Wall clock time and date at job start Tue Mar 31 2020 22:52:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47068 * 2 1 4 4 N 1.46494 * 109.47082 * 239.99701 * 2 1 3 5 5 C 1.34778 * 120.00335 * 58.87481 * 4 2 1 6 6 O 1.21586 * 119.99298 * 0.02562 * 5 4 2 7 7 N 1.34768 * 120.00432 * 179.97438 * 5 4 2 8 8 C 1.46500 * 120.00221 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47248 * 180.02562 * 8 7 5 10 10 O 1.21301 * 120.00110 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00330 * 180.02562 * 9 8 7 12 12 C 1.37097 * 120.00283 * 180.02562 * 11 9 8 13 13 H 1.07997 * 119.99725 * 359.97438 * 12 11 9 14 14 C 1.38952 * 119.99938 * 179.97438 * 12 11 9 15 15 N 1.31409 * 119.99990 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99955 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47126 * 90.00022 * 16 14 12 18 18 H 1.48501 * 109.47350 * 209.99967 * 16 14 12 19 19 H 1.48501 * 109.46996 * 329.99715 * 16 14 12 20 20 C 1.50706 * 109.46924 * 119.99632 * 2 1 3 21 21 C 1.38258 * 119.99366 * 95.18978 * 20 2 1 22 22 C 1.38215 * 120.03164 * 179.97438 * 21 20 2 23 23 C 1.38238 * 120.00886 * 0.04219 * 22 21 20 24 24 C 1.38330 * 119.99043 * 359.97438 * 23 22 21 25 25 Cl 1.73592 * 120.01732 * 180.02562 * 24 23 22 26 26 C 1.38196 * 119.99374 * 275.21250 * 20 2 1 27 27 H 1.09000 * 109.47020 * 300.00655 * 1 2 3 28 28 H 1.08994 * 109.46781 * 59.99773 * 1 2 3 29 29 H 1.08994 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47096 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47171 * 299.99335 * 3 2 1 32 32 H 1.09000 * 109.47735 * 59.99783 * 3 2 1 33 33 H 0.97009 * 119.99841 * 238.87362 * 4 2 1 34 34 H 0.97009 * 119.99744 * 359.97438 * 7 5 4 35 35 H 1.08994 * 109.46717 * 299.99678 * 8 7 5 36 36 H 1.08996 * 109.47208 * 60.00193 * 8 7 5 37 37 H 0.97001 * 119.99925 * 359.97438 * 11 9 8 38 38 H 0.96998 * 120.00213 * 179.97438 * 15 14 12 39 39 H 1.08009 * 119.98325 * 0.02562 * 21 20 2 40 40 H 1.08000 * 119.99977 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.00338 * 179.97438 * 23 22 21 42 42 H 1.08000 * 120.00308 * 0.28056 * 26 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 1.6742 -0.2437 -2.4201 6 8 0.9588 0.7331 -2.5315 7 7 2.1238 -0.8787 -3.5205 8 6 1.7501 -0.3925 -4.8510 9 6 2.3781 -1.2715 -5.9017 10 8 3.0702 -2.2114 -5.5717 11 7 2.1716 -1.0127 -7.2081 12 6 2.7425 -1.8127 -8.1640 13 1 3.3580 -2.6500 -7.8701 14 6 2.5292 -1.5462 -9.5110 15 7 1.7798 -0.5276 -9.8685 16 14 3.3076 -2.6357 -10.8134 17 1 2.3835 -3.7506 -11.1430 18 1 3.5723 -1.8346 -12.0354 19 1 4.5857 -3.1882 -10.2972 20 6 2.0324 -0.7104 1.2306 21 6 2.3649 -2.0509 1.1675 22 6 2.8261 -2.7030 2.2954 23 6 2.9544 -2.0153 3.4877 24 6 2.6216 -0.6742 3.5517 25 17 2.7831 0.1903 5.0484 26 6 2.1601 -0.0218 2.4220 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 2.5895 -1.4697 -1.1071 34 1 2.6955 -1.6574 -3.4315 35 1 0.6656 -0.4194 -4.9562 36 1 2.1021 0.6315 -4.9757 37 1 1.6185 -0.2609 -7.4721 38 1 1.6311 -0.3413 -10.8088 39 1 2.2649 -2.5886 0.2361 40 1 3.0861 -3.7501 2.2455 41 1 3.3145 -2.5251 4.3691 42 1 1.8957 1.0241 2.4723 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358287701.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:52:00 Heat of formation + Delta-G solvation = -46.984577 kcal Electronic energy + Delta-G solvation = -26123.425566 eV Core-core repulsion = 22129.354447 eV Total energy + Delta-G solvation = -3994.071120 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.80755 -39.48432 -38.27594 -37.03399 -36.06338 -34.39850 -33.70116 -32.30221 -31.37932 -30.96770 -30.00285 -27.41032 -27.36151 -24.62832 -23.85170 -22.87950 -21.18175 -19.94731 -19.46063 -18.77234 -18.09898 -17.36910 -16.32675 -15.73960 -15.59771 -15.49823 -15.35666 -14.69762 -14.60202 -14.24798 -14.23191 -14.19252 -13.96894 -13.80312 -13.37995 -13.31071 -12.56365 -12.39766 -12.20468 -12.18454 -11.91426 -11.75026 -11.68770 -11.63902 -11.56220 -11.33943 -11.12838 -11.01150 -10.46822 -10.32584 -9.79599 -9.64374 -9.45290 -9.19009 -9.01353 -8.64230 -8.63543 -8.10809 -6.52192 -3.94229 0.72206 0.82519 1.71931 2.73692 3.10917 3.19140 3.21542 3.26821 3.37494 3.74368 4.07017 4.09385 4.33831 4.41199 4.61556 4.77752 4.82307 4.88952 4.94268 5.03703 5.16579 5.24642 5.35410 5.55783 5.56765 5.70559 5.76677 5.82816 5.88407 5.91112 5.97294 5.99598 6.07235 6.21509 6.27038 6.33581 6.56543 6.76016 7.05899 7.45229 7.91660 8.20722 8.44368 8.77624 9.03936 9.38783 9.86612 10.64657 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.029504 B = 0.001861 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.791523 B =15039.272628 C =15658.620075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.237 3.763 3 C -0.165 4.165 4 N -0.744 5.744 5 C 0.709 3.291 6 O -0.591 6.591 7 N -0.724 5.724 8 C 0.129 3.871 9 C 0.428 3.572 10 O -0.599 6.599 11 N -0.549 5.549 12 C -0.305 4.305 13 H 0.105 0.895 14 C 0.025 3.975 15 N -0.894 5.894 16 Si 0.933 3.067 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.269 1.269 20 C -0.067 4.067 21 C -0.113 4.113 22 C -0.100 4.100 23 C -0.114 4.114 24 C -0.031 4.031 25 Cl -0.071 7.071 26 C -0.100 4.100 27 H 0.062 0.938 28 H 0.091 0.909 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.395 0.605 34 H 0.406 0.594 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.396 0.604 38 H 0.274 0.726 39 H 0.131 0.869 40 H 0.135 0.865 41 H 0.133 0.867 42 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.312 0.471 26.032 26.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.150 3.850 3 C -0.223 4.223 4 N -0.402 5.402 5 C 0.409 3.591 6 O -0.470 6.470 7 N -0.381 5.381 8 C 0.001 3.999 9 C 0.214 3.786 10 O -0.485 6.485 11 N -0.184 5.184 12 C -0.434 4.434 13 H 0.123 0.877 14 C -0.177 4.177 15 N -0.534 5.534 16 Si 0.760 3.240 17 H -0.203 1.203 18 H -0.208 1.208 19 H -0.193 1.193 20 C -0.068 4.068 21 C -0.131 4.131 22 C -0.118 4.118 23 C -0.133 4.133 24 C -0.057 4.057 25 Cl -0.042 7.042 26 C -0.119 4.119 27 H 0.081 0.919 28 H 0.110 0.890 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.231 0.769 34 H 0.243 0.757 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.230 0.770 38 H 0.084 0.916 39 H 0.149 0.851 40 H 0.153 0.847 41 H 0.151 0.849 42 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -0.548 0.901 26.025 26.046 hybrid contribution 0.604 -0.768 -0.639 1.168 sum 0.057 0.133 25.385 25.385 Atomic orbital electron populations 1.22276 0.92869 1.02648 1.04042 1.18828 0.94358 0.91512 0.80300 1.22336 1.01282 0.94740 1.03907 1.45330 1.56234 1.34661 1.03972 1.15774 0.80450 0.82769 0.80118 1.90839 1.42118 1.28188 1.85863 1.44802 1.54945 1.34321 1.04079 1.20774 1.00255 0.97918 0.80963 1.19777 0.86883 0.88103 0.83871 1.90492 1.44017 1.33037 1.80994 1.41788 1.44360 1.28378 1.03848 1.19722 1.28147 1.10313 0.85267 0.87701 1.25326 0.96948 0.97130 0.98337 1.69612 1.37561 1.27828 1.18431 0.85813 0.79490 0.79289 0.79430 1.20280 1.20799 1.19339 1.19861 0.98502 0.94019 0.94391 1.21122 0.98831 0.94007 0.99183 1.21128 0.98535 1.00310 0.91859 1.21092 1.00631 0.92444 0.99111 1.20888 1.03894 0.93150 0.87809 1.98379 1.96395 1.76859 1.32569 1.20908 0.99681 1.00729 0.90609 0.91934 0.89011 0.92565 0.92417 0.89296 0.91776 0.76912 0.75689 0.89998 0.90001 0.77014 0.91586 0.85112 0.84737 0.84905 0.84367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.72 8.37 37.16 0.31 -1.41 16 2 C 0.24 2.45 0.89 -132.97 -0.12 2.33 16 3 C -0.16 -1.74 7.86 37.16 0.29 -1.45 16 4 N -0.74 -8.53 4.88 -53.50 -0.26 -8.79 16 5 C 0.71 10.72 7.98 -86.93 -0.69 10.02 16 6 O -0.59 -10.37 12.55 5.29 0.07 -10.30 16 7 N -0.72 -11.65 5.53 -66.42 -0.37 -12.02 16 8 C 0.13 2.33 6.15 -5.19 -0.03 2.30 16 9 C 0.43 9.65 7.85 -10.99 -0.09 9.56 16 10 O -0.60 -15.06 15.24 5.54 0.08 -14.97 16 11 N -0.55 -13.45 5.29 -10.96 -0.06 -13.51 16 12 C -0.31 -8.21 9.68 -14.93 -0.14 -8.36 16 13 H 0.11 2.94 7.16 -52.49 -0.38 2.57 16 14 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 15 N -0.89 -23.70 13.05 55.50 0.72 -22.98 16 16 Si 0.93 20.39 29.55 -169.99 -5.02 15.37 16 17 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 18 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 19 H -0.27 -5.86 7.11 56.52 0.40 -5.45 16 20 C -0.07 -0.59 4.80 -104.63 -0.50 -1.09 16 21 C -0.11 -0.89 9.02 -39.58 -0.36 -1.25 16 22 C -0.10 -0.69 10.05 -39.59 -0.40 -1.09 16 23 C -0.11 -0.83 9.83 -39.55 -0.39 -1.22 16 24 C -0.03 -0.25 6.32 -39.50 -0.25 -0.50 16 25 Cl -0.07 -0.56 28.96 -51.86 -1.50 -2.06 16 26 C -0.10 -0.85 8.93 -39.55 -0.35 -1.20 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.09 1.22 6.08 -51.93 -0.32 0.90 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.09 1.17 6.25 -51.93 -0.32 0.84 16 32 H 0.06 0.54 6.52 -51.93 -0.34 0.20 16 33 H 0.39 3.77 6.42 -40.82 -0.26 3.51 16 34 H 0.41 6.39 7.45 -40.82 -0.30 6.09 16 35 H 0.08 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 37 H 0.40 9.34 7.90 -40.82 -0.32 9.02 16 38 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 39 H 0.13 0.91 6.42 -52.48 -0.34 0.57 16 40 H 0.13 0.64 8.06 -52.49 -0.42 0.22 16 41 H 0.13 0.74 8.06 -52.49 -0.42 0.32 16 42 H 0.14 1.04 6.33 -52.49 -0.33 0.71 16 LS Contribution 365.26 15.07 5.50 5.50 Total: -1.00 -30.63 365.26 -8.66 -39.28 By element: Atomic # 1 Polarization: 22.27 SS G_CDS: -5.01 Total: 17.26 kcal Atomic # 6 Polarization: 10.03 SS G_CDS: -2.82 Total: 7.21 kcal Atomic # 7 Polarization: -57.33 SS G_CDS: 0.04 Total: -57.29 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: 0.15 Total: -25.27 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.37 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -30.63 -8.66 -39.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358287701.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.702 kcal (2) G-P(sol) polarization free energy of solvation -30.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.328 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.283 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds