Wall clock time and date at job start Tue Mar 31 2020 22:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53008 * 109.47298 * 2 1 4 4 H 1.09002 * 109.46916 * 305.00751 * 3 2 1 5 5 N 1.46500 * 109.46837 * 65.00184 * 3 2 1 6 6 C 1.34773 * 120.00431 * 275.00470 * 5 3 2 7 7 O 1.21593 * 119.99894 * 359.97438 * 6 5 3 8 8 N 1.34777 * 120.00097 * 179.72742 * 6 5 3 9 9 C 1.46504 * 119.99854 * 180.27545 * 8 6 5 10 10 C 1.50701 * 109.46923 * 179.97438 * 9 8 6 11 11 O 1.21297 * 119.99993 * 0.02562 * 10 9 8 12 12 N 1.34776 * 119.99977 * 179.97438 * 10 9 8 13 13 C 1.37096 * 119.99931 * 180.02562 * 12 10 9 14 14 H 1.07998 * 120.00191 * 359.97438 * 13 12 10 15 15 C 1.38947 * 119.99788 * 180.02562 * 13 12 10 16 16 N 1.31415 * 120.00457 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99903 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46973 * 89.99963 * 17 15 13 19 19 H 1.48505 * 109.47151 * 209.99607 * 17 15 13 20 20 H 1.48500 * 109.47089 * 330.00141 * 17 15 13 21 21 C 1.50691 * 109.47321 * 185.00677 * 3 2 1 22 22 C 1.38242 * 119.98707 * 279.72885 * 21 3 2 23 23 C 1.38210 * 120.01479 * 179.72925 * 22 21 3 24 24 C 1.38355 * 119.98832 * 0.54246 * 23 22 21 25 25 Cl 1.73603 * 120.01503 * 179.70730 * 24 23 22 26 26 C 1.38348 * 119.96932 * 359.72904 * 24 23 22 27 27 C 1.38219 * 119.98751 * 359.97438 * 26 24 23 28 28 H 1.09005 * 109.46888 * 299.99223 * 1 2 3 29 29 H 1.08998 * 109.47562 * 59.99306 * 1 2 3 30 30 H 1.08999 * 109.47396 * 180.02562 * 1 2 3 31 31 H 1.09005 * 109.46888 * 240.00777 * 2 1 3 32 32 H 1.08993 * 109.47875 * 120.00371 * 2 1 3 33 33 H 0.97000 * 119.99456 * 95.00032 * 5 3 2 34 34 H 0.97000 * 119.99736 * 0.26819 * 8 6 5 35 35 H 1.08998 * 109.46968 * 299.99782 * 9 8 6 36 36 H 1.08997 * 109.47198 * 59.99605 * 9 8 6 37 37 H 0.97003 * 119.99587 * 0.02562 * 12 10 9 38 38 H 0.96990 * 120.00229 * 180.02562 * 16 15 13 39 39 H 1.07999 * 119.99092 * 0.02562 * 22 21 3 40 40 H 1.08005 * 120.01093 * 180.27224 * 23 22 21 41 41 H 1.08007 * 120.00593 * 179.97438 * 26 24 23 42 42 H 1.08002 * 119.99168 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6053 1.9816 -0.8418 5 7 1.6525 2.0975 1.2518 6 6 0.4352 2.6643 1.3672 7 8 -0.3413 2.6326 0.4320 8 7 0.0767 3.2620 2.5207 9 6 -1.2488 3.8729 2.6481 10 6 -1.3978 4.4673 4.0249 11 8 -0.4862 4.3888 4.8212 12 7 -2.5435 5.0870 4.3710 13 6 -2.6788 5.6282 5.6233 14 1 -1.8675 5.5576 6.3326 15 6 -3.8601 6.2666 5.9803 16 7 -4.8476 6.3521 5.1174 17 14 -4.0448 7.0034 7.6869 18 1 -3.5789 8.4134 7.6703 19 1 -5.4723 6.9586 8.0936 20 1 -3.2299 6.2242 8.6533 21 6 3.5418 1.4444 -0.1240 22 6 4.3273 1.2086 0.9889 23 6 5.7047 1.2046 0.8747 24 6 6.2976 1.4477 -0.3514 25 17 8.0278 1.4504 -0.4941 26 6 5.5111 1.6891 -1.4637 27 6 4.1337 1.6868 -1.3495 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5137 -0.8901 32 1 1.8934 -0.5138 0.8898 33 1 2.2721 2.1231 1.9978 34 1 0.6963 3.2876 3.2666 35 1 -1.3609 4.6570 1.8993 36 1 -2.0152 3.1130 2.4959 37 1 -3.2723 5.1500 3.7339 38 1 -5.6721 6.7981 5.3665 39 1 3.8644 1.0228 1.9468 40 1 6.3182 1.0161 1.7434 41 1 5.9734 1.8794 -2.4211 42 1 3.5196 1.8749 -2.2178 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358286688.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:57:57 Heat of formation + Delta-G solvation = -76.254198 kcal Electronic energy + Delta-G solvation = -25915.418254 eV Core-core repulsion = 21920.077908 eV Total energy + Delta-G solvation = -3995.340346 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.55110 -40.48688 -39.88110 -37.72117 -36.74064 -36.14732 -35.21562 -33.42836 -33.12847 -32.05193 -31.79373 -29.15631 -27.06165 -26.11652 -23.99952 -23.21360 -22.25329 -21.39814 -21.24780 -20.10812 -19.65774 -18.28395 -17.54756 -17.32442 -17.01850 -16.65930 -16.27883 -16.22538 -15.88938 -15.80982 -15.39092 -15.18955 -14.73714 -14.66287 -14.45464 -14.31784 -13.91383 -13.69581 -13.53253 -13.41252 -13.32750 -12.89651 -12.61822 -12.48857 -12.44474 -12.26516 -12.12237 -11.96308 -11.83179 -11.71881 -11.55690 -11.25667 -10.53457 -10.28172 -10.08813 -10.02954 -9.85221 -9.57858 -8.49813 -5.99836 0.06015 0.30331 1.14954 1.37262 1.43194 1.55003 1.64921 1.91941 2.18973 2.29433 2.60626 3.07432 3.17538 3.35850 3.50167 3.78208 3.93114 4.13257 4.18112 4.23668 4.34401 4.39088 4.45873 4.50084 4.52924 4.69030 4.71893 4.94529 4.98628 5.08284 5.14885 5.22394 5.24259 5.33883 5.38164 5.40161 5.54875 5.64769 5.77190 5.93073 5.98511 6.49733 7.04985 7.05741 7.45031 7.59647 7.96442 8.67031 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018494 B = 0.001930 C = 0.001796 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1513.621560 B =14505.269544 C =15582.808640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.122 4.122 3 C 0.208 3.792 4 H 0.087 0.913 5 N -0.729 5.729 6 C 0.707 3.293 7 O -0.616 6.616 8 N -0.727 5.727 9 C 0.144 3.856 10 C 0.433 3.567 11 O -0.624 6.624 12 N -0.560 5.560 13 C -0.336 4.336 14 H 0.086 0.914 15 C -0.012 4.012 16 N -0.916 5.916 17 Si 0.997 3.003 18 H -0.271 1.271 19 H -0.272 1.272 20 H -0.270 1.270 21 C -0.089 4.089 22 C -0.102 4.102 23 C -0.111 4.111 24 C -0.046 4.046 25 Cl -0.075 7.075 26 C -0.111 4.111 27 C -0.096 4.096 28 H 0.035 0.965 29 H 0.047 0.953 30 H 0.054 0.946 31 H 0.088 0.912 32 H 0.072 0.928 33 H 0.406 0.594 34 H 0.408 0.592 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.399 0.601 38 H 0.279 0.721 39 H 0.145 0.855 40 H 0.147 0.853 41 H 0.149 0.851 42 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.535 -12.597 -13.587 26.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.160 4.160 3 C 0.103 3.897 4 H 0.105 0.895 5 N -0.386 5.386 6 C 0.407 3.593 7 O -0.497 6.497 8 N -0.384 5.384 9 C 0.016 3.984 10 C 0.221 3.779 11 O -0.512 6.512 12 N -0.196 5.196 13 C -0.465 4.465 14 H 0.104 0.896 15 C -0.212 4.212 16 N -0.556 5.556 17 Si 0.820 3.180 18 H -0.196 1.196 19 H -0.197 1.197 20 H -0.195 1.195 21 C -0.090 4.090 22 C -0.120 4.120 23 C -0.130 4.130 24 C -0.072 4.072 25 Cl -0.046 7.046 26 C -0.129 4.129 27 C -0.114 4.114 28 H 0.055 0.945 29 H 0.066 0.934 30 H 0.073 0.927 31 H 0.107 0.893 32 H 0.091 0.909 33 H 0.243 0.757 34 H 0.246 0.754 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.233 0.767 38 H 0.089 0.911 39 H 0.162 0.838 40 H 0.164 0.836 41 H 0.167 0.833 42 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 19.362 -12.579 -13.904 26.953 hybrid contribution -0.047 0.594 1.160 1.304 sum 19.315 -11.985 -12.744 26.060 Atomic orbital electron populations 1.21726 0.95911 1.00490 1.01642 1.21931 0.95712 0.94848 1.03545 1.19714 0.89688 0.93844 0.86448 0.89477 1.45101 1.15112 1.60662 1.17702 1.15830 0.82765 0.78217 0.82454 1.90905 1.52896 1.66189 1.39696 1.44715 1.17475 1.60636 1.15611 1.20546 0.85585 0.98451 0.93860 1.20469 0.83566 0.83780 0.90134 1.90468 1.41568 1.64919 1.54277 1.41840 1.14409 1.48868 1.14451 1.19722 1.01449 1.34110 0.91234 0.89591 1.26126 0.94391 0.97244 1.03481 1.69678 1.05726 1.43243 1.36953 0.84874 0.77756 0.78475 0.76913 1.19607 1.19709 1.19452 1.19996 0.94280 1.00129 0.94573 1.21085 0.92755 0.99010 0.99160 1.21234 0.95177 0.99857 0.96720 1.21160 0.84703 1.05204 0.96151 1.98379 1.10898 1.97025 1.98296 1.21250 0.93365 0.99825 0.98475 1.21182 0.94175 0.98315 0.97774 0.94542 0.93412 0.92665 0.89336 0.90908 0.75734 0.75438 0.89128 0.89084 0.76707 0.91110 0.83755 0.83568 0.83330 0.83265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.14 8.51 71.98 0.61 -2.52 16 2 C -0.12 -2.02 5.59 30.60 0.17 -1.85 16 3 C 0.21 3.70 2.46 44.24 0.11 3.81 16 4 H 0.09 1.83 7.44 -2.39 -0.02 1.81 16 5 N -0.73 -15.22 4.98 -461.41 -2.30 -17.52 16 6 C 0.71 20.67 7.13 179.06 1.28 21.95 16 7 O -0.62 -21.39 13.48 -4.01 -0.05 -21.44 16 8 N -0.73 -22.91 5.53 -482.29 -2.67 -25.58 16 9 C 0.14 5.16 6.15 85.63 0.53 5.69 16 10 C 0.43 19.70 7.85 87.66 0.69 20.39 16 11 O -0.62 -31.73 15.24 -3.08 -0.05 -31.77 16 12 N -0.56 -27.87 5.29 -306.98 -1.62 -29.49 16 13 C -0.34 -18.37 9.68 84.04 0.81 -17.56 16 14 H 0.09 4.94 7.16 -2.91 -0.02 4.92 16 15 C -0.01 -0.61 5.50 84.93 0.47 -0.15 16 16 N -0.92 -48.45 13.05 21.66 0.28 -48.17 16 17 Si 1.00 41.56 29.55 68.60 2.03 43.59 16 18 H -0.27 -10.97 7.11 99.48 0.71 -10.27 16 19 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 20 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 21 C -0.09 -1.29 4.96 -19.87 -0.10 -1.39 16 22 C -0.10 -1.33 9.06 22.26 0.20 -1.13 16 23 C -0.11 -1.48 9.83 22.29 0.22 -1.26 16 24 C -0.05 -0.65 6.32 22.32 0.14 -0.51 16 25 Cl -0.07 -1.08 28.96 -2.72 -0.08 -1.16 16 26 C -0.11 -1.42 9.83 22.29 0.22 -1.20 16 27 C -0.10 -1.24 9.67 22.26 0.22 -1.03 16 28 H 0.04 1.00 5.65 -2.38 -0.01 0.99 16 29 H 0.05 1.18 7.84 -2.39 -0.02 1.16 16 30 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 31 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.41 6.78 6.87 -92.71 -0.64 6.14 16 34 H 0.41 12.63 7.45 -92.71 -0.69 11.93 16 35 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 36 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 37 H 0.40 19.09 7.90 -92.71 -0.73 18.36 16 38 H 0.28 13.84 8.31 -92.72 -0.77 13.07 16 39 H 0.14 1.46 6.90 -2.91 -0.02 1.44 16 40 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 41 H 0.15 1.42 8.06 -2.91 -0.02 1.40 16 42 H 0.15 1.46 8.04 -2.91 -0.02 1.44 16 Total: -1.00 -65.66 370.32 0.14 -65.52 By element: Atomic # 1 Polarization: 43.76 SS G_CDS: -0.97 Total: 42.79 kcal Atomic # 6 Polarization: 17.67 SS G_CDS: 5.56 Total: 23.23 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -6.31 Total: -120.76 kcal Atomic # 8 Polarization: -53.12 SS G_CDS: -0.10 Total: -53.22 kcal Atomic # 14 Polarization: 41.56 SS G_CDS: 2.03 Total: 43.59 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.08 Total: -1.16 kcal Total: -65.66 0.14 -65.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358286688.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.732 kcal (2) G-P(sol) polarization free energy of solvation -65.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.522 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds