Wall clock time and date at job start Tue Mar 31 2020 22:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34235 * 116.99709 * 2 1 4 4 O 1.20822 * 120.00192 * 359.97438 * 3 2 1 5 5 C 1.50697 * 119.99619 * 179.97438 * 3 2 1 6 6 C 1.50705 * 109.47058 * 180.02562 * 5 3 2 7 7 O 1.33675 * 125.81089 * 269.97795 * 6 5 3 8 8 C 1.34208 * 110.91204 * 180.02562 * 7 6 5 9 9 C 1.34173 * 109.14664 * 359.97438 * 8 7 6 10 10 C 1.50696 * 127.02258 * 179.97438 * 9 8 7 11 11 C 1.36493 * 125.81263 * 90.32762 * 6 5 3 12 12 C 1.47297 * 127.19557 * 359.94003 * 11 6 5 13 13 O 1.21639 * 120.00500 * 270.20694 * 12 11 6 14 14 N 1.34780 * 120.00023 * 90.21177 * 12 11 6 15 15 C 1.36969 * 119.99644 * 359.97438 * 14 12 11 16 16 H 1.07994 * 120.00103 * 16.62803 * 15 14 12 17 17 C 1.38983 * 119.99882 * 196.62856 * 15 14 12 18 18 N 1.31412 * 119.99626 * 20.82693 * 17 15 14 19 19 Si 1.86793 * 119.99844 * 200.82399 * 17 15 14 20 20 H 1.48493 * 109.47306 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47237 * 120.00349 * 19 17 15 22 22 H 1.48501 * 109.46858 * 239.99731 * 19 17 15 23 23 C 1.46493 * 120.00372 * 179.97438 * 14 12 11 24 24 C 1.50697 * 109.47160 * 84.08558 * 23 14 12 25 25 O 1.20831 * 119.99929 * 359.97438 * 24 23 14 26 26 O 1.34228 * 120.00137 * 180.02562 * 24 23 14 27 27 C 1.45209 * 116.99940 * 180.02562 * 26 24 23 28 28 H 1.08994 * 109.47596 * 300.00517 * 1 2 3 29 29 H 1.09011 * 109.46714 * 60.00172 * 1 2 3 30 30 H 1.08998 * 109.47128 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47400 * 60.00479 * 5 3 2 32 32 H 1.09002 * 109.47577 * 299.99961 * 5 3 2 33 33 H 1.08003 * 125.43101 * 179.97438 * 8 7 6 34 34 H 1.08999 * 109.47134 * 90.02633 * 10 9 8 35 35 H 1.09001 * 109.47066 * 330.02727 * 10 9 8 36 36 H 1.09002 * 109.47225 * 210.02675 * 10 9 8 37 37 H 0.97008 * 119.99683 * 180.02562 * 18 17 15 38 38 H 1.09003 * 109.47423 * 204.08585 * 23 14 12 39 39 H 1.08998 * 109.47340 * 324.08597 * 23 14 12 40 40 H 1.09002 * 109.46655 * 299.99460 * 27 26 24 41 41 H 1.08999 * 109.47290 * 60.00015 * 27 26 24 42 42 H 1.09003 * 109.46475 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5662 1.2749 0.0006 6 6 3.9935 2.7201 0.0011 7 8 4.2161 3.4703 -1.0827 8 6 4.5841 4.7138 -0.7372 9 6 4.6111 4.8090 0.6009 10 6 4.9708 6.0237 1.4171 11 6 4.2256 3.4839 1.1082 12 6 4.1096 3.0689 2.5167 13 8 3.0508 3.1935 3.1024 14 7 5.1767 2.5510 3.1568 15 6 6.3689 2.4103 2.4973 16 1 6.5422 2.9447 1.5750 17 6 7.3556 1.5796 3.0150 18 7 7.0366 0.6349 3.8710 19 14 9.1351 1.8061 2.4940 20 1 9.2290 2.9306 1.5288 21 1 9.9657 2.1080 3.6875 22 1 9.6253 0.5599 1.8522 23 6 5.0616 2.1387 4.5578 24 6 4.5001 0.7419 4.6258 25 8 4.2239 0.1516 3.6083 26 8 4.3057 0.1540 5.8167 27 6 3.7623 -1.1926 5.8062 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8901 30 1 -0.3633 -1.0276 -0.0005 31 1 3.9563 0.7807 -0.8892 32 1 3.9557 0.7810 0.8908 33 1 4.8209 5.5110 -1.4263 34 1 4.0722 6.6086 1.6134 35 1 5.6874 6.6326 0.8660 36 1 5.4128 5.7085 2.3623 37 1 7.7254 0.0554 4.2326 38 1 6.0466 2.1575 5.0242 39 1 4.3970 2.8235 5.0846 40 1 2.7869 -1.1869 5.3198 41 1 4.4368 -1.8524 5.2604 42 1 3.6549 -1.5489 6.8307 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362810243.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:50:57 Heat of formation + Delta-G solvation = -193.967067 kcal Electronic energy + Delta-G solvation = -31550.200895 eV Core-core repulsion = 27076.754221 eV Total energy + Delta-G solvation = -4473.446674 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.129 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -43.46964 -41.49917 -41.30889 -39.99950 -37.67887 -37.29424 -36.54079 -34.78309 -33.90062 -33.48544 -30.74296 -29.72216 -28.46692 -27.91136 -27.43537 -26.67204 -23.96031 -22.66113 -21.92852 -20.97645 -20.53622 -19.24181 -18.93313 -18.48156 -18.23895 -17.82457 -17.64862 -17.27809 -17.13437 -16.82254 -16.66397 -16.13745 -15.99099 -15.51342 -15.06777 -14.76624 -14.55027 -14.43867 -14.25241 -14.18276 -13.93327 -13.82875 -13.50043 -13.39881 -13.21773 -13.11360 -13.02732 -12.87112 -12.58753 -12.48634 -12.23752 -12.05542 -11.90464 -11.77665 -11.58453 -11.54994 -10.96806 -10.83033 -10.19041 -9.93401 -9.39531 -8.40672 -5.94631 0.59228 1.01497 1.33640 1.39357 1.49861 1.58798 1.63214 1.67418 1.75324 2.07933 2.16046 2.33416 2.85354 3.08110 3.42789 3.75389 4.01088 4.02563 4.14786 4.22966 4.23659 4.24565 4.31159 4.35473 4.40830 4.41710 4.50781 4.59455 4.65860 4.71374 4.78614 4.84293 5.02856 5.07303 5.11557 5.22342 5.43072 5.56662 5.62078 5.67394 6.15514 6.33615 6.56266 7.03384 7.18094 7.39157 7.80701 8.66520 Molecular weight = 339.13amu Principal moments of inertia in cm(-1) A = 0.008514 B = 0.006423 C = 0.004563 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3288.047350 B = 4358.594379 C = 6134.905158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.360 6.360 3 C 0.469 3.531 4 O -0.526 6.526 5 C -0.028 4.028 6 C 0.015 3.985 7 O -0.174 6.174 8 C -0.019 4.019 9 C -0.182 4.182 10 C -0.075 4.075 11 C -0.177 4.177 12 C 0.524 3.476 13 O -0.632 6.632 14 N -0.419 5.419 15 C -0.342 4.342 16 H 0.104 0.896 17 C 0.005 3.995 18 N -0.889 5.889 19 Si 0.990 3.010 20 H -0.260 1.260 21 H -0.272 1.272 22 H -0.285 1.285 23 C 0.150 3.850 24 C 0.488 3.512 25 O -0.531 6.531 26 O -0.376 6.376 27 C 0.039 3.961 28 H 0.049 0.951 29 H 0.072 0.928 30 H 0.140 0.860 31 H 0.159 0.841 32 H 0.119 0.881 33 H 0.258 0.742 34 H 0.069 0.931 35 H 0.103 0.897 36 H 0.047 0.953 37 H 0.275 0.725 38 H 0.128 0.872 39 H 0.086 0.914 40 H 0.049 0.951 41 H 0.049 0.951 42 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.707 0.637 -5.111 5.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.276 6.276 3 C 0.313 3.687 4 O -0.415 6.415 5 C -0.065 4.065 6 C -0.036 4.036 7 O -0.071 6.071 8 C -0.084 4.084 9 C -0.184 4.184 10 C -0.132 4.132 11 C -0.181 4.181 12 C 0.314 3.686 13 O -0.520 6.520 14 N -0.135 5.135 15 C -0.469 4.469 16 H 0.122 0.878 17 C -0.198 4.198 18 N -0.527 5.527 19 Si 0.814 3.186 20 H -0.183 1.183 21 H -0.198 1.198 22 H -0.211 1.211 23 C 0.024 3.976 24 C 0.330 3.670 25 O -0.419 6.419 26 O -0.293 6.293 27 C -0.055 4.055 28 H 0.068 0.932 29 H 0.090 0.910 30 H 0.158 0.842 31 H 0.177 0.823 32 H 0.137 0.863 33 H 0.274 0.726 34 H 0.087 0.913 35 H 0.121 0.879 36 H 0.066 0.934 37 H 0.085 0.915 38 H 0.146 0.854 39 H 0.104 0.896 40 H 0.067 0.933 41 H 0.068 0.932 42 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -2.461 0.502 -5.267 5.835 hybrid contribution 0.428 -0.420 0.303 0.672 sum -2.033 0.082 -4.964 5.365 Atomic orbital electron populations 1.23597 0.74410 1.06001 1.02407 1.86481 1.25404 1.31923 1.83841 1.23584 0.91890 0.81606 0.71649 1.90657 1.67582 1.37273 1.45997 1.19627 0.88133 0.89905 1.08856 1.21288 1.05433 0.93073 0.83792 1.83607 1.67833 1.22032 1.33604 1.24431 1.03318 0.85137 0.95553 1.21754 1.06911 0.94901 0.94829 1.20150 1.01806 0.92681 0.98513 1.21048 1.07988 0.96034 0.93032 1.17598 0.82526 0.82619 0.85851 1.90617 1.29538 1.63220 1.68655 1.43539 1.09751 1.51581 1.08644 1.19838 0.89496 1.27653 1.09877 0.87848 1.26007 1.03971 0.92918 0.96894 1.69933 1.35060 1.15851 1.31844 0.84911 0.76969 0.78242 0.78479 1.18338 1.19751 1.21094 1.20607 1.02959 0.88706 0.85315 1.23889 0.72455 0.89621 0.80988 1.90453 1.48983 1.65482 1.36996 1.86421 1.76792 1.32226 1.33864 1.23302 0.97612 0.79684 1.04879 0.93233 0.90965 0.84227 0.82311 0.86328 0.72644 0.91258 0.87887 0.93394 0.91524 0.85395 0.89564 0.93253 0.93242 0.84860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.74 10.56 113.37 1.20 1.94 16 2 O -0.36 -12.46 10.57 -51.46 -0.54 -13.01 16 3 C 0.47 18.95 7.95 71.24 0.57 19.51 16 4 O -0.53 -24.20 15.78 21.98 0.35 -23.85 16 5 C -0.03 -1.11 6.17 29.10 0.18 -0.93 16 6 C 0.02 0.64 5.87 25.28 0.15 0.79 16 7 O -0.17 -6.23 10.52 4.32 0.05 -6.19 16 8 C -0.02 -0.57 11.96 66.89 0.80 0.23 16 9 C -0.18 -6.76 6.36 -18.49 -0.12 -6.88 16 10 C -0.07 -2.30 10.38 71.23 0.74 -1.56 16 11 C -0.18 -8.19 4.24 -19.00 -0.08 -8.27 16 12 C 0.52 27.71 6.86 86.63 0.59 28.30 16 13 O -0.63 -37.33 16.79 -4.15 -0.07 -37.40 16 14 N -0.42 -21.51 2.17 -643.46 -1.40 -22.91 16 15 C -0.34 -17.02 9.17 84.07 0.77 -16.25 16 16 H 0.10 5.10 6.81 -2.91 -0.02 5.08 16 17 C 0.00 0.23 4.89 84.93 0.42 0.64 16 18 N -0.89 -44.32 9.24 21.67 0.20 -44.12 16 19 Si 0.99 38.02 29.60 68.60 2.03 40.05 16 20 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 21 H -0.27 -10.14 7.11 99.48 0.71 -9.43 16 22 H -0.28 -11.06 7.11 99.48 0.71 -10.35 16 23 C 0.15 7.33 5.14 85.63 0.44 7.77 16 24 C 0.49 24.30 6.13 71.24 0.44 24.74 16 25 O -0.53 -29.20 15.79 21.95 0.35 -28.86 16 26 O -0.38 -16.04 10.57 -51.40 -0.54 -16.58 16 27 C 0.04 1.29 10.56 113.37 1.20 2.49 16 28 H 0.05 1.42 8.13 -2.39 -0.02 1.40 16 29 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 30 H 0.14 2.42 8.14 -2.39 -0.02 2.40 16 31 H 0.16 4.71 8.14 -2.39 -0.02 4.69 16 32 H 0.12 5.42 7.93 -2.39 -0.02 5.40 16 33 H 0.26 4.47 8.06 -2.91 -0.02 4.44 16 34 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 35 H 0.10 2.28 8.14 -2.39 -0.02 2.26 16 36 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 37 H 0.27 13.00 8.31 -92.70 -0.77 12.23 16 38 H 0.13 6.11 6.35 -2.39 -0.02 6.10 16 39 H 0.09 4.06 7.61 -2.39 -0.02 4.04 16 40 H 0.05 1.65 8.13 -2.39 -0.02 1.63 16 41 H 0.05 1.72 8.13 -2.39 -0.02 1.70 16 42 H 0.13 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -77.96 375.02 8.76 -69.20 By element: Atomic # 1 Polarization: 30.08 SS G_CDS: 1.06 Total: 31.14 kcal Atomic # 6 Polarization: 45.24 SS G_CDS: 7.29 Total: 52.52 kcal Atomic # 7 Polarization: -65.83 SS G_CDS: -1.20 Total: -67.03 kcal Atomic # 8 Polarization: -125.47 SS G_CDS: -0.42 Total: -125.88 kcal Atomic # 14 Polarization: 38.02 SS G_CDS: 2.03 Total: 40.05 kcal Total: -77.96 8.76 -69.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362810243.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.771 kcal (2) G-P(sol) polarization free energy of solvation -77.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds