Wall clock time and date at job start Tue Mar 31 2020 22:26:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86798 * 120.00384 * 2 1 4 4 H 1.48490 * 109.47394 * 269.99838 * 3 2 1 5 5 H 1.48500 * 109.46856 * 30.00062 * 3 2 1 6 6 H 1.48499 * 109.47177 * 149.99778 * 3 2 1 7 7 C 1.37876 * 119.99622 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00417 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00381 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47267 * 180.02562 * 9 7 2 11 11 C 1.52998 * 109.47012 * 180.02562 * 10 9 7 12 12 H 1.08998 * 109.47468 * 54.99879 * 11 10 9 13 13 N 1.46904 * 109.47092 * 294.99749 * 11 10 9 14 14 C 1.50703 * 109.47098 * 175.00031 * 11 10 9 15 15 O 1.21281 * 120.00069 * 100.00005 * 14 11 10 16 16 N 1.34779 * 119.99727 * 279.99359 * 14 11 10 17 17 C 1.46496 * 119.99502 * 179.72160 * 16 14 11 18 18 C 1.50703 * 109.47128 * 180.27806 * 17 16 14 19 19 O 1.21294 * 119.99698 * 0.02562 * 18 17 16 20 20 N 1.34769 * 120.00467 * 180.02562 * 18 17 16 21 21 C 1.39969 * 120.00329 * 175.37883 * 20 18 17 22 22 C 1.38860 * 120.06059 * 214.80657 * 21 20 18 23 23 C 1.38112 * 119.94355 * 179.79059 * 22 21 20 24 24 C 1.38376 * 120.05802 * 0.48679 * 23 22 21 25 25 Cl 1.73603 * 119.94247 * 179.72345 * 24 23 22 26 26 C 1.38383 * 120.11429 * 359.74791 * 24 23 22 27 27 C 1.38108 * 120.05920 * 0.02562 * 26 24 23 28 28 H 0.97001 * 119.99675 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.46621 * 59.99685 * 9 7 2 30 30 H 1.09000 * 109.47007 * 300.00424 * 9 7 2 31 31 H 1.08997 * 109.47082 * 60.00446 * 10 9 7 32 32 H 1.09005 * 109.47022 * 299.99981 * 10 9 7 33 33 H 1.00894 * 110.99995 * 299.99965 * 13 11 10 34 34 H 1.00906 * 110.99441 * 63.95407 * 13 11 10 35 35 H 0.96999 * 120.00108 * 0.02562 * 16 14 11 36 36 H 1.08991 * 109.47854 * 300.28006 * 17 16 14 37 37 H 1.09006 * 109.46895 * 60.28589 * 17 16 14 38 38 H 0.97003 * 119.99626 * 355.37378 * 20 18 17 39 39 H 1.08004 * 120.02443 * 359.97438 * 22 21 20 40 40 H 1.08004 * 119.96946 * 180.23450 * 23 22 21 41 41 H 1.08005 * 119.97088 * 179.97438 * 26 24 23 42 42 H 1.08000 * 120.03083 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0044 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0018 11 6 1.4801 -4.9871 0.0012 12 1 0.7889 -5.0072 -0.8414 13 7 0.7270 -5.1183 1.2556 14 6 2.4548 -6.1299 -0.1214 15 8 2.7855 -6.7533 0.8650 16 7 2.9589 -6.4593 -1.3272 17 6 3.9111 -7.5663 -1.4454 18 6 4.3234 -7.7226 -2.8865 19 8 3.8670 -6.9818 -3.7315 20 7 5.1990 -8.6854 -3.2363 21 6 5.5081 -8.8938 -4.5855 22 6 5.7614 -10.1774 -5.0508 23 6 6.0619 -10.3807 -6.3834 24 6 6.1206 -9.3056 -7.2526 25 17 6.5057 -9.5638 -8.9256 26 6 5.8734 -8.0248 -6.7904 27 6 5.5679 -7.8165 -5.4597 28 1 -0.4850 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6239 -2.5567 0.8903 31 1 2.8710 -3.6041 0.8923 32 1 2.8725 -3.6048 -0.8877 33 1 1.3459 -5.1025 2.0523 34 1 0.0221 -4.4002 1.3310 35 1 2.6946 -5.9605 -2.1160 36 1 4.7904 -7.3559 -0.8368 37 1 3.4419 -8.4875 -1.0998 38 1 5.6152 -9.2340 -2.5531 39 1 5.7205 -11.0163 -4.3718 40 1 6.2553 -11.3793 -6.7466 41 1 5.9203 -7.1873 -7.4707 42 1 5.3755 -6.8168 -5.0994 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000424102535.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:13 Heat of formation + Delta-G solvation = -85.801740 kcal Electronic energy + Delta-G solvation = -25424.126779 eV Core-core repulsion = 21428.372421 eV Total energy + Delta-G solvation = -3995.754358 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.88658 -40.84576 -39.66025 -37.52368 -37.11392 -35.88539 -35.54522 -34.83601 -32.11277 -31.68278 -31.16852 -29.25573 -27.63494 -25.48056 -24.23232 -23.51356 -22.37675 -21.69070 -21.21043 -19.38540 -18.91146 -18.31251 -17.82704 -17.62493 -17.14683 -17.03998 -16.55064 -16.21260 -15.94779 -15.66971 -15.56996 -15.23415 -14.77612 -14.73666 -14.50900 -14.47756 -14.36868 -14.02623 -13.67240 -13.42440 -13.37826 -12.94651 -12.92253 -12.68297 -12.53896 -12.52603 -11.87638 -11.80492 -11.73632 -11.35888 -11.30525 -11.07288 -10.82191 -10.56331 -10.25648 -10.08039 -9.64869 -9.18676 -8.21681 -6.31890 -0.02944 0.26156 1.14786 1.29271 1.39429 1.39531 1.50201 1.55584 1.57273 2.27173 2.39784 2.60911 3.11900 3.37906 3.75853 3.77293 3.81871 3.88522 4.12280 4.21452 4.24140 4.27942 4.31032 4.33444 4.45397 4.66743 4.83741 4.84645 4.97487 5.08727 5.15536 5.22470 5.25567 5.28172 5.46538 5.65764 5.78529 5.80628 6.06149 6.20248 6.21117 6.40969 6.49519 6.83585 6.88282 7.12829 7.37012 8.89065 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012762 B = 0.001939 C = 0.001728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2193.543593 B =14437.090870 C =16195.209421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.003 3.997 3 Si 0.960 3.040 4 H -0.274 1.274 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.544 4.544 8 H 0.055 0.945 9 C 0.028 3.972 10 C -0.121 4.121 11 C 0.080 3.920 12 H 0.105 0.895 13 N -0.828 5.828 14 C 0.535 3.465 15 O -0.561 6.561 16 N -0.718 5.718 17 C 0.104 3.896 18 C 0.516 3.484 19 O -0.546 6.546 20 N -0.652 5.652 21 C 0.139 3.861 22 C -0.120 4.120 23 C -0.091 4.091 24 C -0.060 4.060 25 Cl -0.074 7.074 26 C -0.102 4.102 27 C -0.127 4.127 28 H 0.264 0.736 29 H -0.001 1.001 30 H 0.005 0.995 31 H 0.049 0.951 32 H 0.062 0.938 33 H 0.346 0.654 34 H 0.353 0.647 35 H 0.414 0.586 36 H 0.118 0.882 37 H 0.122 0.878 38 H 0.435 0.565 39 H 0.171 0.829 40 H 0.160 0.840 41 H 0.138 0.862 42 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.537 -25.088 -11.770 31.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.195 4.195 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.582 4.582 8 H 0.073 0.927 9 C -0.009 4.009 10 C -0.161 4.161 11 C -0.035 4.035 12 H 0.123 0.877 13 N -0.359 5.359 14 C 0.322 3.678 15 O -0.439 6.439 16 N -0.373 5.373 17 C -0.023 4.023 18 C 0.304 3.696 19 O -0.423 6.423 20 N -0.300 5.300 21 C 0.044 3.956 22 C -0.140 4.140 23 C -0.110 4.110 24 C -0.087 4.087 25 Cl -0.045 7.045 26 C -0.121 4.121 27 C -0.148 4.148 28 H 0.073 0.927 29 H 0.018 0.982 30 H 0.024 0.976 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.159 0.841 34 H 0.168 0.832 35 H 0.253 0.747 36 H 0.136 0.864 37 H 0.140 0.860 38 H 0.275 0.725 39 H 0.188 0.812 40 H 0.178 0.822 41 H 0.156 0.844 42 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 14.078 -25.646 -12.022 31.629 hybrid contribution 0.578 2.246 -0.128 2.323 sum 14.656 -23.400 -12.150 30.166 Atomic orbital electron populations 1.70064 1.07466 1.27738 1.51347 1.25884 0.95774 1.03029 0.94810 0.85528 0.78669 0.78936 0.78409 1.19909 1.20734 1.19114 1.21623 0.93357 0.92462 1.50798 0.92690 1.18981 0.94090 0.92065 0.95736 1.22134 0.98804 0.93727 1.01449 1.21379 0.94798 0.91302 0.96048 0.87672 1.58764 1.18314 1.55654 1.03206 1.20544 0.80774 0.84070 0.82417 1.90630 1.61164 1.54236 1.37848 1.45677 1.46109 1.35195 1.10339 1.21168 0.95807 0.93082 0.92193 1.20863 0.77957 0.79716 0.91096 1.90753 1.55318 1.43779 1.52455 1.43200 1.43364 1.36659 1.06729 1.17958 0.99291 0.93969 0.84334 1.21186 1.01623 0.95316 0.95903 1.21170 0.98630 0.99064 0.92162 1.21094 1.06071 0.95380 0.86147 1.98374 1.92725 1.96904 1.16485 1.21074 0.98990 0.96301 0.95726 1.21273 1.00563 0.99686 0.93263 0.92750 0.98239 0.97640 0.93182 0.91939 0.84124 0.83213 0.74749 0.86440 0.86048 0.72465 0.81200 0.82232 0.84372 0.85138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.70 13.29 21.45 0.28 -54.41 16 2 C 0.00 0.19 5.46 84.65 0.46 0.66 16 3 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 4 H -0.27 -12.11 7.11 99.48 0.71 -11.41 16 5 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 6 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 7 C -0.54 -30.10 9.11 25.60 0.23 -29.86 16 8 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 9 C 0.03 1.40 4.74 29.85 0.14 1.55 16 10 C -0.12 -4.71 4.78 30.59 0.15 -4.56 16 11 C 0.08 2.64 3.21 44.17 0.14 2.79 16 12 H 0.11 3.34 8.14 -2.39 -0.02 3.32 16 13 N -0.83 -27.67 8.94 -171.79 -1.54 -29.20 16 14 C 0.54 16.22 7.08 87.66 0.62 16.84 16 15 O -0.56 -19.36 16.25 -3.03 -0.05 -19.40 16 16 N -0.72 -17.15 5.53 -466.79 -2.58 -19.73 16 17 C 0.10 1.69 6.16 85.63 0.53 2.22 16 18 C 0.52 8.69 7.74 87.66 0.68 9.37 16 19 O -0.55 -13.59 13.10 -3.07 -0.04 -13.63 16 20 N -0.65 -6.92 5.34 -303.48 -1.62 -8.54 16 21 C 0.14 1.94 6.30 38.14 0.24 2.18 16 22 C -0.12 -1.11 9.97 22.39 0.22 -0.89 16 23 C -0.09 -0.98 9.82 22.27 0.22 -0.76 16 24 C -0.06 -0.89 6.32 22.34 0.14 -0.75 16 25 Cl -0.07 -1.08 28.95 -2.72 -0.08 -1.16 16 26 C -0.10 -1.73 9.82 22.27 0.22 -1.51 16 27 C -0.13 -2.37 8.70 22.39 0.19 -2.18 16 28 H 0.26 14.71 8.31 -92.71 -0.77 13.94 16 29 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 30 H 0.01 0.27 6.87 -2.39 -0.02 0.26 16 31 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 32 H 0.06 2.34 8.14 -2.38 -0.02 2.32 16 33 H 0.35 11.57 8.58 -89.70 -0.77 10.80 16 34 H 0.35 12.10 7.55 -89.69 -0.68 11.42 16 35 H 0.41 10.14 7.44 -92.71 -0.69 9.45 16 36 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 37 H 0.12 1.58 8.14 -2.38 -0.02 1.56 16 38 H 0.43 1.17 8.82 -92.71 -0.82 0.35 16 39 H 0.17 0.39 8.06 -2.91 -0.02 0.37 16 40 H 0.16 0.97 8.06 -2.91 -0.02 0.94 16 41 H 0.14 2.17 8.06 -2.91 -0.02 2.14 16 42 H 0.13 2.92 6.22 -2.91 -0.02 2.91 16 Total: -1.00 -72.06 376.01 -1.25 -73.31 By element: Atomic # 1 Polarization: 33.77 SS G_CDS: -1.85 Total: 31.92 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 4.19 Total: -4.91 kcal Atomic # 7 Polarization: -106.43 SS G_CDS: -5.45 Total: -111.88 kcal Atomic # 8 Polarization: -32.95 SS G_CDS: -0.09 Total: -33.04 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 17 Polarization: -1.08 SS G_CDS: -0.08 Total: -1.16 kcal Total: -72.06 -1.25 -73.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000424102535.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.493 kcal (2) G-P(sol) polarization free energy of solvation -72.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.549 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds