Wall clock time and date at job start Tue Mar 31 2020 22:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86802 * 119.99769 * 2 1 4 4 H 1.48499 * 109.46963 * 269.99461 * 3 2 1 5 5 H 1.48496 * 109.47067 * 29.99409 * 3 2 1 6 6 H 1.48493 * 109.47204 * 149.99742 * 3 2 1 7 7 C 1.37878 * 120.00222 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99663 * 173.04887 * 7 2 1 9 9 C 1.50693 * 119.99795 * 353.05091 * 7 2 1 10 10 C 1.53005 * 115.55178 * 84.80280 * 9 7 2 11 11 S 1.81394 * 109.47051 * 39.91967 * 10 9 7 12 12 O 1.42103 * 110.54412 * 62.17768 * 11 10 9 13 13 O 1.42098 * 110.54539 * 285.42250 * 11 10 9 14 14 N 1.65606 * 104.45160 * 173.79884 * 11 10 9 15 15 C 1.46502 * 119.99505 * 65.27448 * 14 11 10 16 16 H 1.08997 * 109.47596 * 334.72589 * 15 14 11 17 17 C 1.52994 * 109.47120 * 94.72845 * 15 14 11 18 18 C 1.52996 * 109.47483 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.47121 * 300.00217 * 18 17 15 20 20 C 1.53003 * 109.47238 * 59.99694 * 19 18 17 21 21 F 1.39899 * 109.46902 * 59.99936 * 20 19 18 22 22 F 1.39897 * 109.47011 * 179.97438 * 20 19 18 23 23 C 1.52997 * 109.46945 * 300.00230 * 20 19 18 24 24 H 1.08996 * 109.46776 * 299.99417 * 23 20 19 25 25 O 1.42907 * 109.46936 * 180.02562 * 23 20 19 26 26 C 1.52998 * 117.51782 * 230.49925 * 9 7 2 27 27 C 1.52991 * 60.00033 * 107.48365 * 26 9 7 28 28 H 0.96993 * 120.00290 * 5.04255 * 1 2 3 29 29 H 1.09002 * 109.46649 * 279.92321 * 10 9 7 30 30 H 1.08998 * 109.47489 * 159.92592 * 10 9 7 31 31 H 0.96999 * 120.00118 * 245.00984 * 14 11 10 32 32 H 1.08999 * 109.47148 * 300.00202 * 17 15 14 33 33 H 1.09000 * 109.47274 * 59.99934 * 17 15 14 34 34 H 1.09006 * 109.47289 * 60.00037 * 18 17 15 35 35 H 1.09003 * 109.47659 * 180.02562 * 18 17 15 36 36 H 1.09006 * 109.47140 * 179.97438 * 19 18 17 37 37 H 1.08996 * 109.47526 * 299.99638 * 19 18 17 38 38 H 0.96696 * 114.00103 * 59.99486 * 25 23 20 39 39 H 1.09002 * 117.50157 * 214.97771 * 26 9 7 40 40 H 1.09004 * 117.50032 * 359.97438 * 26 9 7 41 41 H 1.08999 * 117.49942 * 252.50878 * 27 26 9 42 42 H 1.08997 * 117.51761 * 107.48241 * 27 26 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6527 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0786 -1.1974 -0.1127 9 6 1.2595 -2.4942 0.1590 10 6 0.6812 -3.0846 -1.1286 11 16 1.8672 -2.8601 -2.4827 12 8 3.0753 -3.5560 -2.2079 13 8 1.8833 -1.5057 -2.9121 14 7 1.2019 -3.6842 -3.7557 15 6 -0.0609 -3.2294 -4.3429 16 1 -0.6274 -2.6703 -3.5982 17 6 0.2306 -2.3281 -5.5443 18 6 -1.0882 -1.8536 -6.1579 19 6 -1.9030 -3.0652 -6.6151 20 6 -2.1946 -3.9666 -5.4137 21 9 -2.9220 -3.2490 -4.4581 22 9 -2.9402 -5.0740 -5.8317 23 6 -0.8758 -4.4410 -4.8001 24 1 -0.3091 -5.0000 -5.5446 25 8 -1.1481 -5.2834 -3.6783 26 6 1.7643 -3.4735 1.2206 27 6 0.4644 -2.7000 1.4498 28 1 -0.4850 0.8367 -0.0738 29 1 -0.2513 -2.5766 -1.3745 30 1 0.4890 -4.1481 -0.9865 31 1 1.6502 -4.4657 -4.1151 32 1 0.8115 -1.4652 -5.2186 33 1 0.7970 -2.8872 -6.2890 34 1 -1.6550 -1.2945 -5.4133 35 1 -0.8805 -1.2118 -7.0141 36 1 -2.8428 -2.7271 -7.0519 37 1 -1.3363 -3.6242 -7.3596 38 1 -1.6624 -6.0730 -3.8951 39 1 1.6846 -4.5383 1.0017 40 1 2.6360 -3.1776 1.8044 41 1 0.4805 -1.8951 2.1847 42 1 -0.4709 -3.2556 1.3817 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000416620209.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:20 Heat of formation + Delta-G solvation = -234.086026 kcal Electronic energy + Delta-G solvation = -29943.973188 eV Core-core repulsion = 25493.143261 eV Total energy + Delta-G solvation = -4450.829927 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.06270 -48.06283 -39.87567 -38.53811 -37.84340 -36.89738 -36.64499 -34.98480 -34.09126 -30.26728 -29.87573 -29.67604 -27.49279 -23.81320 -23.67552 -22.97905 -21.68574 -21.22518 -20.26001 -18.99040 -18.75433 -18.57939 -18.19533 -17.53622 -17.19014 -16.85860 -16.74723 -16.58047 -16.01217 -15.70812 -15.38654 -15.04744 -14.87047 -14.58353 -14.49557 -14.37309 -14.09027 -13.96017 -13.86191 -13.73017 -13.28919 -13.07801 -13.01778 -12.91818 -12.82194 -12.75271 -12.64856 -12.40944 -12.10890 -12.05291 -11.91319 -11.83975 -11.58226 -11.56039 -10.97963 -10.87908 -10.59162 -10.45953 -9.90676 -8.21299 -6.39922 -0.42998 1.36694 1.41909 1.47418 2.00336 2.40132 2.64300 2.78815 2.99747 3.06773 3.08655 3.19113 3.32821 3.49389 3.56914 3.85701 3.87987 3.96503 4.05809 4.09635 4.20219 4.32131 4.44405 4.58305 4.59924 4.62789 4.67194 4.83137 4.85592 4.96519 4.99541 5.04772 5.17801 5.26031 5.34110 5.39019 5.59015 5.68925 6.16659 6.21168 6.59805 6.69481 7.37780 8.85604 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.014629 B = 0.004553 C = 0.004280 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.522424 B = 6148.672793 C = 6540.838059 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.059 3.941 3 Si 0.928 3.072 4 H -0.276 1.276 5 H -0.271 1.271 6 H -0.265 1.265 7 C -0.556 4.556 8 H 0.050 0.950 9 C 0.014 3.986 10 C -0.553 4.553 11 S 2.640 3.360 12 O -1.002 7.002 13 O -0.978 6.978 14 N -1.104 6.104 15 C 0.157 3.843 16 H 0.071 0.929 17 C -0.143 4.143 18 C -0.120 4.120 19 C -0.153 4.153 20 C 0.251 3.749 21 F -0.210 7.210 22 F -0.199 7.199 23 C 0.072 3.928 24 H 0.129 0.871 25 O -0.560 6.560 26 C -0.189 4.189 27 C -0.143 4.143 28 H 0.266 0.734 29 H 0.113 0.887 30 H 0.126 0.874 31 H 0.424 0.576 32 H 0.072 0.928 33 H 0.106 0.894 34 H 0.057 0.943 35 H 0.111 0.889 36 H 0.104 0.896 37 H 0.129 0.871 38 H 0.399 0.601 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.066 0.934 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.902 -10.362 -16.143 20.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.519 5.519 2 C -0.146 4.146 3 Si 0.753 3.247 4 H -0.202 1.202 5 H -0.195 1.195 6 H -0.190 1.190 7 C -0.594 4.594 8 H 0.068 0.932 9 C 0.012 3.988 10 C -0.685 4.685 11 S 2.737 3.263 12 O -0.992 6.992 13 O -0.967 6.967 14 N -0.862 5.862 15 C 0.048 3.952 16 H 0.089 0.911 17 C -0.182 4.182 18 C -0.158 4.158 19 C -0.190 4.190 20 C 0.214 3.786 21 F -0.191 7.191 22 F -0.180 7.180 23 C 0.010 3.990 24 H 0.147 0.853 25 O -0.368 6.368 26 C -0.226 4.226 27 C -0.182 4.182 28 H 0.075 0.925 29 H 0.132 0.868 30 H 0.144 0.856 31 H 0.260 0.740 32 H 0.090 0.910 33 H 0.125 0.875 34 H 0.076 0.924 35 H 0.129 0.871 36 H 0.122 0.878 37 H 0.147 0.853 38 H 0.249 0.751 39 H 0.116 0.884 40 H 0.101 0.899 41 H 0.084 0.916 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.028 -9.179 -15.710 18.877 hybrid contribution -0.748 0.036 0.374 0.837 sum -5.777 -9.143 -15.336 18.766 Atomic orbital electron populations 1.70012 1.06790 1.27939 1.47155 1.25463 0.95457 1.01538 0.92173 0.86002 0.79658 0.80460 0.78575 1.20203 1.19548 1.18967 1.20712 0.92993 0.90594 1.55066 0.93174 1.18361 1.00141 0.94175 0.86096 1.29831 1.15667 1.07908 1.15111 1.03858 0.74744 0.73113 0.74618 1.93438 1.44518 1.75391 1.85858 1.93479 1.86667 1.36417 1.80165 1.55466 1.34440 1.46044 1.50282 1.20780 0.83492 0.93541 0.97338 0.91105 1.22209 0.99215 1.00075 0.96696 1.21545 0.94568 0.97317 1.02354 1.22639 1.04334 0.96809 0.95246 1.22287 0.86451 0.81226 0.88619 1.93017 1.80214 1.78716 1.67146 1.92997 1.79270 1.55157 1.90621 1.23148 0.92293 0.92952 0.90571 0.85339 1.86620 1.77253 1.39118 1.33811 1.23198 0.97879 0.96746 1.04808 1.22447 0.93690 1.01032 1.01044 0.92462 0.86850 0.85562 0.73985 0.90965 0.87520 0.92399 0.87087 0.87791 0.85263 0.75054 0.88367 0.89873 0.91572 0.90048 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -50.24 12.96 21.45 0.28 -49.96 16 2 C 0.06 3.31 5.39 84.65 0.46 3.77 16 3 Si 0.93 45.18 29.55 68.60 2.03 47.20 16 4 H -0.28 -13.61 7.11 99.48 0.71 -12.90 16 5 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 6 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 7 C -0.56 -31.45 6.89 25.60 0.18 -31.27 16 8 H 0.05 2.93 7.82 -2.91 -0.02 2.91 16 9 C 0.01 0.71 1.64 -52.93 -0.09 0.63 16 10 C -0.55 -24.21 6.02 71.98 0.43 -23.78 16 11 S 2.64 111.87 4.55 -56.49 -0.26 111.62 16 12 O -1.00 -46.52 18.08 -127.65 -2.31 -48.82 16 13 O -0.98 -48.38 16.21 -127.65 -2.07 -50.45 16 14 N -1.10 -32.30 5.23 -169.40 -0.89 -33.18 16 15 C 0.16 4.12 2.12 44.99 0.10 4.22 16 16 H 0.07 2.32 6.97 -2.39 -0.02 2.30 16 17 C -0.14 -3.11 5.52 30.59 0.17 -2.94 16 18 C -0.12 -2.05 5.80 30.59 0.18 -1.87 16 19 C -0.15 -2.00 5.45 30.59 0.17 -1.83 16 20 C 0.25 4.83 1.79 30.59 0.05 4.88 16 21 F -0.21 -5.73 15.97 44.97 0.72 -5.02 16 22 F -0.20 -3.67 16.68 44.97 0.75 -2.92 16 23 C 0.07 1.39 2.63 30.59 0.08 1.47 16 24 H 0.13 1.49 8.14 -2.39 -0.02 1.47 16 25 O -0.56 -12.09 13.13 -148.98 -1.96 -14.04 16 26 C -0.19 -8.29 9.88 30.59 0.30 -7.99 16 27 C -0.14 -6.70 9.49 30.59 0.29 -6.41 16 28 H 0.27 14.40 8.32 -92.71 -0.77 13.63 16 29 H 0.11 5.22 7.65 -2.39 -0.02 5.20 16 30 H 0.13 4.69 7.95 -2.39 -0.02 4.67 16 31 H 0.42 9.73 8.80 -96.74 -0.85 8.87 16 32 H 0.07 2.05 7.39 -2.39 -0.02 2.03 16 33 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 34 H 0.06 1.27 7.80 -2.38 -0.02 1.25 16 35 H 0.11 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.10 1.17 8.14 -2.38 -0.02 1.15 16 37 H 0.13 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.40 5.33 8.73 -74.06 -0.65 4.69 16 39 H 0.10 3.69 8.08 -2.39 -0.02 3.67 16 40 H 0.08 3.61 8.14 -2.39 -0.02 3.60 16 41 H 0.07 3.30 8.14 -2.39 -0.02 3.28 16 42 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 Total: -1.00 -75.43 360.95 -1.82 -77.25 By element: Atomic # 1 Polarization: 29.88 SS G_CDS: -0.44 Total: 29.45 kcal Atomic # 6 Polarization: -63.45 SS G_CDS: 2.32 Total: -61.13 kcal Atomic # 7 Polarization: -82.54 SS G_CDS: -0.61 Total: -83.14 kcal Atomic # 8 Polarization: -106.98 SS G_CDS: -6.33 Total: -113.31 kcal Atomic # 9 Polarization: -9.40 SS G_CDS: 1.47 Total: -7.93 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.20 kcal Atomic # 16 Polarization: 111.87 SS G_CDS: -0.26 Total: 111.62 kcal Total: -75.43 -1.82 -77.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000416620209.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -156.839 kcal (2) G-P(sol) polarization free energy of solvation -75.426 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -232.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds