Wall clock time and date at job start Tue Mar 31 2020 22:07:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00082 * 2 1 4 4 H 1.48496 * 109.47026 * 269.99903 * 3 2 1 5 5 H 1.48501 * 109.47109 * 29.99986 * 3 2 1 6 6 H 1.48506 * 109.46871 * 149.99694 * 3 2 1 7 7 C 1.37883 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99788 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99566 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46635 * 179.97438 * 9 7 2 11 11 C 1.34780 * 120.00042 * 180.02562 * 10 9 7 12 12 O 1.21583 * 119.99740 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99985 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99845 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47276 * 179.97438 * 14 13 11 16 16 H 1.08999 * 109.47356 * 305.00119 * 15 14 13 17 17 C 1.53000 * 109.46904 * 184.99607 * 15 14 13 18 18 C 1.50696 * 109.47080 * 65.79643 * 17 15 14 19 19 C 1.38235 * 120.00788 * 265.50681 * 18 17 15 20 20 C 1.38219 * 120.01674 * 179.76897 * 19 18 17 21 21 C 1.38265 * 120.02385 * 0.50481 * 20 19 18 22 22 C 1.38197 * 120.01409 * 359.74481 * 21 20 19 23 23 C 1.38335 * 120.00725 * 85.77902 * 18 17 15 24 24 Cl 1.73598 * 120.01409 * 359.95676 * 23 18 17 25 25 C 1.50703 * 109.47099 * 65.00068 * 15 14 13 26 26 N 1.34776 * 120.00214 * 213.42661 * 25 15 14 27 27 O 1.21279 * 120.00095 * 33.42128 * 25 15 14 28 28 H 0.97004 * 119.99848 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47130 * 59.99917 * 9 7 2 30 30 H 1.08996 * 109.46665 * 299.99220 * 9 7 2 31 31 H 0.97004 * 120.00348 * 359.97438 * 10 9 7 32 32 H 0.96996 * 120.00157 * 359.97438 * 13 11 10 33 33 H 1.09004 * 109.47381 * 59.99480 * 14 13 11 34 34 H 1.09006 * 109.46933 * 300.00249 * 14 13 11 35 35 H 1.09004 * 109.46988 * 185.78980 * 17 15 14 36 36 H 1.08997 * 109.47626 * 305.79261 * 17 15 14 37 37 H 1.08004 * 119.98832 * 359.97438 * 19 18 17 38 38 H 1.07999 * 119.98658 * 180.22556 * 20 19 18 39 39 H 1.08003 * 119.99248 * 179.76918 * 21 20 19 40 40 H 1.08001 * 120.00632 * 180.02562 * 22 21 20 41 41 H 0.97001 * 119.99737 * 355.10570 * 26 25 15 42 42 H 0.96994 * 120.00005 * 174.84405 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5583 -5.1055 0.0000 13 7 2.6295 -5.9078 -0.0005 14 6 2.1412 -7.2890 -0.0005 15 6 3.3311 -8.2507 -0.0018 16 1 3.9836 -8.0204 -0.8441 17 6 2.8244 -9.6888 -0.1274 18 6 2.1792 -9.8781 -1.4761 19 6 0.8127 -9.7235 -1.6165 20 6 0.2213 -9.8923 -2.8543 21 6 0.9947 -10.2261 -3.9507 22 6 2.3602 -10.3860 -3.8107 23 6 2.9534 -10.2120 -2.5727 24 17 4.6688 -10.4121 -2.3960 25 6 4.1004 -8.0998 1.2853 26 7 5.4382 -8.2629 1.2940 27 8 3.5156 -7.8315 2.3134 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 3.1567 -3.4354 0.0002 32 1 3.5832 -5.7305 -0.0009 33 1 1.5352 -7.4602 -0.8902 34 1 1.5360 -7.4604 0.8897 35 1 3.6617 -10.3793 -0.0252 36 1 2.0930 -9.8862 0.6562 37 1 0.2075 -9.4675 -0.7593 38 1 -0.8459 -9.7679 -2.9641 39 1 0.5315 -10.3616 -4.9170 40 1 2.9642 -10.6463 -4.6673 41 1 5.8974 -8.5468 0.4881 42 1 5.9422 -8.0928 2.1050 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426430180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:19 Heat of formation + Delta-G solvation = -66.256458 kcal Electronic energy + Delta-G solvation = -26527.787878 eV Core-core repulsion = 22532.881067 eV Total energy + Delta-G solvation = -3994.906811 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.52258 -39.45913 -38.85954 -36.80187 -35.67368 -34.11819 -33.83750 -33.36053 -32.19640 -31.07108 -30.29675 -27.38951 -25.90923 -24.13027 -23.03061 -22.32944 -21.70093 -20.23329 -19.99755 -18.10399 -17.59448 -17.43101 -17.11054 -16.22171 -15.91190 -15.72068 -15.51653 -14.97862 -14.78101 -14.53553 -14.31736 -14.09625 -13.83626 -13.72361 -13.32204 -13.06976 -12.95408 -12.62017 -12.26144 -11.93742 -11.91440 -11.79793 -11.75575 -11.55720 -11.23856 -11.09362 -10.91226 -10.84010 -10.25590 -10.06803 -9.90523 -9.34936 -9.31567 -9.22502 -8.99726 -8.70372 -8.59876 -7.67723 -6.10522 -4.16651 0.80339 0.92453 1.76771 2.40926 3.18240 3.27744 3.31493 3.34099 3.36066 3.45167 4.06040 4.22679 4.33202 4.37129 4.53388 4.62794 4.73704 4.78842 4.95095 4.98996 5.03921 5.21462 5.25444 5.29097 5.32219 5.53141 5.62435 5.81963 5.87784 6.00998 6.05381 6.13565 6.46822 6.54275 6.89715 7.05276 7.17966 7.58861 7.61325 7.64450 7.96645 8.04833 8.10148 8.82441 9.01459 9.40319 9.54898 10.99817 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013247 B = 0.002609 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.241390 B =10727.492949 C =11628.790748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.540 4.540 8 H 0.062 0.938 9 C 0.267 3.733 10 N -0.730 5.730 11 C 0.696 3.304 12 O -0.600 6.600 13 N -0.755 5.755 14 C 0.155 3.845 15 C -0.114 4.114 16 H 0.098 0.902 17 C -0.069 4.069 18 C -0.075 4.075 19 C -0.096 4.096 20 C -0.109 4.109 21 C -0.109 4.109 22 C -0.110 4.110 23 C -0.032 4.032 24 Cl -0.073 7.073 25 C 0.520 3.480 26 N -0.857 5.857 27 O -0.524 6.524 28 H 0.265 0.735 29 H 0.024 0.976 30 H 0.025 0.975 31 H 0.385 0.615 32 H 0.387 0.613 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.092 0.908 37 H 0.137 0.863 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.132 0.868 41 H 0.400 0.600 42 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.912 -26.276 -6.496 29.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.141 4.141 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.579 4.579 8 H 0.080 0.920 9 C 0.146 3.854 10 N -0.382 5.382 11 C 0.396 3.604 12 O -0.479 6.479 13 N -0.412 5.412 14 C 0.030 3.970 15 C -0.136 4.136 16 H 0.116 0.884 17 C -0.107 4.107 18 C -0.076 4.076 19 C -0.114 4.114 20 C -0.127 4.127 21 C -0.127 4.127 22 C -0.129 4.129 23 C -0.059 4.059 24 Cl -0.044 7.044 25 C 0.304 3.696 26 N -0.421 5.421 27 O -0.398 6.398 28 H 0.075 0.925 29 H 0.042 0.958 30 H 0.043 0.957 31 H 0.217 0.783 32 H 0.219 0.781 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.106 0.894 36 H 0.110 0.890 37 H 0.155 0.845 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.150 0.850 41 H 0.228 0.772 42 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 9.181 -26.147 -5.893 28.331 hybrid contribution 2.044 1.046 -0.186 2.303 sum 11.225 -25.101 -6.079 28.160 Atomic orbital electron populations 1.69983 1.06071 1.27185 1.49075 1.24945 0.94910 0.99356 0.94841 0.86420 0.79617 0.82731 0.78138 1.20516 1.21028 1.19804 1.21236 0.93241 0.90488 1.52929 0.92011 1.18965 0.87786 0.81048 0.97574 1.45693 1.10675 1.04441 1.77392 1.16074 0.85142 0.80965 0.78266 1.90859 1.14155 1.84228 1.58634 1.45046 1.08520 1.05088 1.82596 1.21019 0.93760 0.79030 1.03215 1.21558 0.98506 0.97037 0.96499 0.88370 1.20482 1.01619 0.94169 0.94415 1.19585 0.93638 1.00177 0.94184 1.21188 0.93326 0.98348 0.98583 1.21331 1.00751 0.98064 0.92515 1.21165 0.93010 0.99170 0.99353 1.21037 0.95348 1.00688 0.95813 1.20788 0.84543 1.05382 0.95142 1.98352 1.12353 1.95852 1.97857 1.20469 0.82577 0.75909 0.90618 1.43923 1.08207 1.72573 1.17409 1.90808 1.68724 1.46210 1.34065 0.92509 0.95776 0.95744 0.78316 0.78100 0.90779 0.90521 0.89429 0.88985 0.84475 0.85035 0.85061 0.84972 0.77170 0.76743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.66 13.29 55.43 0.74 -25.93 16 2 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 4 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 7 C -0.54 -15.12 9.28 -34.44 -0.32 -15.44 16 8 H 0.06 1.62 7.60 -52.49 -0.40 1.22 16 9 C 0.27 7.42 5.43 -5.19 -0.03 7.39 16 10 N -0.73 -16.49 5.55 -66.42 -0.37 -16.86 16 11 C 0.70 15.27 8.57 -86.92 -0.74 14.52 16 12 O -0.60 -15.63 16.34 5.29 0.09 -15.54 16 13 N -0.76 -12.25 5.35 -65.22 -0.35 -12.60 16 14 C 0.16 2.16 4.60 -4.04 -0.02 2.14 16 15 C -0.11 -1.11 2.20 -91.77 -0.20 -1.31 16 16 H 0.10 0.82 8.06 -51.93 -0.42 0.40 16 17 C -0.07 -0.57 4.33 -27.88 -0.12 -0.69 16 18 C -0.07 -0.65 4.61 -104.59 -0.48 -1.13 16 19 C -0.10 -0.86 8.20 -39.59 -0.32 -1.18 16 20 C -0.11 -0.89 10.05 -39.58 -0.40 -1.28 16 21 C -0.11 -0.81 10.05 -39.59 -0.40 -1.21 16 22 C -0.11 -0.85 9.83 -39.55 -0.39 -1.24 16 23 C -0.03 -0.27 6.31 -39.50 -0.25 -0.52 16 24 Cl -0.07 -0.53 27.31 -51.86 -1.42 -1.94 16 25 C 0.52 5.63 6.64 -10.98 -0.07 5.55 16 26 N -0.86 -5.78 8.87 31.22 0.28 -5.50 16 27 O -0.52 -8.23 16.98 5.56 0.09 -8.14 16 28 H 0.27 7.46 8.31 -40.82 -0.34 7.13 16 29 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.02 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.38 7.49 8.34 -40.82 -0.34 7.15 16 32 H 0.39 5.21 8.24 -40.82 -0.34 4.87 16 33 H 0.07 1.05 6.21 -51.93 -0.32 0.73 16 34 H 0.08 1.24 7.68 -51.93 -0.40 0.84 16 35 H 0.09 0.61 7.09 -51.93 -0.37 0.24 16 36 H 0.09 0.77 8.05 -51.93 -0.42 0.35 16 37 H 0.14 1.15 8.06 -52.48 -0.42 0.73 16 38 H 0.13 0.88 8.06 -52.49 -0.42 0.45 16 39 H 0.13 0.70 8.06 -52.48 -0.42 0.27 16 40 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.40 1.63 8.83 -40.82 -0.36 1.27 16 42 H 0.40 2.43 8.93 -40.82 -0.36 2.07 16 LS Contribution 375.94 15.07 5.67 5.67 Total: -1.00 -37.16 375.94 -9.54 -46.70 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: -5.40 Total: 10.59 kcal Atomic # 6 Polarization: 11.15 SS G_CDS: -3.84 Total: 7.30 kcal Atomic # 7 Polarization: -61.18 SS G_CDS: 0.30 Total: -60.88 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: 0.18 Total: -23.68 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 17 Polarization: -0.53 SS G_CDS: -1.42 Total: -1.94 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -37.16 -9.54 -46.70 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426430180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.554 kcal (2) G-P(sol) polarization free energy of solvation -37.165 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.719 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds