Wall clock time and date at job start Tue Mar 31 2020 22:32:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99769 * 2 1 4 4 H 1.48499 * 109.46963 * 269.99461 * 3 2 1 5 5 H 1.48496 * 109.47067 * 29.99409 * 3 2 1 6 6 H 1.48493 * 109.47204 * 149.99742 * 3 2 1 7 7 C 1.37878 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99663 * 173.04887 * 7 2 1 9 9 C 1.50693 * 119.99795 * 353.05091 * 7 2 1 10 10 C 1.53005 * 115.55178 * 84.80280 * 9 7 2 11 11 S 1.81394 * 109.47051 * 39.91967 * 10 9 7 12 12 O 1.42103 * 110.54412 * 62.17768 * 11 10 9 13 13 O 1.42098 * 110.54539 * 285.42250 * 11 10 9 14 14 N 1.65606 * 104.45160 * 173.79884 * 11 10 9 15 15 C 1.46502 * 119.99505 * 65.27448 * 14 11 10 16 16 H 1.08997 * 109.47596 * 334.72589 * 15 14 11 17 17 C 1.52994 * 109.47120 * 94.72845 * 15 14 11 18 18 C 1.52996 * 109.47483 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47121 * 300.00217 * 18 17 15 20 20 C 1.53003 * 109.47238 * 59.99694 * 19 18 17 21 21 F 1.39899 * 109.46902 * 59.99936 * 20 19 18 22 22 F 1.39897 * 109.47011 * 179.97438 * 20 19 18 23 23 C 1.52997 * 109.46945 * 300.00230 * 20 19 18 24 24 H 1.08996 * 109.46776 * 299.99417 * 23 20 19 25 25 O 1.42907 * 109.46936 * 180.02562 * 23 20 19 26 26 C 1.52998 * 117.51782 * 230.49925 * 9 7 2 27 27 C 1.52991 * 60.00033 * 107.48365 * 26 9 7 28 28 H 0.96993 * 120.00290 * 5.04255 * 1 2 3 29 29 H 1.09002 * 109.46649 * 279.92321 * 10 9 7 30 30 H 1.08998 * 109.47489 * 159.92592 * 10 9 7 31 31 H 0.96999 * 120.00118 * 245.00984 * 14 11 10 32 32 H 1.08999 * 109.47148 * 300.00202 * 17 15 14 33 33 H 1.09000 * 109.47274 * 59.99934 * 17 15 14 34 34 H 1.09006 * 109.47289 * 60.00037 * 18 17 15 35 35 H 1.09003 * 109.47659 * 180.02562 * 18 17 15 36 36 H 1.09006 * 109.47140 * 179.97438 * 19 18 17 37 37 H 1.08996 * 109.47526 * 299.99638 * 19 18 17 38 38 H 0.96696 * 114.00103 * 59.99486 * 25 23 20 39 39 H 1.09002 * 117.50157 * 214.97771 * 26 9 7 40 40 H 1.09004 * 117.50032 * 359.97438 * 26 9 7 41 41 H 1.08999 * 117.49942 * 252.50878 * 27 26 9 42 42 H 1.08997 * 117.51761 * 107.48241 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0786 -1.1974 -0.1127 9 6 1.2595 -2.4942 0.1590 10 6 0.6812 -3.0846 -1.1286 11 16 1.8672 -2.8601 -2.4827 12 8 3.0753 -3.5560 -2.2079 13 8 1.8833 -1.5057 -2.9121 14 7 1.2019 -3.6842 -3.7557 15 6 -0.0609 -3.2294 -4.3429 16 1 -0.6274 -2.6703 -3.5982 17 6 0.2306 -2.3281 -5.5443 18 6 -1.0882 -1.8536 -6.1579 19 6 -1.9030 -3.0652 -6.6151 20 6 -2.1946 -3.9666 -5.4137 21 9 -2.9220 -3.2490 -4.4581 22 9 -2.9402 -5.0740 -5.8317 23 6 -0.8758 -4.4410 -4.8001 24 1 -0.3091 -5.0000 -5.5446 25 8 -1.1481 -5.2834 -3.6783 26 6 1.7643 -3.4735 1.2206 27 6 0.4644 -2.7000 1.4498 28 1 -0.4850 0.8367 -0.0738 29 1 -0.2513 -2.5766 -1.3745 30 1 0.4890 -4.1481 -0.9865 31 1 1.6502 -4.4657 -4.1151 32 1 0.8115 -1.4652 -5.2186 33 1 0.7970 -2.8872 -6.2890 34 1 -1.6550 -1.2945 -5.4133 35 1 -0.8805 -1.2118 -7.0141 36 1 -2.8428 -2.7271 -7.0519 37 1 -1.3363 -3.6242 -7.3596 38 1 -1.6624 -6.0730 -3.8951 39 1 1.6846 -4.5383 1.0017 40 1 2.6360 -3.1776 1.8044 41 1 0.4805 -1.8951 2.1847 42 1 -0.4709 -3.2556 1.3817 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000416620209.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:21 Heat of formation + Delta-G solvation = -207.401533 kcal Electronic energy + Delta-G solvation = -29942.816062 eV Core-core repulsion = 25493.143261 eV Total energy + Delta-G solvation = -4449.672801 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.20239 -47.17794 -38.94140 -36.66214 -36.16351 -35.92164 -34.89066 -33.89442 -32.00435 -29.43424 -28.69659 -28.10568 -25.41200 -22.93733 -22.79203 -21.14224 -20.55765 -19.62453 -18.66548 -18.09482 -17.76842 -17.11567 -16.68045 -16.33360 -16.15899 -15.54738 -15.04322 -14.84276 -14.66419 -14.24830 -14.17649 -13.77573 -13.60188 -13.52309 -13.48072 -13.24749 -13.00956 -12.99825 -12.44422 -12.11249 -11.83332 -11.75693 -11.58989 -11.26341 -11.11219 -11.04949 -10.97510 -10.93577 -10.86070 -10.58173 -10.48223 -10.29311 -10.14226 -10.05987 -9.71503 -9.26758 -8.85456 -8.48977 -8.05229 -6.11285 -4.25997 1.22894 3.23947 3.35508 3.42110 3.45094 3.51883 3.69063 3.88934 3.97074 4.27098 4.42921 4.64028 4.68020 4.75303 4.86340 4.93070 5.00020 5.12667 5.19200 5.24365 5.35887 5.41636 5.46311 5.56387 5.76903 5.78873 5.99767 6.06463 6.22003 6.23684 6.41368 6.43772 6.69859 6.76120 7.02181 7.21689 7.24447 7.31235 7.44878 7.82577 8.24210 8.82401 9.50636 10.96119 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014629 B = 0.004553 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.522424 B = 6148.672793 C = 6540.838059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.098 3.902 3 Si 0.889 3.111 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.270 1.270 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.050 3.950 10 C -0.555 4.555 11 S 2.624 3.376 12 O -0.976 6.976 13 O -0.941 6.941 14 N -1.123 6.123 15 C 0.167 3.833 16 H 0.102 0.898 17 C -0.143 4.143 18 C -0.122 4.122 19 C -0.160 4.160 20 C 0.258 3.742 21 F -0.185 7.185 22 F -0.202 7.202 23 C 0.068 3.932 24 H 0.090 0.910 25 O -0.538 6.538 26 C -0.205 4.205 27 C -0.144 4.144 28 H 0.264 0.736 29 H 0.125 0.875 30 H 0.099 0.901 31 H 0.408 0.592 32 H 0.103 0.897 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.086 0.914 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.382 0.618 39 H 0.069 0.931 40 H 0.084 0.916 41 H 0.085 0.915 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.623 -8.834 -14.228 17.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.499 5.499 2 C -0.109 4.109 3 Si 0.716 3.284 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.580 4.580 8 H 0.086 0.914 9 C 0.048 3.952 10 C -0.688 4.688 11 S 2.721 3.279 12 O -0.967 6.967 13 O -0.930 6.930 14 N -0.876 5.876 15 C 0.058 3.942 16 H 0.120 0.880 17 C -0.182 4.182 18 C -0.161 4.161 19 C -0.198 4.198 20 C 0.220 3.780 21 F -0.166 7.166 22 F -0.183 7.183 23 C 0.006 3.994 24 H 0.108 0.892 25 O -0.343 6.343 26 C -0.242 4.242 27 C -0.183 4.183 28 H 0.074 0.926 29 H 0.144 0.856 30 H 0.118 0.882 31 H 0.241 0.759 32 H 0.122 0.878 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.104 0.896 36 H 0.110 0.890 37 H 0.114 0.886 38 H 0.230 0.770 39 H 0.087 0.913 40 H 0.102 0.898 41 H 0.103 0.897 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.748 -7.634 -13.807 16.476 hybrid contribution -0.810 -0.370 -0.209 0.915 sum -5.558 -8.003 -14.016 17.071 Atomic orbital electron populations 1.69962 1.06138 1.27388 1.46443 1.24890 0.94694 0.99189 0.92157 0.86615 0.80123 0.82863 0.78843 1.19632 1.21051 1.19480 1.20575 0.93588 0.88795 1.55030 0.91373 1.18187 0.98728 0.93943 0.84343 1.29917 1.16239 1.06680 1.15927 1.04679 0.75264 0.73710 0.74265 1.93483 1.42944 1.75149 1.85103 1.93525 1.86159 1.33828 1.79520 1.56107 1.33701 1.45852 1.51977 1.20580 0.84418 0.91867 0.97311 0.87977 1.22215 0.97951 1.01230 0.96775 1.21562 0.95869 0.96407 1.02214 1.22599 1.03503 0.97753 0.95932 1.21980 0.86997 0.80888 0.88101 1.93060 1.79578 1.78065 1.65895 1.92994 1.79341 1.55241 1.90746 1.23134 0.92202 0.93930 0.90139 0.89224 1.86673 1.76714 1.38088 1.32808 1.23121 0.98664 0.95633 1.06795 1.22518 0.92425 1.01071 1.02261 0.92590 0.85627 0.88208 0.75944 0.87836 0.90828 0.89985 0.89581 0.88990 0.88603 0.76989 0.91268 0.89753 0.89690 0.91603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.09 12.96 55.43 0.72 -23.37 16 2 C 0.10 2.71 5.39 -17.82 -0.10 2.62 16 3 Si 0.89 21.81 29.55 -169.99 -5.02 16.79 16 4 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.54 -15.02 6.89 -34.44 -0.24 -15.26 16 8 H 0.07 1.93 7.82 -52.49 -0.41 1.52 16 9 C 0.05 1.25 1.64 -155.66 -0.26 1.00 16 10 C -0.55 -12.13 6.02 37.16 0.22 -11.90 16 11 S 2.62 55.27 4.55 -107.50 -0.49 54.78 16 12 O -0.98 -22.75 18.08 -57.54 -1.04 -23.79 16 13 O -0.94 -22.61 16.21 -57.54 -0.93 -23.54 16 14 N -1.12 -17.06 5.23 -4.89 -0.03 -17.08 16 15 C 0.17 2.28 2.12 -67.93 -0.14 2.14 16 16 H 0.10 1.62 6.97 -51.93 -0.36 1.26 16 17 C -0.14 -1.66 5.52 -26.74 -0.15 -1.80 16 18 C -0.12 -1.16 5.80 -26.73 -0.16 -1.31 16 19 C -0.16 -1.31 5.45 -26.73 -0.15 -1.46 16 20 C 0.26 2.77 1.79 -26.73 -0.05 2.72 16 21 F -0.19 -2.56 15.97 2.25 0.04 -2.53 16 22 F -0.20 -2.14 16.68 2.25 0.04 -2.10 16 23 C 0.07 0.74 2.63 -26.73 -0.07 0.67 16 24 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 25 O -0.54 -6.35 13.13 -35.23 -0.46 -6.81 16 26 C -0.20 -4.59 9.88 -26.74 -0.26 -4.85 16 27 C -0.14 -3.37 9.49 -26.74 -0.25 -3.63 16 28 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 29 H 0.13 2.81 7.65 -51.92 -0.40 2.41 16 30 H 0.10 1.91 7.95 -51.93 -0.41 1.50 16 31 H 0.41 5.14 8.80 -34.48 -0.30 4.83 16 32 H 0.10 1.45 7.39 -51.93 -0.38 1.07 16 33 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.89 7.80 -51.93 -0.41 0.49 16 35 H 0.09 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.38 3.01 8.73 45.56 0.40 3.40 16 39 H 0.07 1.38 8.08 -51.93 -0.42 0.96 16 40 H 0.08 1.86 8.14 -51.93 -0.42 1.43 16 41 H 0.08 2.09 8.14 -51.93 -0.42 1.66 16 42 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 360.95 15.07 5.44 5.44 Total: -1.00 -34.10 360.95 -8.55 -42.65 By element: Atomic # 1 Polarization: 15.85 SS G_CDS: -5.21 Total: 10.63 kcal Atomic # 6 Polarization: -29.48 SS G_CDS: -1.59 Total: -31.08 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 0.69 Total: -40.45 kcal Atomic # 8 Polarization: -51.71 SS G_CDS: -2.44 Total: -54.14 kcal Atomic # 9 Polarization: -4.70 SS G_CDS: 0.07 Total: -4.63 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 55.27 SS G_CDS: -0.49 Total: 54.78 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -34.10 -8.55 -42.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416620209.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.748 kcal (2) G-P(sol) polarization free energy of solvation -34.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -198.852 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.654 kcal (6) G-S(sol) free energy of system = (1) + (5) -207.402 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds