 -0.37 -12.00 16 9 C 0.13 2.34 6.15 -5.19 -0.03 2.31 16 10 C 0.43 9.67 7.85 -10.99 -0.09 9.58 16 11 O -0.60 -15.08 15.24 5.54 0.08 -14.99 16 12 N -0.55 -13.48 5.29 -10.96 -0.06 -13.53 16 13 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 14 H 0.11 2.95 7.16 -52.49 -0.38 2.57 16 15 C 0.03 0.66 5.50 -17.47 -0.10 0.56 16 16 N -0.89 -23.74 13.05 55.50 0.72 -23.01 16 17 Si 0.93 20.43 29.55 -169.99 -5.02 15.40 16 18 H -0.28 -6.00 7.11 56.52 0.40 -5.60 16 19 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 20 H -0.27 -5.86 7.11 56.52 0.40 -5.46 16 21 C -0.08 -0.68 4.96 -104.63 -0.52 -1.20 16 22 C -0.10 -0.75 9.06 -39.59 -0.36 -1.11 16 23 C -0.11 -0.80 9.83 -39.55 -0.39 -1.19 16 24 C -0.04 -0.29 6.32 -39.50 -0.25 -0.54 16 25 Cl -0.07 -0.57 28.96 -51.86 -1.50 -2.07 16 26 C -0.11 -0.79 9.83 -39.55 -0.39 -1.18 16 27 C -0.09 -0.70 9.67 -39.59 -0.38 -1.08 16 28 H 0.06 0.89 5.65 -51.93 -0.29 0.59 16 29 H 0.06 0.77 7.84 -51.93 -0.41 0.36 16 30 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.39 3.61 6.87 -40.82 -0.28 3.33 16 34 H 0.41 6.40 7.45 -40.82 -0.30 6.09 16 35 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 36 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 37 H 0.40 9.35 7.90 -40.82 -0.32 9.03 16 38 H 0.27 6.88 8.31 -40.82 -0.34 6.54 16 39 H 0.13 0.82 6.90 -52.49 -0.36 0.46 16 40 H 0.13 0.83 8.06 -52.48 -0.42 0.41 16 41 H 0.13 0.77 8.06 -52.48 -0.42 0.35 16 42 H 0.14 0.80 8.04 -52.49 -0.42 0.37 16 LS Contribution 370.32 15.07 5.58 5.58 Total: -1.00 -30.86 370.32 -9.30 -40.16 By element: Atomic # 1 Polarization: 21.64 SS G_CDS: -5.25 Total: 16.39 kcal Atomic # 6 Polarization: 10.14 SS G_CDS: -3.27 Total: 6.87 kcal Atomic # 7 Polarization: -57.07 SS G_CDS: 0.00 Total: -57.06 kcal Atomic # 8 Polarization: -25.43 SS G_CDS: 0.16 Total: -25.27 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.40 kcal Atomic # 17 Polarization: -0.57 SS G_CDS: -1.50 Total: -2.07 kcal Total LS contribution 5.58 Total: 5.58 kcal Total: -30.86 -9.30 -40.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358286688.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.766 kcal (2) G-P(sol) polarization free energy of solvation -30.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds