Wall clock time and date at job start Tue Mar 31 2020 22:14:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00076 * 2 1 4 4 H 1.48497 * 109.47002 * 269.99746 * 3 2 1 5 5 H 1.48502 * 109.47154 * 29.99427 * 3 2 1 6 6 H 1.48497 * 109.47168 * 149.99663 * 3 2 1 7 7 C 1.37880 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99744 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99621 * 180.02562 * 7 2 1 10 10 S 1.81397 * 109.46840 * 180.02562 * 9 7 2 11 11 C 1.81402 * 102.99970 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.47256 * 180.02562 * 11 10 9 13 13 O 1.21285 * 119.99579 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99910 * 179.97438 * 12 11 10 15 15 C 1.47150 * 120.98211 * 0.02562 * 14 12 11 16 16 C 1.53296 * 108.38576 * 129.44077 * 15 14 12 17 17 O 1.42963 * 109.22207 * 52.30122 * 16 15 14 18 18 C 1.42959 * 114.16598 * 297.41596 * 17 16 15 19 19 H 1.09001 * 109.51632 * 302.61185 * 18 17 16 20 20 C 1.50694 * 109.51368 * 182.50881 * 18 17 16 21 21 C 1.38240 * 119.97428 * 324.72390 * 20 18 17 22 22 C 1.38204 * 120.02596 * 179.76773 * 21 20 18 23 23 C 1.38453 * 119.97282 * 0.51140 * 22 21 20 24 24 F 1.35105 * 120.02503 * 179.76839 * 23 22 21 25 25 C 1.38460 * 119.94816 * 359.74500 * 23 22 21 26 26 C 1.38191 * 119.97562 * 0.02562 * 25 23 22 27 27 C 1.47144 * 120.98031 * 179.97438 * 14 12 11 28 28 H 0.96999 * 119.99769 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47507 * 60.00019 * 9 7 2 30 30 H 1.09004 * 109.47067 * 300.00024 * 9 7 2 31 31 H 1.08997 * 109.47080 * 59.99655 * 11 10 9 32 32 H 1.09007 * 109.47035 * 299.99762 * 11 10 9 33 33 H 1.08993 * 109.68655 * 9.71252 * 15 14 12 34 34 H 1.09005 * 109.67857 * 249.16387 * 15 14 12 35 35 H 1.09003 * 109.50953 * 172.22359 * 16 15 14 36 36 H 1.08997 * 109.51109 * 292.32304 * 16 15 14 37 37 H 1.08001 * 119.98793 * 0.02562 * 21 20 18 38 38 H 1.08003 * 120.01086 * 180.25589 * 22 21 20 39 39 H 1.08004 * 120.00933 * 179.97438 * 25 23 22 40 40 H 1.08002 * 119.98631 * 180.02562 * 26 25 23 41 41 H 1.09001 * 109.68529 * 110.83375 * 27 14 12 42 42 H 1.09004 * 109.68383 * 350.28201 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 16 4.1161 -2.9044 0.0010 11 6 5.9185 -2.7000 0.0009 12 6 6.5778 -4.0552 0.0002 13 8 5.8985 -5.0599 0.0002 14 7 7.9222 -4.1506 -0.0005 15 6 8.7670 -2.9458 0.0000 16 6 9.8018 -3.0814 1.1229 17 8 10.4803 -4.3326 0.9891 18 6 9.6319 -5.4755 1.1218 19 1 9.1284 -5.4451 2.0880 20 6 10.4599 -6.7309 1.0251 21 6 11.5509 -6.7751 0.1772 22 6 12.3138 -7.9243 0.0913 23 6 11.9788 -9.0351 0.8469 24 9 12.7212 -10.1606 0.7602 25 6 10.8827 -8.9914 1.6918 26 6 10.1242 -7.8396 1.7796 27 6 8.5884 -5.4625 -0.0007 28 1 -0.4850 0.8401 -0.0004 29 1 3.8745 -0.6801 0.8911 30 1 3.8752 -0.6805 -0.8889 31 1 6.2217 -2.1485 0.8909 32 1 6.2216 -2.1485 -0.8891 33 1 8.1497 -2.0645 0.1741 34 1 9.2762 -2.8541 -0.9594 35 1 10.5229 -2.2669 1.0537 36 1 9.2983 -3.0408 2.0888 37 1 11.8096 -5.9099 -0.4151 38 1 13.1686 -7.9572 -0.5681 39 1 10.6203 -9.8574 2.2813 40 1 9.2694 -7.8052 2.4388 41 1 9.0796 -5.6248 -0.9601 42 1 7.8528 -6.2479 0.1730 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000413009305.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:11 Heat of formation + Delta-G solvation = -89.423170 kcal Electronic energy + Delta-G solvation = -25824.211334 eV Core-core repulsion = 21810.423684 eV Total energy + Delta-G solvation = -4013.787650 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.28187 -40.81239 -39.45584 -38.26948 -35.03168 -33.28480 -33.06959 -31.59001 -30.45014 -29.74786 -29.33080 -27.30224 -24.67459 -23.66363 -22.99143 -22.55123 -21.41769 -19.55554 -18.13251 -17.52693 -17.27908 -16.97578 -16.67612 -16.46316 -15.98500 -15.93744 -15.74785 -15.27906 -15.14109 -14.93896 -14.16640 -14.13566 -14.03176 -13.96899 -13.63181 -13.50324 -13.11480 -12.90357 -12.88150 -12.53128 -12.30210 -12.21562 -12.05644 -11.78515 -11.49825 -11.13824 -10.86846 -10.58638 -10.55099 -10.18583 -9.89842 -9.68227 -9.54861 -9.18790 -8.95243 -8.76094 -8.74557 -6.83628 -6.20698 -4.23188 0.61871 0.79908 2.07314 2.53561 2.76289 3.02807 3.17024 3.23521 3.24632 3.25201 3.56743 3.83254 4.20854 4.26987 4.27519 4.32062 4.38080 4.49134 4.58984 4.63681 4.78528 4.83765 4.86694 4.97099 5.09722 5.15464 5.17509 5.25423 5.35741 5.37006 5.44193 5.52414 5.53163 5.68296 5.78490 5.99585 6.08256 6.41956 6.49955 6.62482 6.64188 7.04741 7.38891 8.03516 8.27436 8.82885 9.34332 10.91417 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.029918 B = 0.001974 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.673583 B =14183.812994 C =14834.463821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.079 3.921 3 Si 0.880 3.120 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.513 4.513 8 H 0.085 0.915 9 C 0.031 3.969 10 S -0.195 6.195 11 C -0.139 4.139 12 C 0.538 3.462 13 O -0.507 6.507 14 N -0.622 5.622 15 C 0.070 3.930 16 C 0.049 3.951 17 O -0.372 6.372 18 C 0.122 3.878 19 H 0.077 0.923 20 C -0.094 4.094 21 C -0.061 4.061 22 C -0.157 4.157 23 C 0.101 3.899 24 F -0.140 7.140 25 C -0.153 4.153 26 C -0.075 4.075 27 C 0.091 3.909 28 H 0.268 0.732 29 H 0.034 0.966 30 H 0.030 0.970 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.080 0.920 35 H 0.111 0.889 36 H 0.060 0.940 37 H 0.139 0.861 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.136 0.864 41 H 0.077 0.923 42 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.865 -10.497 2.302 30.801 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.125 4.125 3 Si 0.707 3.293 4 H -0.199 1.199 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.552 4.552 8 H 0.102 0.898 9 C -0.117 4.117 10 S 0.031 5.969 11 C -0.290 4.290 12 C 0.325 3.675 13 O -0.381 6.381 14 N -0.359 5.359 15 C -0.053 4.053 16 C -0.029 4.029 17 O -0.291 6.291 18 C 0.064 3.936 19 H 0.094 0.906 20 C -0.094 4.094 21 C -0.079 4.079 22 C -0.175 4.175 23 C 0.082 3.918 24 F -0.119 7.119 25 C -0.172 4.172 26 C -0.093 4.093 27 C -0.031 4.031 28 H 0.078 0.922 29 H 0.053 0.947 30 H 0.048 0.952 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.117 0.883 34 H 0.099 0.901 35 H 0.129 0.871 36 H 0.078 0.922 37 H 0.157 0.843 38 H 0.155 0.845 39 H 0.156 0.844 40 H 0.154 0.846 41 H 0.095 0.905 42 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 27.940 -11.925 2.259 30.463 hybrid contribution 1.041 2.091 -0.017 2.336 sum 28.981 -9.834 2.242 30.686 Atomic orbital electron populations 1.69868 1.06143 1.27296 1.49427 1.24870 0.94764 0.98709 0.94184 0.86784 0.80226 0.83605 0.78734 1.19908 1.20800 1.19174 1.20428 0.86780 0.95372 1.52658 0.89752 1.21544 1.01397 0.89770 0.99025 1.87476 0.95324 1.16284 1.97841 1.23486 1.01738 0.97832 1.05949 1.19992 0.81017 0.90946 0.75521 1.90744 1.62067 1.37762 1.47509 1.48098 1.05343 1.06752 1.75675 1.22495 0.93860 0.88493 1.00475 1.23020 0.95680 0.86520 0.97652 1.87954 1.34441 1.13272 1.93401 1.21179 0.89655 0.84171 0.98644 0.90552 1.19503 0.97269 0.94173 0.98504 1.20885 0.93105 0.97176 0.96708 1.21189 1.02235 0.92653 1.01467 1.17797 0.91978 0.83173 0.98861 1.91511 1.75575 1.49617 1.95166 1.21112 0.95493 0.99995 1.00616 1.20864 0.99048 0.91529 0.97878 1.22225 0.95579 0.86473 0.98869 0.92188 0.94737 0.95183 0.88038 0.87964 0.88293 0.90131 0.87117 0.92164 0.84307 0.84538 0.84376 0.84573 0.90478 0.87650 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.74 13.96 55.43 0.77 -25.97 16 2 C 0.08 2.25 5.47 -17.82 -0.10 2.15 16 3 Si 0.88 20.48 27.47 -169.99 -4.67 15.81 16 4 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 5 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 6 H -0.27 -5.84 6.54 56.52 0.37 -5.47 16 7 C -0.51 -14.58 9.68 -34.44 -0.33 -14.91 16 8 H 0.08 2.66 7.96 -52.49 -0.42 2.24 16 9 C 0.03 0.72 4.77 36.01 0.17 0.89 16 10 S -0.20 -4.20 20.79 -107.50 -2.24 -6.43 16 11 C -0.14 -2.09 4.80 36.01 0.17 -1.91 16 12 C 0.54 8.03 7.73 -10.98 -0.08 7.95 16 13 O -0.51 -9.63 15.33 5.55 0.09 -9.54 16 14 N -0.62 -6.78 3.02 -172.30 -0.52 -7.30 16 15 C 0.07 0.52 6.54 -3.53 -0.02 0.50 16 16 C 0.05 0.32 6.98 37.31 0.26 0.58 16 17 O -0.37 -3.06 9.54 -35.23 -0.34 -3.40 16 18 C 0.12 1.02 2.99 -27.75 -0.08 0.93 16 19 H 0.08 0.64 8.05 -51.93 -0.42 0.23 16 20 C -0.09 -0.74 5.00 -104.62 -0.52 -1.26 16 21 C -0.06 -0.45 9.35 -39.59 -0.37 -0.82 16 22 C -0.16 -1.15 10.03 -39.51 -0.40 -1.55 16 23 C 0.10 0.84 7.30 -39.42 -0.29 0.55 16 24 F -0.14 -1.28 17.27 2.25 0.04 -1.24 16 25 C -0.15 -1.13 10.03 -39.52 -0.40 -1.53 16 26 C -0.08 -0.55 9.68 -39.60 -0.38 -0.93 16 27 C 0.09 0.90 5.91 -3.55 -0.02 0.88 16 28 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 29 H 0.03 0.78 7.20 -51.93 -0.37 0.41 16 30 H 0.03 0.67 7.57 -51.92 -0.39 0.28 16 31 H 0.10 1.29 7.66 -51.93 -0.40 0.89 16 32 H 0.10 1.32 8.02 -51.92 -0.42 0.91 16 33 H 0.10 0.65 6.05 -51.93 -0.31 0.33 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.11 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.14 0.91 7.64 -52.49 -0.40 0.51 16 38 H 0.14 0.77 8.06 -52.48 -0.42 0.34 16 39 H 0.14 0.79 8.06 -52.48 -0.42 0.37 16 40 H 0.14 0.79 8.06 -52.49 -0.42 0.37 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.11 1.19 7.08 -51.93 -0.37 0.82 16 LS Contribution 366.66 15.07 5.53 5.53 Total: -1.00 -33.88 366.66 -9.36 -43.24 By element: Atomic # 1 Polarization: 3.43 SS G_CDS: -5.63 Total: -2.20 kcal Atomic # 6 Polarization: -6.11 SS G_CDS: -2.40 Total: -8.50 kcal Atomic # 7 Polarization: -33.52 SS G_CDS: 0.25 Total: -33.27 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -0.25 Total: -12.94 kcal Atomic # 9 Polarization: -1.28 SS G_CDS: 0.04 Total: -1.24 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.67 Total: 15.81 kcal Atomic # 16 Polarization: -4.20 SS G_CDS: -2.24 Total: -6.43 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.88 -9.36 -43.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413009305.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.184 kcal (2) G-P(sol) polarization free energy of solvation -33.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.239 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds