Wall clock time and date at job start Tue Mar 31 2020 22:41:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38232 * 120.00794 * 2 1 4 4 C 1.38220 * 120.01498 * 179.97438 * 3 2 1 5 5 C 1.50699 * 119.99034 * 179.97438 * 4 3 2 6 6 C 1.52996 * 109.47070 * 90.00143 * 5 4 3 7 7 N 1.46500 * 109.47249 * 180.02562 * 6 5 4 8 8 C 1.34777 * 120.00108 * 180.02562 * 7 6 5 9 9 O 1.21581 * 119.99964 * 359.97438 * 8 7 6 10 10 N 1.34774 * 119.99889 * 179.97438 * 8 7 6 11 11 C 1.46496 * 119.99959 * 180.02562 * 10 8 7 12 12 C 1.50701 * 109.47231 * 180.02562 * 11 10 8 13 13 O 1.21293 * 119.99948 * 359.97438 * 12 11 10 14 14 N 1.34774 * 120.00321 * 180.02562 * 12 11 10 15 15 C 1.37088 * 120.00533 * 179.97438 * 14 12 11 16 16 H 1.08007 * 119.99978 * 359.97438 * 15 14 12 17 17 C 1.38952 * 120.00813 * 179.97438 * 15 14 12 18 18 N 1.31413 * 120.00485 * 180.02562 * 17 15 14 19 19 Si 1.86805 * 119.99464 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47098 * 89.99663 * 19 17 15 21 21 H 1.48500 * 109.47218 * 210.00249 * 19 17 15 22 22 H 1.48506 * 109.47057 * 329.99888 * 19 17 15 23 23 C 1.38264 * 120.02583 * 0.02562 * 4 3 2 24 24 C 1.38189 * 120.01199 * 359.97438 * 23 4 3 25 25 C 1.38335 * 120.00426 * 179.97438 * 2 1 3 26 26 Cl 1.73595 * 120.01468 * 359.74809 * 25 2 1 27 27 H 1.08997 * 109.47389 * 270.01704 * 1 2 3 28 28 H 1.09002 * 109.47291 * 30.02179 * 1 2 3 29 29 H 1.09002 * 109.47234 * 150.01696 * 1 2 3 30 30 H 1.08002 * 119.99411 * 359.95836 * 3 2 1 31 31 H 1.08994 * 109.46976 * 210.00487 * 5 4 3 32 32 H 1.09006 * 109.46534 * 330.00562 * 5 4 3 33 33 H 1.09001 * 109.47216 * 300.00284 * 6 5 4 34 34 H 1.08996 * 109.47213 * 60.00211 * 6 5 4 35 35 H 0.97007 * 119.99909 * 359.97438 * 7 6 5 36 36 H 0.97007 * 120.00127 * 359.97438 * 10 8 7 37 37 H 1.08999 * 109.47314 * 299.99446 * 11 10 8 38 38 H 1.09001 * 109.47352 * 60.00111 * 11 10 8 39 39 H 0.97006 * 119.99851 * 359.97438 * 14 12 11 40 40 H 0.97004 * 119.99588 * 180.02562 * 18 17 15 41 41 H 1.07997 * 119.99869 * 179.97438 * 23 4 3 42 42 H 1.08001 * 120.00973 * 180.02562 * 24 23 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1970 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3336 2.5025 0.0000 6 6 4.5879 2.9452 1.4422 7 7 5.3195 4.2144 1.4417 8 6 5.6562 4.7987 2.6086 9 8 5.3524 4.2726 3.6618 10 7 6.3297 5.9661 2.6081 11 6 6.6962 6.6009 3.8765 12 6 7.4360 7.8845 3.6006 13 8 7.6377 8.2344 2.4569 14 7 7.8743 8.6432 4.6246 15 6 8.5477 9.8106 4.3737 16 1 8.7274 10.1222 3.3553 17 6 8.9993 10.5931 5.4294 18 7 9.6443 11.7125 5.1888 19 14 8.6893 10.0539 7.1909 20 1 9.8201 9.2118 7.6570 21 1 8.5716 11.2510 8.0616 22 1 7.4295 9.2701 7.2541 23 6 4.2725 0.0002 0.0005 24 6 3.5825 -1.1971 0.0005 25 6 2.1987 -1.1980 0.0005 26 17 1.3313 -2.7016 0.0078 27 1 -0.3634 0.0003 1.0276 28 1 -0.3634 0.8898 -0.5142 29 1 -0.3634 -0.8901 -0.5136 30 1 1.6583 2.1324 -0.0007 31 1 5.2862 2.3721 -0.5135 32 1 3.7444 3.2616 -0.5146 33 1 3.6353 3.0755 1.9556 34 1 5.1771 2.1861 1.9567 35 1 5.5623 4.6340 0.6014 36 1 6.5725 6.3856 1.7678 37 1 5.7939 6.8178 4.4483 38 1 7.3357 5.9282 4.4481 39 1 7.7134 8.3632 5.5393 40 1 9.9598 12.2585 5.9259 41 1 5.3525 0.0008 0.0005 42 1 4.1231 -2.1321 0.0010 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000361609032.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:25 Heat of formation + Delta-G solvation = -58.213257 kcal Electronic energy + Delta-G solvation = -24864.757706 eV Core-core repulsion = 20870.199675 eV Total energy + Delta-G solvation = -3994.558032 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.23583 -39.81099 -38.41569 -37.03834 -35.71282 -34.47991 -33.74821 -33.50084 -32.42350 -31.80030 -29.17868 -27.58545 -27.20926 -24.54483 -23.56685 -22.64452 -21.10354 -20.63400 -19.65663 -18.84136 -18.06806 -17.26771 -16.55642 -16.41033 -15.71011 -15.61717 -15.38823 -14.92922 -14.71755 -14.64052 -14.35829 -14.07824 -13.83341 -13.79995 -13.59478 -13.14142 -12.93646 -12.82799 -12.55995 -12.48480 -12.24678 -12.16852 -12.03034 -11.72068 -11.55635 -11.52388 -11.23776 -11.11823 -10.64585 -10.15853 -10.06566 -9.70429 -9.32130 -9.24934 -8.95134 -8.77549 -8.70828 -8.31066 -6.41515 -3.94114 0.65263 0.82320 1.72197 2.69640 2.99441 3.04205 3.12177 3.13589 3.30805 3.57035 4.03004 4.14412 4.22503 4.31391 4.45206 4.62011 4.65972 4.68893 4.77960 4.92384 5.07099 5.13660 5.15763 5.17742 5.26401 5.40479 5.56194 5.63052 5.66944 5.72759 5.74852 5.80208 5.84957 5.89508 6.08955 6.33936 6.40539 6.62154 6.99104 7.44268 7.99504 8.14370 8.43653 8.70411 8.81016 9.29208 9.62880 10.70607 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.034591 B = 0.001467 C = 0.001451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 809.272995 B =19084.747189 C =19297.787375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.074 4.074 3 C -0.103 4.103 4 C -0.069 4.069 5 C -0.094 4.094 6 C 0.146 3.854 7 N -0.750 5.750 8 C 0.705 3.295 9 O -0.598 6.598 10 N -0.725 5.725 11 C 0.126 3.874 12 C 0.438 3.562 13 O -0.580 6.580 14 N -0.576 5.576 15 C -0.311 4.311 16 H 0.121 0.879 17 C 0.046 3.954 18 N -0.874 5.874 19 Si 0.879 3.121 20 H -0.269 1.269 21 H -0.275 1.275 22 H -0.267 1.267 23 C -0.107 4.107 24 C -0.104 4.104 25 C -0.041 4.041 26 Cl -0.071 7.071 27 H 0.077 0.923 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.133 0.867 31 H 0.084 0.916 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.398 0.602 36 H 0.408 0.592 37 H 0.083 0.917 38 H 0.083 0.917 39 H 0.375 0.625 40 H 0.276 0.724 41 H 0.133 0.867 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.000 -26.026 -11.068 32.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.074 4.074 3 C -0.121 4.121 4 C -0.070 4.070 5 C -0.132 4.132 6 C 0.022 3.978 7 N -0.407 5.407 8 C 0.405 3.595 9 O -0.477 6.477 10 N -0.382 5.382 11 C -0.003 4.003 12 C 0.224 3.776 13 O -0.464 6.464 14 N -0.214 5.214 15 C -0.439 4.439 16 H 0.139 0.861 17 C -0.159 4.159 18 N -0.513 5.513 19 Si 0.705 3.295 20 H -0.194 1.194 21 H -0.200 1.200 22 H -0.192 1.192 23 C -0.125 4.125 24 C -0.123 4.123 25 C -0.067 4.067 26 Cl -0.042 7.042 27 H 0.095 0.905 28 H 0.091 0.909 29 H 0.092 0.908 30 H 0.151 0.849 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.085 0.915 34 H 0.086 0.914 35 H 0.232 0.768 36 H 0.245 0.755 37 H 0.101 0.899 38 H 0.101 0.899 39 H 0.208 0.792 40 H 0.086 0.914 41 H 0.151 0.849 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -16.096 -26.179 -10.751 32.558 hybrid contribution 0.074 -0.010 0.729 0.733 sum -16.021 -26.190 -10.022 32.296 Atomic orbital electron populations 1.20890 0.90203 1.03520 1.03128 1.19776 0.96827 0.91345 0.99484 1.20945 0.93451 0.97343 1.00338 1.19751 0.93582 0.94763 0.98872 1.20823 1.00954 0.94324 0.97082 1.21085 0.96738 0.84606 0.95381 1.45026 1.62789 1.25426 1.07438 1.15822 0.78900 0.80749 0.84047 1.90910 1.60806 1.65707 1.30237 1.44750 1.60263 1.22823 1.10412 1.20802 1.00079 0.93703 0.85676 1.19660 0.85408 0.86426 0.86079 1.90532 1.61538 1.73339 1.21011 1.42113 1.50826 1.21663 1.06770 1.19439 1.31020 0.96123 0.97327 0.86095 1.25062 0.96622 0.95581 0.98594 1.69620 1.36341 1.12558 1.32811 0.86674 0.79060 0.79248 0.84536 1.19389 1.19985 1.19189 1.21042 1.00349 0.91085 1.00038 1.21042 0.91905 0.99254 1.00083 1.20836 0.92470 0.86706 1.06706 1.98361 1.76939 1.32043 1.96900 0.90485 0.90946 0.90823 0.84894 0.89773 0.89810 0.91459 0.91433 0.76846 0.75452 0.89893 0.89878 0.79219 0.91387 0.84868 0.84860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.69 9.61 36.00 0.35 -0.34 16 2 C -0.07 -0.54 5.88 -104.59 -0.62 -1.15 16 3 C -0.10 -0.71 9.36 -39.59 -0.37 -1.08 16 4 C -0.07 -0.47 5.13 -104.62 -0.54 -1.01 16 5 C -0.09 -0.56 5.46 -27.89 -0.15 -0.71 16 6 C 0.15 1.33 5.66 -4.04 -0.02 1.30 16 7 N -0.75 -7.94 5.56 -65.23 -0.36 -8.31 16 8 C 0.71 10.69 8.57 -86.92 -0.74 9.95 16 9 O -0.60 -11.16 16.34 5.29 0.09 -11.07 16 10 N -0.72 -11.36 5.53 -66.42 -0.37 -11.73 16 11 C 0.13 2.18 6.15 -5.20 -0.03 2.14 16 12 C 0.44 9.53 7.85 -10.99 -0.09 9.45 16 13 O -0.58 -14.43 15.24 5.55 0.08 -14.34 16 14 N -0.58 -13.29 5.09 -10.96 -0.06 -13.35 16 15 C -0.31 -8.51 10.16 -14.94 -0.15 -8.66 16 16 H 0.12 3.77 7.39 -52.48 -0.39 3.38 16 17 C 0.05 1.22 5.50 -17.47 -0.10 1.12 16 18 N -0.87 -24.83 13.96 55.50 0.77 -24.06 16 19 Si 0.88 18.91 27.74 -169.99 -4.71 14.19 16 20 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 21 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.27 -5.25 6.52 56.52 0.37 -4.89 16 23 C -0.11 -0.72 9.70 -39.59 -0.38 -1.10 16 24 C -0.10 -0.74 9.83 -39.55 -0.39 -1.13 16 25 C -0.04 -0.32 6.31 -39.49 -0.25 -0.57 16 26 Cl -0.07 -0.53 27.30 -51.86 -1.42 -1.95 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.07 0.33 8.09 -51.93 -0.42 -0.09 16 29 H 0.07 0.41 6.91 -51.93 -0.36 0.06 16 30 H 0.13 0.73 8.06 -52.49 -0.42 0.30 16 31 H 0.08 0.42 8.08 -51.93 -0.42 0.00 16 32 H 0.08 0.42 8.09 -51.93 -0.42 0.00 16 33 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.40 3.18 8.49 -40.82 -0.35 2.83 16 36 H 0.41 6.18 7.45 -40.82 -0.30 5.87 16 37 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 38 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 39 H 0.37 7.64 5.76 -40.82 -0.24 7.40 16 40 H 0.28 7.22 8.31 -40.82 -0.34 6.88 16 41 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 LS Contribution 376.12 15.07 5.67 5.67 Total: -1.00 -33.59 376.12 -9.23 -42.82 By element: Atomic # 1 Polarization: 19.35 SS G_CDS: -5.44 Total: 13.91 kcal Atomic # 6 Polarization: 11.69 SS G_CDS: -3.48 Total: 8.21 kcal Atomic # 7 Polarization: -57.43 SS G_CDS: -0.01 Total: -57.44 kcal Atomic # 8 Polarization: -25.59 SS G_CDS: 0.17 Total: -25.42 kcal Atomic # 14 Polarization: 18.91 SS G_CDS: -4.71 Total: 14.19 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.42 Total: -1.95 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.59 -9.23 -42.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000361609032.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.391 kcal (2) G-P(sol) polarization free energy of solvation -33.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds