Wall clock time and date at job start Tue Mar 31 2020 22:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86797 * 120.00076 * 2 1 4 4 H 1.48497 * 109.47002 * 269.99746 * 3 2 1 5 5 H 1.48502 * 109.47154 * 29.99427 * 3 2 1 6 6 H 1.48497 * 109.47168 * 149.99663 * 3 2 1 7 7 C 1.37880 * 119.99619 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99744 * 0.02562 * 7 2 1 9 9 C 1.50699 * 119.99621 * 180.02562 * 7 2 1 10 10 S 1.81397 * 109.46840 * 180.02562 * 9 7 2 11 11 C 1.81402 * 102.99970 * 179.97438 * 10 9 7 12 12 C 1.50703 * 109.47256 * 180.02562 * 11 10 9 13 13 O 1.21285 * 119.99579 * 359.97438 * 12 11 10 14 14 N 1.34776 * 119.99910 * 179.97438 * 12 11 10 15 15 C 1.47150 * 120.98211 * 0.02562 * 14 12 11 16 16 C 1.53296 * 108.38576 * 129.44077 * 15 14 12 17 17 O 1.42963 * 109.22207 * 52.30122 * 16 15 14 18 18 C 1.42959 * 114.16598 * 297.41596 * 17 16 15 19 19 H 1.09001 * 109.51632 * 302.61185 * 18 17 16 20 20 C 1.50694 * 109.51368 * 182.50881 * 18 17 16 21 21 C 1.38240 * 119.97428 * 324.72390 * 20 18 17 22 22 C 1.38204 * 120.02596 * 179.76773 * 21 20 18 23 23 C 1.38453 * 119.97282 * 0.51140 * 22 21 20 24 24 F 1.35105 * 120.02503 * 179.76839 * 23 22 21 25 25 C 1.38460 * 119.94816 * 359.74500 * 23 22 21 26 26 C 1.38191 * 119.97562 * 0.02562 * 25 23 22 27 27 C 1.47144 * 120.98031 * 179.97438 * 14 12 11 28 28 H 0.96999 * 119.99769 * 0.02562 * 1 2 3 29 29 H 1.08994 * 109.47507 * 60.00019 * 9 7 2 30 30 H 1.09004 * 109.47067 * 300.00024 * 9 7 2 31 31 H 1.08997 * 109.47080 * 59.99655 * 11 10 9 32 32 H 1.09007 * 109.47035 * 299.99762 * 11 10 9 33 33 H 1.08993 * 109.68655 * 9.71252 * 15 14 12 34 34 H 1.09005 * 109.67857 * 249.16387 * 15 14 12 35 35 H 1.09003 * 109.50953 * 172.22359 * 16 15 14 36 36 H 1.08997 * 109.51109 * 292.32304 * 16 15 14 37 37 H 1.08001 * 119.98793 * 0.02562 * 21 20 18 38 38 H 1.08003 * 120.01086 * 180.25589 * 22 21 20 39 39 H 1.08004 * 120.00933 * 179.97438 * 25 23 22 40 40 H 1.08002 * 119.98631 * 180.02562 * 26 25 23 41 41 H 1.09001 * 109.68529 * 110.83375 * 27 14 12 42 42 H 1.09004 * 109.68383 * 350.28201 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0463 -1.4001 5 1 1.4466 2.6527 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 16 4.1161 -2.9044 0.0010 11 6 5.9185 -2.7000 0.0009 12 6 6.5778 -4.0552 0.0002 13 8 5.8985 -5.0599 0.0002 14 7 7.9222 -4.1506 -0.0005 15 6 8.7670 -2.9458 0.0000 16 6 9.8018 -3.0814 1.1229 17 8 10.4803 -4.3326 0.9891 18 6 9.6319 -5.4755 1.1218 19 1 9.1284 -5.4451 2.0880 20 6 10.4599 -6.7309 1.0251 21 6 11.5509 -6.7751 0.1772 22 6 12.3138 -7.9243 0.0913 23 6 11.9788 -9.0351 0.8469 24 9 12.7212 -10.1606 0.7602 25 6 10.8827 -8.9914 1.6918 26 6 10.1242 -7.8396 1.7796 27 6 8.5884 -5.4625 -0.0007 28 1 -0.4850 0.8401 -0.0004 29 1 3.8745 -0.6801 0.8911 30 1 3.8752 -0.6805 -0.8889 31 1 6.2217 -2.1485 0.8909 32 1 6.2216 -2.1485 -0.8891 33 1 8.1497 -2.0645 0.1741 34 1 9.2762 -2.8541 -0.9594 35 1 10.5229 -2.2669 1.0537 36 1 9.2983 -3.0408 2.0888 37 1 11.8096 -5.9099 -0.4151 38 1 13.1686 -7.9572 -0.5681 39 1 10.6203 -9.8574 2.2813 40 1 9.2694 -7.8052 2.4388 41 1 9.0796 -5.6248 -0.9601 42 1 7.8528 -6.2479 0.1730 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000413009305.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:14:10 Heat of formation + Delta-G solvation = -110.417288 kcal Electronic energy + Delta-G solvation = -25825.121708 eV Core-core repulsion = 21810.423684 eV Total energy + Delta-G solvation = -4014.698024 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.93255 -41.60593 -40.24469 -39.03807 -35.93189 -35.18353 -33.91617 -32.14152 -31.61761 -31.25556 -30.40326 -28.10733 -25.35840 -24.68253 -24.22953 -23.57062 -22.08574 -20.46334 -19.07611 -18.75797 -18.47176 -17.95102 -17.58985 -17.30853 -16.96316 -16.62706 -16.57703 -16.40846 -16.04766 -15.97552 -15.49928 -15.07105 -14.96717 -14.91884 -14.51729 -14.45424 -14.32006 -14.16470 -14.11036 -13.53485 -13.50169 -13.14580 -12.73798 -12.63010 -12.39187 -12.20600 -12.10746 -12.04763 -11.79636 -11.74638 -11.29430 -11.02384 -10.87326 -10.61555 -10.10073 -9.89939 -9.50084 -8.53247 -8.35196 -6.46062 0.01662 0.24757 0.66844 1.36245 1.39875 1.41953 1.50263 1.80356 1.93857 2.32168 2.44767 2.67198 2.97765 3.24896 3.35574 3.67341 3.67727 3.75654 3.88319 3.97087 4.03396 4.04093 4.19129 4.25487 4.30373 4.32177 4.38088 4.52401 4.61811 4.69357 4.78642 4.78799 4.89845 4.92285 4.97579 5.12560 5.21169 5.27835 5.35357 5.43187 5.85569 6.06312 6.08579 6.10883 6.58668 6.95810 7.16208 8.81130 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.029918 B = 0.001974 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 935.673583 B =14183.812994 C =14834.463821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.014 3.986 3 Si 0.961 3.039 4 H -0.261 1.261 5 H -0.281 1.281 6 H -0.236 1.236 7 C -0.533 4.533 8 H 0.029 0.971 9 C 0.043 3.957 10 S -0.267 6.267 11 C -0.116 4.116 12 C 0.535 3.465 13 O -0.561 6.561 14 N -0.611 5.611 15 C 0.063 3.937 16 C 0.047 3.953 17 O -0.377 6.377 18 C 0.133 3.867 19 H 0.074 0.926 20 C -0.102 4.102 21 C -0.062 4.062 22 C -0.158 4.158 23 C 0.083 3.917 24 F -0.148 7.148 25 C -0.157 4.157 26 C -0.081 4.081 27 C 0.091 3.909 28 H 0.272 0.728 29 H 0.050 0.950 30 H 0.048 0.952 31 H 0.134 0.866 32 H 0.133 0.867 33 H 0.115 0.885 34 H 0.098 0.902 35 H 0.140 0.860 36 H 0.059 0.941 37 H 0.150 0.850 38 H 0.152 0.848 39 H 0.151 0.849 40 H 0.147 0.853 41 H 0.086 0.914 42 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.590 -8.111 2.322 33.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.185 4.185 3 Si 0.782 3.218 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.159 1.159 7 C -0.571 4.571 8 H 0.047 0.953 9 C -0.105 4.105 10 S -0.041 6.041 11 C -0.266 4.266 12 C 0.323 3.677 13 O -0.439 6.439 14 N -0.346 5.346 15 C -0.059 4.059 16 C -0.030 4.030 17 O -0.296 6.296 18 C 0.074 3.926 19 H 0.092 0.908 20 C -0.102 4.102 21 C -0.080 4.080 22 C -0.176 4.176 23 C 0.064 3.936 24 F -0.127 7.127 25 C -0.176 4.176 26 C -0.099 4.099 27 C -0.032 4.032 28 H 0.081 0.919 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.152 0.848 32 H 0.151 0.849 33 H 0.133 0.867 34 H 0.116 0.884 35 H 0.158 0.842 36 H 0.078 0.922 37 H 0.168 0.832 38 H 0.170 0.830 39 H 0.169 0.831 40 H 0.165 0.835 41 H 0.104 0.896 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 31.722 -9.537 2.281 33.203 hybrid contribution -0.060 1.231 -0.029 1.232 sum 31.662 -8.306 2.252 32.811 Atomic orbital electron populations 1.70047 1.08563 1.28814 1.50820 1.26024 0.95744 1.03600 0.93181 0.85518 0.79644 0.76968 0.79670 1.18542 1.20618 1.15861 1.20663 0.89772 0.93650 1.53055 0.95317 1.21291 0.97968 0.90984 1.00231 1.87752 1.02455 1.15797 1.98130 1.23470 0.95539 0.98674 1.08959 1.20022 0.82198 0.90181 0.75345 1.90734 1.63599 1.39184 1.50390 1.48128 1.04302 1.08526 1.73621 1.22860 0.93862 0.87264 1.01929 1.23219 0.96119 0.86507 0.97134 1.87960 1.34632 1.13701 1.93321 1.21000 0.89207 0.84692 0.97663 0.90838 1.19585 0.97539 0.94181 0.98944 1.21017 0.92857 0.97516 0.96628 1.21388 1.02634 0.92260 1.01330 1.18044 0.92475 0.83329 0.99714 1.91488 1.75835 1.50098 1.95300 1.21302 0.95209 1.00528 1.00530 1.21042 0.99363 0.91394 0.98058 1.22284 0.95339 0.85518 1.00058 0.91878 0.93145 0.93381 0.84810 0.84927 0.86697 0.88413 0.84186 0.92224 0.83229 0.82980 0.83124 0.83496 0.89583 0.89682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.47 13.96 21.45 0.30 -58.17 16 2 C 0.01 0.80 5.47 84.65 0.46 1.26 16 3 Si 0.96 41.03 27.47 68.60 1.88 42.92 16 4 H -0.26 -10.57 7.11 99.48 0.71 -9.86 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.24 -8.81 6.54 99.48 0.65 -8.16 16 7 C -0.53 -31.07 9.68 25.60 0.25 -30.82 16 8 H 0.03 1.93 7.96 -2.91 -0.02 1.91 16 9 C 0.04 1.98 4.77 71.24 0.34 2.32 16 10 S -0.27 -11.48 20.79 -56.49 -1.17 -12.65 16 11 C -0.12 -3.12 4.80 71.24 0.34 -2.78 16 12 C 0.53 15.14 7.73 87.66 0.68 15.81 16 13 O -0.56 -21.57 15.33 -3.05 -0.05 -21.61 16 14 N -0.61 -11.81 3.02 -817.41 -2.47 -14.28 16 15 C 0.06 0.66 6.54 86.35 0.56 1.23 16 16 C 0.05 0.42 6.98 72.08 0.50 0.92 16 17 O -0.38 -5.02 9.54 -148.98 -1.42 -6.44 16 18 C 0.13 1.97 2.99 29.94 0.09 2.06 16 19 H 0.07 1.13 8.05 -2.39 -0.02 1.11 16 20 C -0.10 -1.46 5.00 -19.86 -0.10 -1.56 16 21 C -0.06 -0.82 9.35 22.26 0.21 -0.61 16 22 C -0.16 -2.10 10.03 22.31 0.22 -1.88 16 23 C 0.08 1.32 7.30 22.37 0.16 1.48 16 24 F -0.15 -2.65 17.27 44.97 0.78 -1.87 16 25 C -0.16 -2.21 10.03 22.31 0.22 -1.98 16 26 C -0.08 -1.10 9.68 22.26 0.22 -0.89 16 27 C 0.09 1.66 5.91 86.35 0.51 2.17 16 28 H 0.27 15.50 8.31 -92.71 -0.77 14.73 16 29 H 0.05 2.13 7.20 -2.39 -0.02 2.11 16 30 H 0.05 2.02 7.57 -2.39 -0.02 2.00 16 31 H 0.13 2.79 7.66 -2.39 -0.02 2.77 16 32 H 0.13 2.83 8.02 -2.39 -0.02 2.81 16 33 H 0.11 0.88 6.05 -2.39 -0.01 0.86 16 34 H 0.10 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 36 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 37 H 0.15 1.59 7.64 -2.91 -0.02 1.57 16 38 H 0.15 1.45 8.06 -2.91 -0.02 1.43 16 39 H 0.15 1.62 8.06 -2.91 -0.02 1.59 16 40 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 41 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.08 1.94 7.08 -2.38 -0.02 1.92 16 Total: -1.00 -78.47 366.66 3.50 -74.97 By element: Atomic # 1 Polarization: 9.46 SS G_CDS: 0.98 Total: 10.43 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: 4.67 Total: -13.29 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: -2.17 Total: -72.45 kcal Atomic # 8 Polarization: -26.59 SS G_CDS: -1.47 Total: -28.06 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.78 Total: -1.87 kcal Atomic # 14 Polarization: 41.03 SS G_CDS: 1.88 Total: 42.92 kcal Atomic # 16 Polarization: -11.48 SS G_CDS: -1.17 Total: -12.65 kcal Total: -78.47 3.50 -74.97 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000413009305.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.450 kcal (2) G-P(sol) polarization free energy of solvation -78.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds