Wall clock time and date at job start Tue Mar 31 2020 22:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30882 * 1 3 3 Si 1.86802 * 119.99433 * 2 1 4 4 H 1.48507 * 109.46859 * 179.97438 * 3 2 1 5 5 H 1.48493 * 109.47295 * 299.99590 * 3 2 1 6 6 H 1.48500 * 109.47187 * 60.00516 * 3 2 1 7 7 C 1.39888 * 120.00503 * 179.97438 * 2 1 3 8 8 H 1.07991 * 120.00222 * 175.59318 * 7 2 1 9 9 C 1.41152 * 119.99719 * 355.59782 * 7 2 1 10 10 C 1.40890 * 120.15710 * 214.75432 * 9 7 2 11 11 C 1.36376 * 119.85014 * 179.75844 * 10 9 7 12 12 C 1.39471 * 120.17820 * 0.51706 * 11 10 9 13 13 N 1.39276 * 119.83863 * 179.75363 * 12 11 10 14 14 C 1.34772 * 119.99642 * 34.73842 * 13 12 11 15 15 O 1.21580 * 120.00298 * 355.74050 * 14 13 12 16 16 N 1.34777 * 119.99680 * 175.75009 * 14 13 12 17 17 C 1.46502 * 119.99923 * 179.97438 * 16 14 13 18 18 C 1.52999 * 109.47241 * 179.97438 * 17 16 14 19 19 H 1.09003 * 109.50765 * 59.91042 * 18 17 16 20 20 C 1.53092 * 109.50877 * 179.97438 * 18 17 16 21 21 N 1.47014 * 109.25979 * 176.78252 * 20 18 17 22 22 C 1.47015 * 110.75171 * 301.38613 * 21 20 18 23 23 C 1.53091 * 109.25824 * 58.61530 * 22 21 20 24 24 O 1.43014 * 109.26075 * 303.14937 * 23 22 21 25 25 C 1.39585 * 120.31960 * 359.48032 * 12 11 10 26 26 Cl 1.73595 * 119.92394 * 180.23448 * 25 12 11 27 27 C 1.36475 * 120.14613 * 0.25536 * 25 12 11 28 28 H 0.96998 * 120.00290 * 359.97438 * 1 2 3 29 29 H 1.08002 * 120.07338 * 0.04108 * 10 9 7 30 30 H 1.07997 * 119.91132 * 180.24639 * 11 10 9 31 31 H 0.96996 * 119.99919 * 214.72598 * 13 12 11 32 32 H 0.97000 * 119.99967 * 359.97438 * 16 14 13 33 33 H 1.09007 * 109.47126 * 299.99461 * 17 16 14 34 34 H 1.09002 * 109.47517 * 59.99213 * 17 16 14 35 35 H 1.09003 * 109.50941 * 296.72123 * 20 18 17 36 36 H 1.09003 * 109.50590 * 56.80528 * 20 18 17 37 37 H 1.00898 * 111.00181 * 177.61332 * 21 20 18 38 38 H 1.08997 * 109.50961 * 178.55210 * 22 21 20 39 39 H 1.09011 * 109.50479 * 298.67892 * 22 21 20 40 40 H 1.08995 * 109.50981 * 63.08611 * 23 22 21 41 41 H 1.09004 * 109.50519 * 183.17430 * 23 22 21 42 42 H 1.07997 * 120.08921 * 180.02562 * 27 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2427 1.6178 0.0000 4 1 3.7028 1.3466 0.0006 5 1 1.8840 2.3965 -1.2125 6 1 1.8840 2.3965 1.2126 7 6 2.0084 -1.2114 0.0005 8 1 3.0859 -1.2128 -0.0713 9 6 1.3058 -2.4320 0.0949 10 6 1.8652 -3.5183 0.7964 11 6 1.1787 -4.6931 0.8879 12 6 -0.0696 -4.8249 0.2800 13 7 -0.7622 -6.0296 0.3735 14 6 -0.6751 -6.7715 1.4953 15 8 0.0679 -6.4290 2.3946 16 7 -1.4116 -7.8934 1.6200 17 6 -1.3166 -8.7002 2.8391 18 6 -2.2482 -9.9085 2.7250 19 1 -1.9577 -10.5121 1.8650 20 6 -2.1490 -10.7527 3.9983 21 7 -3.1022 -11.8689 3.9156 22 6 -4.4749 -11.3703 3.7469 23 6 -4.5507 -10.5200 2.4761 24 8 -3.5958 -9.4587 2.5609 25 6 -0.6307 -3.7534 -0.4168 26 17 -2.1878 -3.9268 -1.1644 27 6 0.0424 -2.5700 -0.5120 28 1 -0.4850 0.8400 0.0004 29 1 2.8334 -3.4193 1.2646 30 1 1.6048 -5.5251 1.4288 31 1 -1.3074 -6.3345 -0.3685 32 1 -2.0046 -8.1665 0.9026 33 1 -0.2901 -9.0435 2.9686 34 1 -1.6088 -8.0964 3.6983 35 1 -1.1368 -11.1449 4.0971 36 1 -2.3858 -10.1344 4.8642 37 1 -3.0313 -12.4657 4.7260 38 1 -5.1606 -12.2133 3.6622 39 1 -4.7496 -10.7620 4.6088 40 1 -4.3282 -11.1413 1.6086 41 1 -5.5525 -10.1020 2.3771 42 1 -0.3928 -1.7415 -1.0511 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000415791985.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:15:21 Heat of formation + Delta-G solvation = -76.344202 kcal Electronic energy + Delta-G solvation = -26302.912399 eV Core-core repulsion = 22307.568151 eV Total energy + Delta-G solvation = -3995.344249 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.51532 -40.47563 -39.36472 -37.20879 -36.43793 -35.87353 -35.48272 -34.74669 -32.61016 -31.27586 -30.72017 -28.68765 -26.96333 -25.82499 -23.94491 -23.37090 -22.66762 -21.88532 -21.31770 -19.59247 -19.16315 -18.50430 -17.64526 -17.60048 -17.20198 -16.60525 -16.40750 -15.94963 -15.88203 -15.68556 -15.46385 -15.25152 -14.87900 -14.68709 -14.59491 -14.36799 -14.12529 -13.83266 -13.43920 -13.22122 -13.14198 -12.79473 -12.66381 -12.41944 -12.28567 -12.26099 -11.93361 -11.75379 -11.58142 -11.54732 -11.28138 -11.04852 -10.76144 -10.71453 -10.12107 -9.55600 -9.36994 -8.76372 -8.52114 -6.36200 0.66793 0.99099 1.40522 1.42401 1.47534 1.57483 1.69317 2.17933 2.25286 2.65694 2.76051 3.06139 3.33717 3.56511 3.81372 3.86718 4.02383 4.06573 4.25783 4.37419 4.41654 4.50611 4.61123 4.66583 4.72416 4.83063 4.93269 4.95322 4.98875 5.02850 5.23201 5.31480 5.42419 5.50533 5.67466 5.77726 5.89424 6.00236 6.15256 6.15559 6.26153 6.30768 6.55383 6.89498 6.92682 7.06399 7.59324 8.40160 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.024505 B = 0.002260 C = 0.002145 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.334553 B =12387.531895 C =13050.986399 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.837 5.837 2 C 0.027 3.973 3 Si 0.990 3.010 4 H -0.257 1.257 5 H -0.265 1.265 6 H -0.271 1.271 7 C -0.487 4.487 8 H 0.082 0.918 9 C 0.076 3.924 10 C -0.208 4.208 11 C -0.083 4.083 12 C 0.046 3.954 13 N -0.659 5.659 14 C 0.698 3.302 15 O -0.619 6.619 16 N -0.724 5.724 17 C 0.150 3.850 18 C 0.090 3.910 19 H 0.083 0.917 20 C 0.029 3.971 21 N -0.690 5.690 22 C 0.018 3.982 23 C 0.056 3.944 24 O -0.400 6.400 25 C -0.031 4.031 26 Cl -0.089 7.089 27 C -0.152 4.152 28 H 0.286 0.714 29 H 0.110 0.890 30 H 0.123 0.877 31 H 0.410 0.590 32 H 0.410 0.590 33 H 0.089 0.911 34 H 0.055 0.945 35 H 0.105 0.895 36 H 0.038 0.962 37 H 0.359 0.641 38 H 0.106 0.894 39 H 0.035 0.965 40 H 0.064 0.936 41 H 0.110 0.890 42 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.703 -20.667 3.520 22.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.465 5.465 2 C -0.186 4.186 3 Si 0.811 3.189 4 H -0.180 1.180 5 H -0.190 1.190 6 H -0.196 1.196 7 C -0.517 4.517 8 H 0.100 0.900 9 C 0.073 3.927 10 C -0.228 4.228 11 C -0.103 4.103 12 C -0.049 4.049 13 N -0.307 5.307 14 C 0.398 3.602 15 O -0.499 6.499 16 N -0.381 5.381 17 C 0.025 3.975 18 C 0.032 3.968 19 H 0.101 0.899 20 C -0.101 4.101 21 N -0.323 5.323 22 C -0.111 4.111 23 C -0.020 4.020 24 O -0.319 6.319 25 C -0.060 4.060 26 Cl -0.060 7.060 27 C -0.172 4.172 28 H 0.097 0.903 29 H 0.128 0.872 30 H 0.141 0.859 31 H 0.247 0.753 32 H 0.246 0.754 33 H 0.107 0.893 34 H 0.073 0.927 35 H 0.123 0.877 36 H 0.057 0.943 37 H 0.179 0.821 38 H 0.124 0.876 39 H 0.053 0.947 40 H 0.082 0.918 41 H 0.128 0.872 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -8.370 -20.198 3.614 22.160 hybrid contribution -0.629 0.724 0.369 1.027 sum -8.999 -19.474 3.983 21.819 Atomic orbital electron populations 1.69825 1.08678 1.30146 1.37828 1.26786 0.95766 1.04505 0.91527 0.85024 0.79215 0.75990 0.78651 1.18020 1.18973 1.19576 1.19751 0.95153 0.90754 1.46079 0.90022 1.17921 0.92198 0.93203 0.89388 1.21055 1.01911 0.94879 1.05001 1.20530 0.92492 0.98128 0.99184 1.16753 0.93520 0.85603 1.09035 1.41867 1.51322 1.20553 1.16970 1.16061 0.81231 0.80753 0.82140 1.90872 1.44052 1.72859 1.42117 1.44743 1.46703 1.24825 1.21802 1.21220 0.99354 0.90576 0.86327 1.22312 0.82363 0.93476 0.98681 0.89935 1.22469 0.98801 0.92676 0.96145 1.60524 1.04805 1.19344 1.47666 1.22667 0.90901 0.99777 0.97803 1.22854 0.93113 0.88894 0.97156 1.88041 1.16283 1.33487 1.94100 1.20436 0.87428 0.94866 1.03275 1.98244 1.28365 1.97802 1.81599 1.21086 0.97655 0.94966 1.03539 0.90337 0.87188 0.85913 0.75349 0.75352 0.89317 0.92706 0.87706 0.94340 0.82092 0.87619 0.94717 0.91756 0.87244 0.85410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -44.00 10.59 21.82 0.23 -43.77 16 2 C 0.03 1.35 5.42 85.23 0.46 1.81 16 3 Si 0.99 38.56 29.56 68.60 2.03 40.59 16 4 H -0.26 -9.69 7.11 99.48 0.71 -8.98 16 5 H -0.26 -9.85 7.11 99.48 0.71 -9.14 16 6 H -0.27 -10.32 7.11 99.48 0.71 -9.61 16 7 C -0.49 -25.98 9.02 23.39 0.21 -25.77 16 8 H 0.08 4.16 7.85 -2.92 -0.02 4.14 16 9 C 0.08 4.10 5.55 -21.28 -0.12 3.98 16 10 C -0.21 -10.49 9.74 22.48 0.22 -10.28 16 11 C -0.08 -3.95 8.61 22.13 0.19 -3.76 16 12 C 0.05 2.07 6.32 38.58 0.24 2.32 16 13 N -0.66 -23.74 5.02 -316.69 -1.59 -25.33 16 14 C 0.70 24.91 8.40 179.06 1.50 26.41 16 15 O -0.62 -27.22 13.73 -3.97 -0.05 -27.28 16 16 N -0.72 -18.53 5.46 -478.53 -2.61 -21.14 16 17 C 0.15 3.30 5.37 86.38 0.46 3.76 16 18 C 0.09 1.50 2.89 30.62 0.09 1.59 16 19 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 20 C 0.03 0.39 6.05 86.31 0.52 0.92 16 21 N -0.69 -7.92 6.92 -512.99 -3.55 -11.47 16 22 C 0.02 0.20 6.76 86.31 0.58 0.78 16 23 C 0.06 0.74 7.01 72.01 0.50 1.25 16 24 O -0.40 -7.69 10.23 -148.98 -1.52 -9.22 16 25 C -0.03 -1.45 6.30 22.18 0.14 -1.31 16 26 Cl -0.09 -3.40 27.92 -2.72 -0.08 -3.48 16 27 C -0.15 -7.95 8.38 22.49 0.19 -7.77 16 28 H 0.29 13.68 8.30 -92.71 -0.77 12.91 16 29 H 0.11 5.20 8.06 -2.91 -0.02 5.18 16 30 H 0.12 5.75 6.18 -2.91 -0.02 5.73 16 31 H 0.41 12.18 8.07 -92.71 -0.75 11.43 16 32 H 0.41 8.43 8.37 -92.71 -0.78 7.65 16 33 H 0.09 1.85 8.14 -2.38 -0.02 1.83 16 34 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 36 H 0.04 0.58 8.14 -2.39 -0.02 0.56 16 37 H 0.36 2.83 8.90 -89.70 -0.80 2.03 16 38 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 39 H 0.03 0.43 8.14 -2.38 -0.02 0.41 16 40 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 41 H 0.11 1.16 8.14 -2.39 -0.02 1.14 16 42 H 0.13 7.05 6.13 -2.91 -0.02 7.04 16 Total: -1.00 -66.47 361.69 -3.17 -69.64 By element: Atomic # 1 Polarization: 38.74 SS G_CDS: -1.23 Total: 37.52 kcal Atomic # 6 Polarization: -11.27 SS G_CDS: 5.20 Total: -6.06 kcal Atomic # 7 Polarization: -94.19 SS G_CDS: -7.52 Total: -101.71 kcal Atomic # 8 Polarization: -34.92 SS G_CDS: -1.58 Total: -36.49 kcal Atomic # 14 Polarization: 38.56 SS G_CDS: 2.03 Total: 40.59 kcal Atomic # 17 Polarization: -3.40 SS G_CDS: -0.08 Total: -3.48 kcal Total: -66.47 -3.17 -69.64 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000415791985.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.704 kcal (2) G-P(sol) polarization free energy of solvation -66.468 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.172 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.344 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds