Wall clock time and date at job start Tue Mar 31 2020 22:07:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99778 * 2 1 4 4 H 1.48495 * 109.46893 * 269.99834 * 3 2 1 5 5 H 1.48505 * 109.47014 * 29.99415 * 3 2 1 6 6 H 1.48503 * 109.47026 * 149.99378 * 3 2 1 7 7 C 1.37875 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00210 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00091 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.34770 * 119.99863 * 180.02562 * 10 9 7 12 12 O 1.21595 * 120.00364 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99990 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00121 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47270 * 174.91777 * 14 13 11 16 16 H 1.09004 * 109.47331 * 54.34742 * 15 14 13 17 17 C 1.53001 * 109.47483 * 174.34390 * 15 14 13 18 18 C 1.50692 * 109.47533 * 184.99991 * 17 15 14 19 19 C 1.38233 * 120.00722 * 264.72705 * 18 17 15 20 20 C 1.38222 * 120.01484 * 179.76938 * 19 18 17 21 21 C 1.38268 * 120.02498 * 0.50226 * 20 19 18 22 22 C 1.38191 * 120.01294 * 359.75147 * 21 20 19 23 23 C 1.38334 * 120.00763 * 85.00101 * 18 17 15 24 24 Cl 1.73602 * 120.01139 * 359.95335 * 23 18 17 25 25 C 1.50697 * 109.47094 * 294.34314 * 15 14 13 26 26 N 1.34783 * 120.00077 * 151.73667 * 25 15 14 27 27 O 1.21277 * 120.00435 * 331.74343 * 25 15 14 28 28 H 0.97000 * 120.00198 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47138 * 59.99410 * 9 7 2 30 30 H 1.09000 * 109.46391 * 300.00240 * 9 7 2 31 31 H 0.97001 * 119.99739 * 359.97438 * 10 9 7 32 32 H 0.97004 * 120.00418 * 359.97438 * 13 11 10 33 33 H 1.09004 * 109.47182 * 54.91995 * 14 13 11 34 34 H 1.09004 * 109.47303 * 294.91795 * 14 13 11 35 35 H 1.08998 * 109.47017 * 305.00576 * 17 15 14 36 36 H 1.09005 * 109.47015 * 64.99624 * 17 15 14 37 37 H 1.08002 * 119.99386 * 359.97438 * 19 18 17 38 38 H 1.07999 * 119.99280 * 180.27816 * 20 19 18 39 39 H 1.08004 * 119.99348 * 179.77011 * 21 20 19 40 40 H 1.07994 * 120.00939 * 179.97438 * 22 21 20 41 41 H 0.97001 * 120.00335 * 175.40056 * 26 25 15 42 42 H 0.97006 * 119.99615 * 355.11847 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 4.0000 -2.5752 0.0010 11 6 5.3250 -2.8214 0.0020 12 8 6.1152 -1.8972 0.0025 13 7 5.7743 -4.0920 0.0024 14 6 7.2147 -4.3597 0.0029 15 6 7.4536 -5.8654 0.1311 16 1 6.9055 -6.3884 -0.6527 17 6 8.9486 -6.1585 -0.0098 18 6 9.1709 -7.6490 -0.0066 19 6 9.4968 -8.2968 1.1702 20 6 9.6961 -9.6646 1.1743 21 6 9.5797 -10.3841 -0.0006 22 6 9.2591 -9.7369 -1.1787 23 6 9.0544 -8.3683 -1.1824 24 17 8.6510 -7.5546 -2.6619 25 6 6.9742 -6.3371 1.4797 26 7 6.5447 -7.6050 1.6366 27 8 6.9746 -5.5759 2.4237 28 1 -0.4850 0.8400 -0.0004 29 1 3.8746 -0.6799 0.8911 30 1 3.8752 -0.6803 -0.8889 31 1 3.3696 -3.3125 0.0010 32 1 5.1440 -4.8294 0.0024 33 1 7.6796 -3.8452 0.8439 34 1 7.6513 -4.0006 -0.9291 35 1 9.3145 -5.7386 -0.9467 36 1 9.4872 -5.7090 0.8245 37 1 9.5926 -7.7346 2.0874 38 1 9.9463 -10.1710 2.0948 39 1 9.7392 -11.4523 0.0024 40 1 9.1687 -10.2989 -2.0965 41 1 6.2993 -7.9284 2.5176 42 1 6.4772 -8.1929 0.8679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426430179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:17 Heat of formation + Delta-G solvation = -61.492664 kcal Electronic energy + Delta-G solvation = -26442.570582 eV Core-core repulsion = 22447.870345 eV Total energy + Delta-G solvation = -3994.700238 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.68109 -39.51494 -38.93304 -36.87559 -35.68799 -34.26871 -33.91555 -33.37097 -32.25593 -31.27564 -30.58322 -27.86531 -25.99592 -24.02125 -23.23306 -22.22623 -21.72010 -20.32009 -20.07700 -18.23286 -17.69351 -17.43884 -17.16037 -16.27223 -16.13615 -16.00258 -15.56212 -15.13837 -14.97037 -14.41050 -14.33081 -14.23212 -14.03797 -13.85811 -13.44305 -13.10989 -12.78879 -12.70591 -12.53208 -12.27523 -12.14834 -11.95094 -11.82365 -11.75597 -11.51239 -11.06268 -10.91112 -10.69478 -10.05340 -9.91585 -9.90034 -9.53377 -9.40166 -9.37630 -9.17533 -8.77900 -8.68323 -7.91943 -6.15062 -4.16353 0.59814 0.71504 1.69161 2.42582 3.05785 3.25563 3.30101 3.33879 3.40775 3.49867 3.92869 4.05164 4.22844 4.40314 4.42843 4.50114 4.64236 4.67901 4.74807 4.83841 5.00003 5.07642 5.12734 5.20675 5.21926 5.36688 5.55429 5.68642 5.73637 5.85888 5.91235 5.98154 6.25200 6.55118 6.80776 6.82164 7.06741 7.19937 7.32642 7.49423 7.63408 8.06319 8.34933 8.76427 8.88926 9.30384 9.47554 10.96962 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021840 B = 0.002279 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.750747 B =12284.548740 C =12677.354286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.076 3.924 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.259 1.259 7 C -0.540 4.540 8 H 0.078 0.922 9 C 0.238 3.762 10 N -0.723 5.723 11 C 0.698 3.302 12 O -0.603 6.603 13 N -0.752 5.752 14 C 0.157 3.843 15 C -0.113 4.113 16 H 0.098 0.902 17 C -0.073 4.073 18 C -0.079 4.079 19 C -0.094 4.094 20 C -0.113 4.113 21 C -0.109 4.109 22 C -0.110 4.110 23 C -0.033 4.033 24 Cl -0.061 7.061 25 C 0.520 3.480 26 N -0.854 5.854 27 O -0.525 6.525 28 H 0.267 0.733 29 H 0.023 0.977 30 H 0.018 0.982 31 H 0.391 0.609 32 H 0.389 0.611 33 H 0.081 0.919 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.090 0.910 37 H 0.130 0.870 38 H 0.128 0.872 39 H 0.131 0.869 40 H 0.133 0.867 41 H 0.400 0.600 42 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.318 -27.038 -1.475 34.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.127 4.127 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.578 4.578 8 H 0.096 0.904 9 C 0.116 3.884 10 N -0.375 5.375 11 C 0.398 3.602 12 O -0.482 6.482 13 N -0.409 5.409 14 C 0.032 3.968 15 C -0.135 4.135 16 H 0.116 0.884 17 C -0.111 4.111 18 C -0.079 4.079 19 C -0.112 4.112 20 C -0.131 4.131 21 C -0.128 4.128 22 C -0.129 4.129 23 C -0.060 4.060 24 Cl -0.032 7.032 25 C 0.304 3.696 26 N -0.417 5.417 27 O -0.399 6.399 28 H 0.077 0.923 29 H 0.041 0.959 30 H 0.036 0.964 31 H 0.224 0.776 32 H 0.221 0.779 33 H 0.099 0.901 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.109 0.891 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.149 0.851 40 H 0.151 0.849 41 H 0.231 0.769 42 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 21.903 -25.275 -1.106 33.463 hybrid contribution -0.512 -0.415 -0.198 0.688 sum 21.391 -25.689 -1.304 33.454 Atomic orbital electron populations 1.69885 1.06203 1.27348 1.49788 1.24784 0.94793 0.99175 0.93942 0.86806 0.80671 0.83154 0.79022 1.19877 1.20980 1.18365 1.21103 0.88617 0.95149 1.52944 0.90355 1.19350 0.94744 0.77718 0.96628 1.45359 1.03708 1.10958 1.77500 1.16029 0.83524 0.82541 0.78105 1.90860 1.55385 1.43130 1.58816 1.44972 1.06980 1.06651 1.82285 1.20920 0.81744 0.91131 1.03048 1.21588 0.97515 0.98494 0.95946 0.88383 1.20541 0.93825 0.91212 1.05481 1.19714 1.00286 0.95957 0.91984 1.21081 0.98325 0.94643 0.97180 1.21262 0.99286 0.94053 0.98520 1.21152 0.99290 1.00307 0.92006 1.21082 1.00096 0.92292 0.99413 1.20901 1.04374 0.93039 0.87691 1.98404 1.91951 1.79284 1.33540 1.20451 0.76674 0.81771 0.90670 1.43930 1.70290 1.13803 1.13716 1.90815 1.53392 1.53686 1.42027 0.92340 0.95910 0.96376 0.77598 0.77852 0.90081 0.91049 0.88398 0.89145 0.85204 0.85386 0.85148 0.84879 0.76906 0.77353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.14 13.96 55.43 0.77 -26.37 16 2 C 0.08 2.22 5.47 -17.82 -0.10 2.13 16 3 Si 0.88 22.14 27.47 -169.99 -4.67 17.47 16 4 H -0.27 -6.77 7.11 56.52 0.40 -6.36 16 5 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.26 -6.57 6.54 56.52 0.37 -6.20 16 7 C -0.54 -15.33 9.83 -34.44 -0.34 -15.67 16 8 H 0.08 2.30 7.84 -52.48 -0.41 1.89 16 9 C 0.24 6.19 4.50 -5.19 -0.02 6.17 16 10 N -0.72 -15.81 5.55 -66.42 -0.37 -16.18 16 11 C 0.70 14.72 8.57 -86.93 -0.74 13.98 16 12 O -0.60 -15.05 16.34 5.28 0.09 -14.97 16 13 N -0.75 -11.65 5.33 -65.22 -0.35 -12.00 16 14 C 0.16 2.06 4.76 -4.04 -0.02 2.04 16 15 C -0.11 -1.02 2.20 -91.77 -0.20 -1.22 16 16 H 0.10 0.75 7.94 -51.93 -0.41 0.33 16 17 C -0.07 -0.54 4.33 -27.89 -0.12 -0.66 16 18 C -0.08 -0.51 4.47 -104.59 -0.47 -0.97 16 19 C -0.09 -0.54 8.49 -39.59 -0.34 -0.87 16 20 C -0.11 -0.51 10.05 -39.58 -0.40 -0.91 16 21 C -0.11 -0.46 10.05 -39.59 -0.40 -0.86 16 22 C -0.11 -0.57 9.83 -39.55 -0.39 -0.96 16 23 C -0.03 -0.21 6.31 -39.49 -0.25 -0.46 16 24 Cl -0.06 -0.44 27.20 -51.86 -1.41 -1.85 16 25 C 0.52 5.34 6.03 -10.98 -0.07 5.27 16 26 N -0.85 -5.53 7.82 31.22 0.24 -5.28 16 27 O -0.52 -8.02 16.86 5.56 0.09 -7.92 16 28 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 29 H 0.02 0.63 7.20 -51.93 -0.37 0.26 16 30 H 0.02 0.49 7.57 -51.93 -0.39 0.10 16 31 H 0.39 7.54 8.34 -40.82 -0.34 7.20 16 32 H 0.39 4.99 8.36 -40.82 -0.34 4.65 16 33 H 0.08 1.27 7.64 -51.93 -0.40 0.87 16 34 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.10 0.70 7.13 -51.93 -0.37 0.33 16 36 H 0.09 0.69 8.05 -51.93 -0.42 0.28 16 37 H 0.13 0.76 8.06 -52.49 -0.42 0.34 16 38 H 0.13 0.37 8.06 -52.49 -0.42 -0.05 16 39 H 0.13 0.30 8.06 -52.48 -0.42 -0.12 16 40 H 0.13 0.53 8.06 -52.49 -0.42 0.11 16 41 H 0.40 2.32 8.93 -40.82 -0.36 1.96 16 42 H 0.40 1.79 8.78 -40.82 -0.36 1.44 16 LS Contribution 372.62 15.07 5.62 5.62 Total: -1.00 -37.09 372.62 -9.29 -46.38 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: -5.46 Total: 8.12 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: -3.85 Total: 6.99 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: 0.30 Total: -59.83 kcal Atomic # 8 Polarization: -23.07 SS G_CDS: 0.18 Total: -22.89 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -4.67 Total: 17.47 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.41 Total: -1.85 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -37.09 -9.29 -46.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426430179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.113 kcal (2) G-P(sol) polarization free energy of solvation -37.087 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds