Wall clock time and date at job start Tue Mar 31 2020 22:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86802 * 119.99433 * 2 1 4 4 H 1.48507 * 109.46859 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47295 * 299.99590 * 3 2 1 6 6 H 1.48500 * 109.47187 * 60.00516 * 3 2 1 7 7 C 1.39888 * 120.00503 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00222 * 175.59318 * 7 2 1 9 9 C 1.41152 * 119.99719 * 355.59782 * 7 2 1 10 10 C 1.40890 * 120.15710 * 214.75432 * 9 7 2 11 11 C 1.36376 * 119.85014 * 179.75844 * 10 9 7 12 12 C 1.39471 * 120.17820 * 0.51706 * 11 10 9 13 13 N 1.39276 * 119.83863 * 179.75363 * 12 11 10 14 14 C 1.34772 * 119.99642 * 34.73842 * 13 12 11 15 15 O 1.21580 * 120.00298 * 355.74050 * 14 13 12 16 16 N 1.34777 * 119.99680 * 175.75009 * 14 13 12 17 17 C 1.46502 * 119.99923 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47241 * 179.97438 * 17 16 14 19 19 H 1.09003 * 109.50765 * 59.91042 * 18 17 16 20 20 C 1.53092 * 109.50877 * 179.97438 * 18 17 16 21 21 N 1.47014 * 109.25979 * 176.78252 * 20 18 17 22 22 C 1.47015 * 110.75171 * 301.38613 * 21 20 18 23 23 C 1.53091 * 109.25824 * 58.61530 * 22 21 20 24 24 O 1.43014 * 109.26075 * 303.14937 * 23 22 21 25 25 C 1.39585 * 120.31960 * 359.48032 * 12 11 10 26 26 Cl 1.73595 * 119.92394 * 180.23448 * 25 12 11 27 27 C 1.36475 * 120.14613 * 0.25536 * 25 12 11 28 28 H 0.96998 * 120.00290 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.07338 * 0.04108 * 10 9 7 30 30 H 1.07997 * 119.91132 * 180.24639 * 11 10 9 31 31 H 0.96996 * 119.99919 * 214.72598 * 13 12 11 32 32 H 0.97000 * 119.99967 * 359.97438 * 16 14 13 33 33 H 1.09007 * 109.47126 * 299.99461 * 17 16 14 34 34 H 1.09002 * 109.47517 * 59.99213 * 17 16 14 35 35 H 1.09003 * 109.50941 * 296.72123 * 20 18 17 36 36 H 1.09003 * 109.50590 * 56.80528 * 20 18 17 37 37 H 1.00898 * 111.00181 * 177.61332 * 21 20 18 38 38 H 1.08997 * 109.50961 * 178.55210 * 22 21 20 39 39 H 1.09011 * 109.50479 * 298.67892 * 22 21 20 40 40 H 1.08995 * 109.50981 * 63.08611 * 23 22 21 41 41 H 1.09004 * 109.50519 * 183.17430 * 23 22 21 42 42 H 1.07997 * 120.08921 * 180.02562 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.7028 1.3466 0.0006 5 1 1.8840 2.3965 -1.2125 6 1 1.8840 2.3965 1.2126 7 6 2.0084 -1.2114 0.0005 8 1 3.0859 -1.2128 -0.0713 9 6 1.3058 -2.4320 0.0949 10 6 1.8652 -3.5183 0.7964 11 6 1.1787 -4.6931 0.8879 12 6 -0.0696 -4.8249 0.2800 13 7 -0.7622 -6.0296 0.3735 14 6 -0.6751 -6.7715 1.4953 15 8 0.0679 -6.4290 2.3946 16 7 -1.4116 -7.8934 1.6200 17 6 -1.3166 -8.7002 2.8391 18 6 -2.2482 -9.9085 2.7250 19 1 -1.9577 -10.5121 1.8650 20 6 -2.1490 -10.7527 3.9983 21 7 -3.1022 -11.8689 3.9156 22 6 -4.4749 -11.3703 3.7469 23 6 -4.5507 -10.5200 2.4761 24 8 -3.5958 -9.4587 2.5609 25 6 -0.6307 -3.7534 -0.4168 26 17 -2.1878 -3.9268 -1.1644 27 6 0.0424 -2.5700 -0.5120 28 1 -0.4850 0.8400 0.0004 29 1 2.8334 -3.4193 1.2646 30 1 1.6048 -5.5251 1.4288 31 1 -1.3074 -6.3345 -0.3685 32 1 -2.0046 -8.1665 0.9026 33 1 -0.2901 -9.0435 2.9686 34 1 -1.6088 -8.0964 3.6983 35 1 -1.1368 -11.1449 4.0971 36 1 -2.3858 -10.1344 4.8642 37 1 -3.0313 -12.4657 4.7260 38 1 -5.1606 -12.2133 3.6622 39 1 -4.7496 -10.7620 4.6088 40 1 -4.3282 -11.1413 1.6086 41 1 -5.5525 -10.1020 2.3771 42 1 -0.3928 -1.7415 -1.0511 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000415791985.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:22 Heat of formation + Delta-G solvation = -54.242804 kcal Electronic energy + Delta-G solvation = -26301.954011 eV Core-core repulsion = 22307.568151 eV Total energy + Delta-G solvation = -3994.385860 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.17631 -39.56193 -37.64047 -35.46154 -35.24989 -34.78781 -34.22719 -32.99805 -31.69298 -29.39938 -29.00697 -27.80282 -25.61664 -24.66699 -22.98561 -21.73250 -21.02731 -20.83882 -20.04617 -18.10176 -17.42744 -17.19124 -16.87857 -16.64926 -15.59662 -15.25949 -15.23513 -14.98570 -14.79994 -14.45428 -14.20867 -14.15492 -13.76793 -13.44669 -12.93397 -12.89781 -12.53454 -12.45020 -12.21198 -11.85890 -11.63091 -11.59031 -11.39238 -11.09044 -10.91906 -10.91209 -10.54308 -10.27235 -10.11557 -10.00168 -9.70666 -9.54148 -9.27238 -9.02288 -8.96645 -8.84502 -7.49151 -6.93188 -6.66903 -4.41366 2.49949 2.88749 2.95643 3.07917 3.10982 3.14727 3.24662 3.36120 3.64458 3.71901 3.95220 4.41439 4.51731 4.60508 4.62277 4.69603 4.75019 4.82791 4.99489 5.16630 5.28708 5.37063 5.41934 5.49674 5.61152 5.77332 6.24384 6.32051 6.54220 6.57878 6.71794 6.74190 6.82591 6.91495 7.04423 7.15493 7.30557 7.40628 7.74117 7.76521 7.97788 8.16130 8.44217 8.48842 8.80496 8.84982 9.07156 10.23638 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.024505 B = 0.002260 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.334553 B =12387.531895 C =13050.986399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.806 5.806 2 C 0.068 3.932 3 Si 0.917 3.083 4 H -0.261 1.261 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.456 4.456 8 H 0.081 0.919 9 C 0.105 3.895 10 C -0.200 4.200 11 C -0.076 4.076 12 C 0.035 3.965 13 N -0.665 5.665 14 C 0.699 3.301 15 O -0.580 6.580 16 N -0.745 5.745 17 C 0.151 3.849 18 C 0.082 3.918 19 H 0.074 0.926 20 C 0.027 3.973 21 N -0.688 5.688 22 C 0.017 3.983 23 C 0.062 3.938 24 O -0.375 6.375 25 C -0.024 4.024 26 Cl -0.120 7.120 27 C -0.135 4.135 28 H 0.280 0.720 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.395 0.605 32 H 0.397 0.603 33 H 0.081 0.919 34 H 0.072 0.928 35 H 0.091 0.909 36 H 0.046 0.954 37 H 0.348 0.652 38 H 0.086 0.914 39 H 0.041 0.959 40 H 0.059 0.941 41 H 0.099 0.901 42 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.897 -19.259 3.537 21.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.148 4.148 3 Si 0.742 3.258 4 H -0.185 1.185 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.487 4.487 8 H 0.099 0.901 9 C 0.102 3.898 10 C -0.220 4.220 11 C -0.097 4.097 12 C -0.060 4.060 13 N -0.311 5.311 14 C 0.400 3.600 15 O -0.457 6.457 16 N -0.402 5.402 17 C 0.026 3.974 18 C 0.023 3.977 19 H 0.092 0.908 20 C -0.103 4.103 21 N -0.320 5.320 22 C -0.112 4.112 23 C -0.015 4.015 24 O -0.294 6.294 25 C -0.053 4.053 26 Cl -0.092 7.092 27 C -0.156 4.156 28 H 0.091 0.909 29 H 0.121 0.879 30 H 0.138 0.862 31 H 0.229 0.771 32 H 0.230 0.770 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.065 0.935 37 H 0.166 0.834 38 H 0.104 0.896 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.117 0.883 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -7.512 -18.708 3.647 20.487 hybrid contribution -0.738 0.475 0.358 0.948 sum -8.251 -18.233 4.005 20.410 Atomic orbital electron populations 1.69751 1.07293 1.28959 1.37242 1.25920 0.94979 1.01354 0.92498 0.86108 0.80554 0.80661 0.78457 1.18510 1.19934 1.19933 1.19510 0.94890 0.89881 1.44370 0.90130 1.17608 0.91339 0.92408 0.88443 1.20903 1.01412 0.94728 1.04968 1.20423 0.91935 0.98348 0.98949 1.16716 0.93882 0.84548 1.10820 1.42015 1.51439 1.21643 1.16041 1.15914 0.81222 0.80001 0.82864 1.90896 1.42271 1.71665 1.40911 1.44874 1.48020 1.26459 1.20825 1.21078 0.98077 0.90248 0.87999 1.22412 0.83098 0.94688 0.97470 0.90815 1.22513 0.97724 0.92617 0.97438 1.60519 1.04845 1.19684 1.46965 1.22645 0.90654 0.99299 0.98651 1.22659 0.93235 0.89178 0.96413 1.88085 1.15599 1.31825 1.93876 1.20418 0.86147 0.95434 1.03269 1.98247 1.30822 1.97925 1.82234 1.21186 0.97208 0.94438 1.02737 0.90915 0.87922 0.86234 0.77114 0.76973 0.90059 0.90989 0.89068 0.93543 0.83354 0.89585 0.94027 0.92263 0.88312 0.83849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -20.79 10.59 55.54 0.59 -20.20 16 2 C 0.07 1.70 5.42 -17.34 -0.09 1.61 16 3 Si 0.92 18.74 29.56 -169.99 -5.03 13.72 16 4 H -0.26 -5.26 7.11 56.52 0.40 -4.85 16 5 H -0.27 -5.49 7.11 56.52 0.40 -5.08 16 6 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 7 C -0.46 -11.86 9.02 -37.86 -0.34 -12.20 16 8 H 0.08 2.00 7.85 -52.49 -0.41 1.59 16 9 C 0.11 2.76 5.55 -106.80 -0.59 2.17 16 10 C -0.20 -4.92 9.74 -39.25 -0.38 -5.30 16 11 C -0.08 -1.80 8.61 -39.79 -0.34 -2.14 16 12 C 0.03 0.78 6.32 -83.52 -0.53 0.25 16 13 N -0.67 -12.35 5.02 -14.07 -0.07 -12.42 16 14 C 0.70 12.82 8.40 -86.92 -0.73 12.10 16 15 O -0.58 -12.83 13.73 5.30 0.07 -12.76 16 16 N -0.74 -10.09 5.46 -65.22 -0.36 -10.45 16 17 C 0.15 1.76 5.37 -4.04 -0.02 1.73 16 18 C 0.08 0.75 2.89 -26.68 -0.08 0.68 16 19 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 20 C 0.03 0.21 6.05 -3.71 -0.02 0.19 16 21 N -0.69 -4.73 6.92 -113.50 -0.79 -5.52 16 22 C 0.02 0.11 6.76 -3.71 -0.03 0.09 16 23 C 0.06 0.47 7.01 37.20 0.26 0.73 16 24 O -0.38 -3.93 10.23 -35.23 -0.36 -4.29 16 25 C -0.02 -0.56 6.30 -39.72 -0.25 -0.81 16 26 Cl -0.12 -2.38 27.92 -51.86 -1.45 -3.82 16 27 C -0.14 -3.46 8.38 -39.23 -0.33 -3.79 16 28 H 0.28 6.61 8.30 -40.82 -0.34 6.28 16 29 H 0.10 2.36 8.06 -52.49 -0.42 1.94 16 30 H 0.12 2.78 6.18 -52.49 -0.32 2.46 16 31 H 0.39 6.23 8.07 -40.82 -0.33 5.90 16 32 H 0.40 4.50 8.37 -40.82 -0.34 4.16 16 33 H 0.08 0.90 8.14 -51.92 -0.42 0.48 16 34 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 37 H 0.35 1.77 8.90 -39.29 -0.35 1.42 16 38 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.04 0.29 8.14 -51.92 -0.42 -0.13 16 40 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.14 3.84 6.13 -52.49 -0.32 3.52 16 LS Contribution 361.69 15.07 5.45 5.45 Total: -1.00 -30.58 361.69 -10.85 -41.43 By element: Atomic # 1 Polarization: 19.00 SS G_CDS: -5.44 Total: 13.56 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -3.48 Total: -4.71 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -0.62 Total: -48.58 kcal Atomic # 8 Polarization: -16.76 SS G_CDS: -0.29 Total: -17.05 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.72 kcal Atomic # 17 Polarization: -2.38 SS G_CDS: -1.45 Total: -3.82 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -30.58 -10.85 -41.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415791985.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.813 kcal (2) G-P(sol) polarization free energy of solvation -30.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.430 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds