Wall clock time and date at job start Tue Mar 31 2020 22:07:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99778 * 2 1 4 4 H 1.48495 * 109.46893 * 269.99834 * 3 2 1 5 5 H 1.48505 * 109.47014 * 29.99415 * 3 2 1 6 6 H 1.48503 * 109.47026 * 149.99378 * 3 2 1 7 7 C 1.37875 * 120.00154 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00210 * 0.02562 * 7 2 1 9 9 C 1.50702 * 120.00091 * 180.02562 * 7 2 1 10 10 N 1.46499 * 109.47238 * 180.02562 * 9 7 2 11 11 C 1.34770 * 119.99863 * 180.02562 * 10 9 7 12 12 O 1.21595 * 120.00364 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99990 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00121 * 179.97438 * 13 11 10 15 15 C 1.52999 * 109.47270 * 174.91777 * 14 13 11 16 16 H 1.09004 * 109.47331 * 54.34742 * 15 14 13 17 17 C 1.53001 * 109.47483 * 174.34390 * 15 14 13 18 18 C 1.50692 * 109.47533 * 184.99991 * 17 15 14 19 19 C 1.38233 * 120.00722 * 264.72705 * 18 17 15 20 20 C 1.38222 * 120.01484 * 179.76938 * 19 18 17 21 21 C 1.38268 * 120.02498 * 0.50226 * 20 19 18 22 22 C 1.38191 * 120.01294 * 359.75147 * 21 20 19 23 23 C 1.38334 * 120.00763 * 85.00101 * 18 17 15 24 24 Cl 1.73602 * 120.01139 * 359.95335 * 23 18 17 25 25 C 1.50697 * 109.47094 * 294.34314 * 15 14 13 26 26 N 1.34783 * 120.00077 * 151.73667 * 25 15 14 27 27 O 1.21277 * 120.00435 * 331.74343 * 25 15 14 28 28 H 0.97000 * 120.00198 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47138 * 59.99410 * 9 7 2 30 30 H 1.09000 * 109.46391 * 300.00240 * 9 7 2 31 31 H 0.97001 * 119.99739 * 359.97438 * 10 9 7 32 32 H 0.97004 * 120.00418 * 359.97438 * 13 11 10 33 33 H 1.09004 * 109.47182 * 54.91995 * 14 13 11 34 34 H 1.09004 * 109.47303 * 294.91795 * 14 13 11 35 35 H 1.08998 * 109.47017 * 305.00576 * 17 15 14 36 36 H 1.09005 * 109.47015 * 64.99624 * 17 15 14 37 37 H 1.08002 * 119.99386 * 359.97438 * 19 18 17 38 38 H 1.07999 * 119.99280 * 180.27816 * 20 19 18 39 39 H 1.08004 * 119.99348 * 179.77011 * 21 20 19 40 40 H 1.07994 * 120.00939 * 179.97438 * 22 21 20 41 41 H 0.97001 * 120.00335 * 175.40056 * 26 25 15 42 42 H 0.97006 * 119.99615 * 355.11847 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4000 5 1 1.4464 2.6527 0.6999 6 1 3.5466 1.4403 0.7002 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 4.0000 -2.5752 0.0010 11 6 5.3250 -2.8214 0.0020 12 8 6.1152 -1.8972 0.0025 13 7 5.7743 -4.0920 0.0024 14 6 7.2147 -4.3597 0.0029 15 6 7.4536 -5.8654 0.1311 16 1 6.9055 -6.3884 -0.6527 17 6 8.9486 -6.1585 -0.0098 18 6 9.1709 -7.6490 -0.0066 19 6 9.4968 -8.2968 1.1702 20 6 9.6961 -9.6646 1.1743 21 6 9.5797 -10.3841 -0.0006 22 6 9.2591 -9.7369 -1.1787 23 6 9.0544 -8.3683 -1.1824 24 17 8.6510 -7.5546 -2.6619 25 6 6.9742 -6.3371 1.4797 26 7 6.5447 -7.6050 1.6366 27 8 6.9746 -5.5759 2.4237 28 1 -0.4850 0.8400 -0.0004 29 1 3.8746 -0.6799 0.8911 30 1 3.8752 -0.6803 -0.8889 31 1 3.3696 -3.3125 0.0010 32 1 5.1440 -4.8294 0.0024 33 1 7.6796 -3.8452 0.8439 34 1 7.6513 -4.0006 -0.9291 35 1 9.3145 -5.7386 -0.9467 36 1 9.4872 -5.7090 0.8245 37 1 9.5926 -7.7346 2.0874 38 1 9.9463 -10.1710 2.0948 39 1 9.7392 -11.4523 0.0024 40 1 9.1687 -10.2989 -2.0965 41 1 6.2993 -7.9284 2.5176 42 1 6.4772 -8.1929 0.8679 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426430179.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:16 Heat of formation + Delta-G solvation = -90.540650 kcal Electronic energy + Delta-G solvation = -26443.830197 eV Core-core repulsion = 22447.870345 eV Total energy + Delta-G solvation = -3995.959853 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.50950 -40.67684 -39.92971 -37.35878 -36.80870 -36.04341 -35.01707 -34.44219 -34.10129 -31.73016 -31.41292 -29.72238 -26.91646 -25.02916 -23.94131 -23.63291 -22.50154 -21.88496 -21.02387 -19.90531 -18.52552 -18.22785 -18.17104 -17.73180 -17.33055 -16.62447 -16.50512 -16.40985 -16.17510 -15.86482 -15.39479 -15.24849 -14.99162 -14.75462 -14.59237 -14.40368 -14.30468 -14.11195 -13.45704 -13.33449 -13.28278 -13.01473 -12.70578 -12.63349 -12.39885 -12.29618 -12.15687 -11.92551 -11.65604 -11.57858 -11.31553 -10.95164 -10.91170 -10.63956 -10.33089 -9.82675 -9.67070 -9.60971 -8.39551 -6.46165 0.18933 0.31867 1.22763 1.33748 1.35320 1.49761 1.59640 1.83470 2.21592 2.29582 2.53442 2.68632 2.95881 3.34135 3.47439 3.74392 3.87620 3.95572 3.98968 4.16511 4.24593 4.34307 4.45338 4.60072 4.66244 4.69980 4.78097 4.85107 4.95779 5.03971 5.05446 5.24926 5.32560 5.45640 5.46797 5.53534 5.55027 5.88757 5.91596 5.94934 6.25708 6.42200 6.55128 7.13388 7.24295 7.34422 7.65199 8.75146 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.021840 B = 0.002279 C = 0.002208 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1281.750747 B =12284.548740 C =12677.354286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.027 3.973 3 Si 0.938 3.062 4 H -0.262 1.262 5 H -0.272 1.272 6 H -0.263 1.263 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.251 3.749 10 N -0.722 5.722 11 C 0.696 3.304 12 O -0.643 6.643 13 N -0.731 5.731 14 C 0.154 3.846 15 C -0.099 4.099 16 H 0.119 0.881 17 C -0.068 4.068 18 C -0.086 4.086 19 C -0.101 4.101 20 C -0.110 4.110 21 C -0.104 4.104 22 C -0.113 4.113 23 C -0.040 4.040 24 Cl -0.073 7.073 25 C 0.523 3.477 26 N -0.830 5.830 27 O -0.580 6.580 28 H 0.273 0.727 29 H 0.007 0.993 30 H 0.012 0.988 31 H 0.404 0.596 32 H 0.405 0.595 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.125 0.875 38 H 0.147 0.853 39 H 0.155 0.845 40 H 0.145 0.855 41 H 0.407 0.593 42 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.453 -29.186 -1.880 36.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.173 4.173 3 Si 0.761 3.239 4 H -0.187 1.187 5 H -0.197 1.197 6 H -0.188 1.188 7 C -0.583 4.583 8 H 0.077 0.923 9 C 0.127 3.873 10 N -0.376 5.376 11 C 0.396 3.604 12 O -0.525 6.525 13 N -0.387 5.387 14 C 0.029 3.971 15 C -0.121 4.121 16 H 0.137 0.863 17 C -0.106 4.106 18 C -0.087 4.087 19 C -0.119 4.119 20 C -0.128 4.128 21 C -0.122 4.122 22 C -0.132 4.132 23 C -0.067 4.067 24 Cl -0.044 7.044 25 C 0.307 3.693 26 N -0.394 5.394 27 O -0.459 6.459 28 H 0.082 0.918 29 H 0.025 0.975 30 H 0.029 0.971 31 H 0.239 0.761 32 H 0.240 0.760 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.119 0.881 36 H 0.102 0.898 37 H 0.143 0.857 38 H 0.164 0.836 39 H 0.172 0.828 40 H 0.163 0.837 41 H 0.239 0.761 42 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 23.028 -27.545 -1.534 35.935 hybrid contribution -0.835 0.062 -0.055 0.839 sum 22.193 -27.482 -1.588 35.360 Atomic orbital electron populations 1.69977 1.07597 1.28622 1.50731 1.25577 0.95576 1.02630 0.93565 0.85854 0.79171 0.79284 0.79570 1.18717 1.19667 1.18772 1.21258 0.89778 0.94621 1.52622 0.92276 1.18953 0.93124 0.79759 0.95458 1.45089 1.04551 1.09930 1.77987 1.16170 0.82725 0.83755 0.77787 1.90828 1.56197 1.44933 1.60576 1.44801 1.08460 1.05128 1.80298 1.21055 0.79807 0.93928 1.02290 1.21471 0.99093 0.95537 0.95992 0.86331 1.20473 0.92341 0.92453 1.05380 1.19561 1.01603 0.95011 0.92496 1.21118 0.98717 0.95364 0.96718 1.21498 0.98331 0.93483 0.99532 1.21450 0.97901 1.01483 0.91318 1.21300 0.99658 0.91824 1.00391 1.20964 1.05155 0.93541 0.87041 1.98401 1.92113 1.79629 1.34296 1.20574 0.76149 0.82303 0.90250 1.43726 1.68278 1.12632 1.14733 1.90805 1.56019 1.55400 1.43658 0.91806 0.97523 0.97057 0.76126 0.76002 0.92705 0.90335 0.88119 0.89767 0.85689 0.83564 0.82779 0.83733 0.76104 0.75743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.65 13.96 21.45 0.30 -56.35 16 2 C 0.03 1.56 5.47 84.65 0.46 2.02 16 3 Si 0.94 45.59 27.47 68.60 1.88 47.47 16 4 H -0.26 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.26 -12.90 6.54 99.48 0.65 -12.25 16 7 C -0.54 -31.23 9.83 25.60 0.25 -30.97 16 8 H 0.06 3.54 7.84 -2.91 -0.02 3.51 16 9 C 0.25 13.14 4.50 85.63 0.38 13.52 16 10 N -0.72 -31.60 5.55 -482.30 -2.68 -34.28 16 11 C 0.70 29.37 8.57 179.06 1.53 30.90 16 12 O -0.64 -32.50 16.34 -4.01 -0.07 -32.57 16 13 N -0.73 -22.25 5.33 -478.53 -2.55 -24.80 16 14 C 0.15 4.02 4.76 86.38 0.41 4.43 16 15 C -0.10 -1.69 2.20 -11.54 -0.03 -1.71 16 16 H 0.12 1.55 7.94 -2.38 -0.02 1.53 16 17 C -0.07 -0.97 4.33 29.85 0.13 -0.84 16 18 C -0.09 -0.97 4.47 -19.85 -0.09 -1.06 16 19 C -0.10 -0.97 8.49 22.26 0.19 -0.78 16 20 C -0.11 -0.68 10.05 22.27 0.22 -0.46 16 21 C -0.10 -0.53 10.05 22.27 0.22 -0.31 16 22 C -0.11 -0.86 9.83 22.29 0.22 -0.64 16 23 C -0.04 -0.44 6.31 22.33 0.14 -0.29 16 24 Cl -0.07 -0.95 27.20 -2.72 -0.07 -1.03 16 25 C 0.52 10.25 6.03 87.65 0.53 10.78 16 26 N -0.83 -9.19 7.82 -173.53 -1.36 -10.55 16 27 O -0.58 -17.83 16.86 -3.02 -0.05 -17.89 16 28 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 29 H 0.01 0.38 7.20 -2.39 -0.02 0.36 16 30 H 0.01 0.62 7.57 -2.39 -0.02 0.60 16 31 H 0.40 15.45 8.34 -92.71 -0.77 14.68 16 32 H 0.40 9.84 8.36 -92.71 -0.77 9.07 16 33 H 0.05 1.77 7.64 -2.39 -0.02 1.75 16 34 H 0.08 1.96 8.14 -2.38 -0.02 1.94 16 35 H 0.10 1.37 7.13 -2.39 -0.02 1.36 16 36 H 0.08 1.30 8.05 -2.38 -0.02 1.28 16 37 H 0.13 1.33 8.06 -2.91 -0.02 1.31 16 38 H 0.15 0.36 8.06 -2.91 -0.02 0.34 16 39 H 0.15 0.07 8.06 -2.91 -0.02 0.05 16 40 H 0.14 0.75 8.06 -2.91 -0.02 0.72 16 41 H 0.41 3.96 8.93 -92.71 -0.83 3.13 16 42 H 0.41 2.60 8.78 -92.70 -0.81 1.78 16 Total: -1.00 -80.85 372.62 -2.15 -82.99 By element: Atomic # 1 Polarization: 24.55 SS G_CDS: -2.14 Total: 22.41 kcal Atomic # 6 Polarization: 20.00 SS G_CDS: 4.58 Total: 24.58 kcal Atomic # 7 Polarization: -119.69 SS G_CDS: -6.29 Total: -125.98 kcal Atomic # 8 Polarization: -50.33 SS G_CDS: -0.12 Total: -50.45 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.88 Total: 47.47 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.07 Total: -1.03 kcal Total: -80.85 -2.15 -82.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426430179.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.547 kcal (2) G-P(sol) polarization free energy of solvation -80.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.541 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds