Wall clock time and date at job start Tue Mar 31 2020 22:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47068 * 2 1 4 4 N 1.46494 * 109.47082 * 239.99701 * 2 1 3 5 5 C 1.34778 * 120.00335 * 58.87481 * 4 2 1 6 6 O 1.21586 * 119.99298 * 0.02562 * 5 4 2 7 7 N 1.34768 * 120.00432 * 179.97438 * 5 4 2 8 8 C 1.46500 * 120.00221 * 180.02562 * 7 5 4 9 9 C 1.50699 * 109.47248 * 180.02562 * 8 7 5 10 10 O 1.21301 * 120.00110 * 359.97438 * 9 8 7 11 11 N 1.34772 * 120.00330 * 180.02562 * 9 8 7 12 12 C 1.37097 * 120.00283 * 180.02562 * 11 9 8 13 13 H 1.07997 * 119.99725 * 359.97438 * 12 11 9 14 14 C 1.38952 * 119.99938 * 179.97438 * 12 11 9 15 15 N 1.31409 * 119.99990 * 359.97438 * 14 12 11 16 16 Si 1.86799 * 119.99955 * 179.97438 * 14 12 11 17 17 H 1.48503 * 109.47126 * 90.00022 * 16 14 12 18 18 H 1.48501 * 109.47350 * 209.99967 * 16 14 12 19 19 H 1.48501 * 109.46996 * 329.99715 * 16 14 12 20 20 C 1.50706 * 109.46924 * 119.99632 * 2 1 3 21 21 C 1.38258 * 119.99366 * 95.18978 * 20 2 1 22 22 C 1.38215 * 120.03164 * 179.97438 * 21 20 2 23 23 C 1.38238 * 120.00886 * 0.04219 * 22 21 20 24 24 C 1.38330 * 119.99043 * 359.97438 * 23 22 21 25 25 Cl 1.73592 * 120.01732 * 180.02562 * 24 23 22 26 26 C 1.38196 * 119.99374 * 275.21250 * 20 2 1 27 27 H 1.09000 * 109.47020 * 300.00655 * 1 2 3 28 28 H 1.08994 * 109.46781 * 59.99773 * 1 2 3 29 29 H 1.08994 * 109.47113 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47096 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.47171 * 299.99335 * 3 2 1 32 32 H 1.09000 * 109.47735 * 59.99783 * 3 2 1 33 33 H 0.97009 * 119.99841 * 238.87362 * 4 2 1 34 34 H 0.97009 * 119.99744 * 359.97438 * 7 5 4 35 35 H 1.08994 * 109.46717 * 299.99678 * 8 7 5 36 36 H 1.08996 * 109.47208 * 60.00193 * 8 7 5 37 37 H 0.97001 * 119.99925 * 359.97438 * 11 9 8 38 38 H 0.96998 * 120.00213 * 179.97438 * 15 14 12 39 39 H 1.08009 * 119.98325 * 0.02562 * 21 20 2 40 40 H 1.08000 * 119.99977 * 180.02562 * 22 21 20 41 41 H 1.08000 * 120.00338 * 179.97438 * 23 22 21 42 42 H 1.08000 * 120.00308 * 0.28056 * 26 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 1.6742 -0.2437 -2.4201 6 8 0.9588 0.7331 -2.5315 7 7 2.1238 -0.8787 -3.5205 8 6 1.7501 -0.3925 -4.8510 9 6 2.3781 -1.2715 -5.9017 10 8 3.0702 -2.2114 -5.5717 11 7 2.1716 -1.0127 -7.2081 12 6 2.7425 -1.8127 -8.1640 13 1 3.3580 -2.6500 -7.8701 14 6 2.5292 -1.5462 -9.5110 15 7 1.7798 -0.5276 -9.8685 16 14 3.3076 -2.6357 -10.8134 17 1 2.3835 -3.7506 -11.1430 18 1 3.5723 -1.8346 -12.0354 19 1 4.5857 -3.1882 -10.2972 20 6 2.0324 -0.7104 1.2306 21 6 2.3649 -2.0509 1.1675 22 6 2.8261 -2.7030 2.2954 23 6 2.9544 -2.0153 3.4877 24 6 2.6216 -0.6742 3.5517 25 17 2.7831 0.1903 5.0484 26 6 2.1601 -0.0218 2.4220 27 1 -0.3633 0.5139 0.8899 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 3.1300 1.4425 0.0005 31 1 1.6768 1.9563 -0.8901 32 1 1.6767 1.9564 0.8899 33 1 2.5895 -1.4697 -1.1071 34 1 2.6955 -1.6574 -3.4315 35 1 0.6656 -0.4194 -4.9562 36 1 2.1021 0.6315 -4.9757 37 1 1.6185 -0.2609 -7.4721 38 1 1.6311 -0.3413 -10.8088 39 1 2.2649 -2.5886 0.2361 40 1 3.0861 -3.7501 2.2455 41 1 3.3145 -2.5251 4.3691 42 1 1.8957 1.0241 2.4723 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358287701.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:51:59 Heat of formation + Delta-G solvation = -67.141091 kcal Electronic energy + Delta-G solvation = -26124.299618 eV Core-core repulsion = 22129.354447 eV Total energy + Delta-G solvation = -3994.945172 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.75664 -40.55748 -39.88386 -37.76944 -36.91273 -36.15948 -35.23037 -33.43443 -33.13669 -31.62894 -30.73716 -28.94209 -28.23724 -26.39598 -24.68736 -23.50271 -22.20662 -21.36576 -20.77879 -20.05068 -19.80293 -18.32728 -17.37066 -17.17693 -16.80350 -16.56765 -16.30309 -16.26676 -15.78501 -15.65167 -15.52692 -15.17656 -14.83653 -14.77010 -14.57660 -14.15018 -13.91121 -13.66770 -13.53371 -13.25524 -13.16359 -12.91955 -12.79970 -12.44829 -12.44371 -12.36873 -12.24403 -12.20497 -12.12084 -11.70079 -11.55590 -10.99944 -10.53442 -10.40910 -10.09519 -9.96652 -9.81205 -9.66126 -8.49770 -5.99794 0.11974 0.23955 1.11815 1.37369 1.43293 1.54785 1.62678 1.91923 2.16482 2.29423 2.60420 3.04699 3.17648 3.30319 3.38621 3.80773 4.02510 4.05991 4.16422 4.19221 4.24290 4.42130 4.46164 4.50157 4.61984 4.65882 4.75969 4.82284 4.91877 4.97076 5.18432 5.20630 5.28928 5.35423 5.38154 5.40166 5.47596 5.63942 5.76865 5.93486 5.97717 6.49739 7.04977 7.05269 7.44975 7.58498 7.96451 8.67078 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.029504 B = 0.001861 C = 0.001788 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 948.791523 B =15039.272628 C =15658.620075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.236 3.764 3 C -0.161 4.161 4 N -0.730 5.730 5 C 0.709 3.291 6 O -0.615 6.615 7 N -0.726 5.726 8 C 0.144 3.856 9 C 0.433 3.567 10 O -0.624 6.624 11 N -0.560 5.560 12 C -0.336 4.336 13 H 0.086 0.914 14 C -0.012 4.012 15 N -0.916 5.916 16 Si 0.997 3.003 17 H -0.270 1.270 18 H -0.272 1.272 19 H -0.270 1.270 20 C -0.074 4.074 21 C -0.119 4.119 22 C -0.098 4.098 23 C -0.114 4.114 24 C -0.041 4.041 25 Cl -0.072 7.072 26 C -0.105 4.105 27 H 0.079 0.921 28 H 0.064 0.936 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.084 0.916 33 H 0.406 0.594 34 H 0.408 0.592 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.399 0.601 38 H 0.279 0.721 39 H 0.138 0.862 40 H 0.159 0.841 41 H 0.150 0.850 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.057 -0.317 27.176 27.178 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.150 3.850 3 C -0.219 4.219 4 N -0.387 5.387 5 C 0.409 3.591 6 O -0.496 6.496 7 N -0.383 5.383 8 C 0.015 3.985 9 C 0.221 3.779 10 O -0.512 6.512 11 N -0.195 5.195 12 C -0.466 4.466 13 H 0.104 0.896 14 C -0.212 4.212 15 N -0.556 5.556 16 Si 0.820 3.180 17 H -0.196 1.196 18 H -0.197 1.197 19 H -0.195 1.195 20 C -0.075 4.075 21 C -0.138 4.138 22 C -0.116 4.116 23 C -0.133 4.133 24 C -0.067 4.067 25 Cl -0.043 7.043 26 C -0.124 4.124 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.103 0.897 33 H 0.244 0.756 34 H 0.246 0.754 35 H 0.110 0.890 36 H 0.109 0.891 37 H 0.233 0.767 38 H 0.089 0.911 39 H 0.156 0.844 40 H 0.176 0.824 41 H 0.168 0.832 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -0.179 0.113 27.210 27.211 hybrid contribution 0.488 -0.522 -0.867 1.124 sum 0.309 -0.409 26.343 26.348 Atomic orbital electron populations 1.22209 0.93174 1.02532 1.03504 1.18883 0.94166 0.91528 0.80394 1.22284 1.01167 0.94892 1.03571 1.45262 1.55629 1.34718 1.03135 1.15844 0.80178 0.82400 0.80686 1.90838 1.43178 1.29248 1.86311 1.44727 1.55351 1.34595 1.03666 1.20555 1.00307 0.97102 0.80522 1.20461 0.85686 0.87757 0.84037 1.90468 1.44968 1.34304 1.81505 1.41838 1.44850 1.28514 1.04344 1.19728 1.29399 1.10898 0.86534 0.89567 1.26124 0.97079 0.98271 0.99740 1.69678 1.38052 1.28719 1.19149 0.84871 0.78495 0.77727 0.76910 1.19583 1.19732 1.19458 1.19674 0.99737 0.94455 0.93661 1.21289 0.98733 0.93715 1.00017 1.21402 0.97594 1.01394 0.91193 1.21371 0.99824 0.92143 0.99929 1.21006 1.04306 0.93675 0.87758 1.98379 1.96412 1.76962 1.32514 1.20967 0.99788 1.01076 0.90588 0.90257 0.91693 0.92433 0.92470 0.91991 0.89720 0.75643 0.75419 0.89007 0.89091 0.76706 0.91109 0.84401 0.82389 0.83237 0.83872 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.24 8.37 71.98 0.60 -2.63 16 2 C 0.24 4.65 0.89 2.86 0.00 4.65 16 3 C -0.16 -3.30 7.86 71.98 0.57 -2.74 16 4 N -0.73 -16.06 4.88 -441.45 -2.15 -18.22 16 5 C 0.71 21.10 7.98 179.06 1.43 22.53 16 6 O -0.61 -21.57 12.55 -3.99 -0.05 -21.62 16 7 N -0.73 -22.97 5.53 -482.32 -2.67 -25.64 16 8 C 0.14 5.14 6.15 85.63 0.53 5.66 16 9 C 0.43 19.66 7.85 87.66 0.69 20.35 16 10 O -0.62 -31.65 15.24 -3.09 -0.05 -31.70 16 11 N -0.56 -27.81 5.29 -306.98 -1.62 -29.43 16 12 C -0.34 -18.36 9.68 84.04 0.81 -17.55 16 13 H 0.09 4.95 7.16 -2.91 -0.02 4.93 16 14 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 15 N -0.92 -48.40 13.05 21.66 0.28 -48.12 16 16 Si 1.00 41.48 29.55 68.60 2.03 43.51 16 17 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 18 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 19 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 20 C -0.07 -1.19 4.80 -19.87 -0.10 -1.29 16 21 C -0.12 -1.64 9.02 22.27 0.20 -1.43 16 22 C -0.10 -1.09 10.05 22.26 0.22 -0.87 16 23 C -0.11 -1.37 9.83 22.29 0.22 -1.16 16 24 C -0.04 -0.59 6.32 22.32 0.14 -0.45 16 25 Cl -0.07 -1.02 28.96 -2.72 -0.08 -1.10 16 26 C -0.11 -1.60 8.93 22.29 0.20 -1.40 16 27 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 28 H 0.06 1.73 6.08 -2.39 -0.01 1.71 16 29 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.06 1.63 6.25 -2.38 -0.01 1.62 16 32 H 0.08 1.34 6.52 -2.39 -0.02 1.32 16 33 H 0.41 7.20 6.42 -92.70 -0.59 6.60 16 34 H 0.41 12.63 7.45 -92.70 -0.69 11.94 16 35 H 0.09 3.14 8.14 -2.39 -0.02 3.12 16 36 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 37 H 0.40 19.07 7.90 -92.71 -0.73 18.33 16 38 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 39 H 0.14 1.63 6.42 -2.91 -0.02 1.61 16 40 H 0.16 0.98 8.06 -2.91 -0.02 0.96 16 41 H 0.15 1.25 8.06 -2.91 -0.02 1.23 16 42 H 0.14 1.93 6.33 -2.91 -0.02 1.91 16 Total: -1.00 -65.33 365.26 0.76 -64.57 By element: Atomic # 1 Polarization: 45.13 SS G_CDS: -0.91 Total: 44.21 kcal Atomic # 6 Polarization: 17.57 SS G_CDS: 5.98 Total: 23.55 kcal Atomic # 7 Polarization: -115.25 SS G_CDS: -6.16 Total: -121.42 kcal Atomic # 8 Polarization: -53.23 SS G_CDS: -0.10 Total: -53.32 kcal Atomic # 14 Polarization: 41.48 SS G_CDS: 2.03 Total: 43.51 kcal Atomic # 17 Polarization: -1.02 SS G_CDS: -0.08 Total: -1.10 kcal Total: -65.33 0.76 -64.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358287701.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.569 kcal (2) G-P(sol) polarization free energy of solvation -65.330 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.899 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds