Wall clock time and date at job start Tue Mar 31 2020 22:26:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00384 * 2 1 4 4 H 1.48490 * 109.47394 * 269.99838 * 3 2 1 5 5 H 1.48500 * 109.46856 * 30.00062 * 3 2 1 6 6 H 1.48499 * 109.47177 * 149.99778 * 3 2 1 7 7 C 1.37876 * 119.99622 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00417 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00381 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47267 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47012 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47468 * 54.99879 * 11 10 9 13 13 N 1.46904 * 109.47092 * 294.99749 * 11 10 9 14 14 C 1.50703 * 109.47098 * 175.00031 * 11 10 9 15 15 O 1.21281 * 120.00069 * 100.00005 * 14 11 10 16 16 N 1.34779 * 119.99727 * 279.99359 * 14 11 10 17 17 C 1.46496 * 119.99502 * 179.72160 * 16 14 11 18 18 C 1.50703 * 109.47128 * 180.27806 * 17 16 14 19 19 O 1.21294 * 119.99698 * 0.02562 * 18 17 16 20 20 N 1.34769 * 120.00467 * 180.02562 * 18 17 16 21 21 C 1.39969 * 120.00329 * 175.37883 * 20 18 17 22 22 C 1.38860 * 120.06059 * 214.80657 * 21 20 18 23 23 C 1.38112 * 119.94355 * 179.79059 * 22 21 20 24 24 C 1.38376 * 120.05802 * 0.48679 * 23 22 21 25 25 Cl 1.73603 * 119.94247 * 179.72345 * 24 23 22 26 26 C 1.38383 * 120.11429 * 359.74791 * 24 23 22 27 27 C 1.38108 * 120.05920 * 0.02562 * 26 24 23 28 28 H 0.97001 * 119.99675 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.46621 * 59.99685 * 9 7 2 30 30 H 1.09000 * 109.47007 * 300.00424 * 9 7 2 31 31 H 1.08997 * 109.47082 * 60.00446 * 10 9 7 32 32 H 1.09005 * 109.47022 * 299.99981 * 10 9 7 33 33 H 1.00894 * 110.99995 * 299.99965 * 13 11 10 34 34 H 1.00906 * 110.99441 * 63.95407 * 13 11 10 35 35 H 0.96999 * 120.00108 * 0.02562 * 16 14 11 36 36 H 1.08991 * 109.47854 * 300.28006 * 17 16 14 37 37 H 1.09006 * 109.46895 * 60.28589 * 17 16 14 38 38 H 0.97003 * 119.99626 * 355.37378 * 20 18 17 39 39 H 1.08004 * 120.02443 * 359.97438 * 22 21 20 40 40 H 1.08004 * 119.96946 * 180.23450 * 23 22 21 41 41 H 1.08005 * 119.97088 * 179.97438 * 26 24 23 42 42 H 1.08000 * 120.03083 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0018 11 6 1.4801 -4.9871 0.0012 12 1 0.7889 -5.0072 -0.8414 13 7 0.7270 -5.1183 1.2556 14 6 2.4548 -6.1299 -0.1214 15 8 2.7855 -6.7533 0.8650 16 7 2.9589 -6.4593 -1.3272 17 6 3.9111 -7.5663 -1.4454 18 6 4.3234 -7.7226 -2.8865 19 8 3.8670 -6.9818 -3.7315 20 7 5.1990 -8.6854 -3.2363 21 6 5.5081 -8.8938 -4.5855 22 6 5.7614 -10.1774 -5.0508 23 6 6.0619 -10.3807 -6.3834 24 6 6.1206 -9.3056 -7.2526 25 17 6.5057 -9.5638 -8.9256 26 6 5.8734 -8.0248 -6.7904 27 6 5.5679 -7.8165 -5.4597 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6239 -2.5567 0.8903 31 1 2.8710 -3.6041 0.8923 32 1 2.8725 -3.6048 -0.8877 33 1 1.3459 -5.1025 2.0523 34 1 0.0221 -4.4002 1.3310 35 1 2.6946 -5.9605 -2.1160 36 1 4.7904 -7.3559 -0.8368 37 1 3.4419 -8.4875 -1.0998 38 1 5.6152 -9.2340 -2.5531 39 1 5.7205 -11.0163 -4.3718 40 1 6.2553 -11.3793 -6.7466 41 1 5.9203 -7.1873 -7.4707 42 1 5.3755 -6.8168 -5.0994 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000424102535.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:14 Heat of formation + Delta-G solvation = -61.267888 kcal Electronic energy + Delta-G solvation = -25423.062911 eV Core-core repulsion = 21428.372421 eV Total energy + Delta-G solvation = -3994.690490 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.17266 -39.74391 -38.91479 -36.90863 -35.59077 -35.21001 -34.49119 -32.85346 -31.55380 -30.45577 -29.89741 -28.29632 -26.09946 -23.96035 -23.54919 -22.78580 -21.02226 -20.75573 -19.95121 -18.59828 -17.86101 -17.17939 -16.82735 -16.39728 -16.16516 -16.09207 -15.46136 -14.91084 -14.73134 -14.57343 -14.42742 -14.08181 -13.93746 -13.91269 -13.65417 -13.28218 -13.04881 -12.81951 -12.68052 -12.30578 -12.15510 -11.95298 -11.70026 -11.28809 -11.09401 -10.93904 -10.69834 -10.68745 -10.36695 -9.99772 -9.98625 -9.51328 -9.34295 -9.23278 -9.21266 -8.59286 -8.43854 -8.22584 -6.08297 -4.11324 0.57111 0.82427 1.73688 1.98374 2.28479 2.81459 3.17960 3.23518 3.27527 3.34197 3.37310 4.03458 4.32481 4.39649 4.40600 4.75608 4.87352 4.89202 4.95862 4.98252 5.12747 5.17813 5.27935 5.40048 5.50947 5.57058 5.73059 5.74109 5.79718 5.88009 6.23895 6.28373 6.37290 6.50018 6.74823 6.86603 7.37146 7.48245 7.51226 7.58548 7.64655 7.87560 7.89203 8.30218 8.33379 8.94450 9.53490 11.02604 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012762 B = 0.001939 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.543593 B =14437.090870 C =16195.209421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.893 3.107 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.524 4.524 8 H 0.054 0.946 9 C 0.024 3.976 10 C -0.138 4.138 11 C 0.077 3.923 12 H 0.099 0.901 13 N -0.830 5.830 14 C 0.531 3.469 15 O -0.538 6.538 16 N -0.725 5.725 17 C 0.105 3.895 18 C 0.511 3.489 19 O -0.508 6.508 20 N -0.671 5.671 21 C 0.150 3.850 22 C -0.132 4.132 23 C -0.092 4.092 24 C -0.050 4.050 25 Cl -0.072 7.072 26 C -0.090 4.090 27 C -0.108 4.108 28 H 0.262 0.738 29 H 0.019 0.981 30 H 0.018 0.982 31 H 0.055 0.945 32 H 0.057 0.943 33 H 0.345 0.655 34 H 0.356 0.644 35 H 0.414 0.586 36 H 0.102 0.898 37 H 0.102 0.898 38 H 0.416 0.584 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.138 0.862 42 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.093 -23.382 -11.775 29.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.144 4.144 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.013 4.013 10 C -0.178 4.178 11 C -0.039 4.039 12 H 0.117 0.883 13 N -0.363 5.363 14 C 0.318 3.682 15 O -0.414 6.414 16 N -0.383 5.383 17 C -0.023 4.023 18 C 0.299 3.701 19 O -0.381 6.381 20 N -0.317 5.317 21 C 0.056 3.944 22 C -0.153 4.153 23 C -0.111 4.111 24 C -0.078 4.078 25 Cl -0.043 7.043 26 C -0.109 4.109 27 C -0.128 4.128 28 H 0.071 0.929 29 H 0.038 0.962 30 H 0.036 0.964 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.159 0.841 34 H 0.171 0.829 35 H 0.252 0.748 36 H 0.120 0.880 37 H 0.120 0.880 38 H 0.253 0.747 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.156 0.844 42 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges 12.589 -23.891 -12.016 29.558 hybrid contribution 1.011 1.778 -0.072 2.047 sum 13.601 -22.113 -12.088 28.637 Atomic orbital electron populations 1.69949 1.06003 1.26778 1.50421 1.25016 0.94886 0.99319 0.95147 0.86575 0.79825 0.83353 0.78155 1.20603 1.21159 1.19916 1.21172 0.93011 0.90880 1.51113 0.92724 1.19108 0.93723 0.91079 0.97424 1.22393 0.99936 0.93875 1.01562 1.21453 0.94618 0.91988 0.95793 0.88306 1.58745 1.18433 1.55984 1.03110 1.20951 0.80957 0.84458 0.81850 1.90638 1.60325 1.53434 1.37007 1.45761 1.46333 1.34727 1.11456 1.20945 0.95841 0.93597 0.91872 1.20898 0.77932 0.79729 0.91566 1.90751 1.53661 1.42150 1.51586 1.43410 1.44380 1.37384 1.06572 1.17812 0.98924 0.93552 0.84106 1.20863 1.03533 0.95265 0.95634 1.20833 0.99665 0.98482 0.92150 1.20950 1.05746 0.95141 0.85917 1.98377 1.92704 1.96952 1.16289 1.21029 0.98411 0.95673 0.95804 1.21339 0.99127 0.99861 0.92488 0.92881 0.96237 0.96355 0.92621 0.92414 0.84145 0.82884 0.74793 0.88045 0.87989 0.74688 0.84562 0.84481 0.84401 0.83170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.04 13.29 55.43 0.74 -25.31 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.34 29.54 -169.99 -5.02 16.32 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 8 H 0.05 1.47 7.74 -52.48 -0.41 1.07 16 9 C 0.02 0.58 4.74 -27.88 -0.13 0.44 16 10 C -0.14 -2.68 4.78 -26.73 -0.13 -2.81 16 11 C 0.08 1.28 3.21 -68.86 -0.22 1.06 16 12 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 13 N -0.83 -13.96 8.94 -5.65 -0.05 -14.01 16 14 C 0.53 8.35 7.08 -10.98 -0.08 8.27 16 15 O -0.54 -9.69 16.25 5.56 0.09 -9.60 16 16 N -0.73 -9.14 5.53 -61.47 -0.34 -9.47 16 17 C 0.11 0.97 6.16 -5.19 -0.03 0.93 16 18 C 0.51 4.67 7.74 -10.99 -0.09 4.58 16 19 O -0.51 -6.36 13.10 5.55 0.07 -6.28 16 20 N -0.67 -4.29 5.34 -9.85 -0.05 -4.34 16 21 C 0.15 1.18 6.30 -83.68 -0.53 0.65 16 22 C -0.13 -0.81 9.97 -39.40 -0.39 -1.20 16 23 C -0.09 -0.60 9.82 -39.58 -0.39 -0.99 16 24 C -0.05 -0.40 6.32 -39.48 -0.25 -0.65 16 25 Cl -0.07 -0.56 28.95 -51.86 -1.50 -2.06 16 26 C -0.09 -0.76 9.82 -39.58 -0.39 -1.15 16 27 C -0.11 -1.00 8.70 -39.40 -0.34 -1.34 16 28 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.02 0.46 6.87 -51.93 -0.36 0.10 16 31 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 32 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 33 H 0.35 5.82 8.58 -39.29 -0.34 5.49 16 34 H 0.36 6.03 7.55 -39.29 -0.30 5.73 16 35 H 0.41 5.21 7.44 -40.82 -0.30 4.91 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.42 1.22 8.82 -40.82 -0.36 0.86 16 39 H 0.14 0.47 8.06 -52.48 -0.42 0.05 16 40 H 0.14 0.64 8.06 -52.48 -0.42 0.22 16 41 H 0.14 1.01 8.06 -52.48 -0.42 0.59 16 42 H 0.15 1.59 6.22 -52.49 -0.33 1.26 16 LS Contribution 376.01 15.07 5.67 5.67 Total: -1.00 -33.41 376.01 -9.10 -42.51 By element: Atomic # 1 Polarization: 17.25 SS G_CDS: -5.33 Total: 11.93 kcal Atomic # 6 Polarization: -1.97 SS G_CDS: -3.38 Total: -5.35 kcal Atomic # 7 Polarization: -53.43 SS G_CDS: 0.29 Total: -53.13 kcal Atomic # 8 Polarization: -16.04 SS G_CDS: 0.16 Total: -15.88 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -1.50 Total: -2.06 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.41 -9.10 -42.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424102535.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.759 kcal (2) G-P(sol) polarization free energy of solvation -33.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.508 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds