Wall clock time and date at job start Tue Mar 31 2020 22:07:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86806 * 120.00082 * 2 1 4 4 H 1.48496 * 109.47026 * 269.99903 * 3 2 1 5 5 H 1.48501 * 109.47109 * 29.99986 * 3 2 1 6 6 H 1.48506 * 109.46871 * 149.99694 * 3 2 1 7 7 C 1.37883 * 120.00064 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99788 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99566 * 0.02562 * 7 2 1 10 10 N 1.46498 * 109.46635 * 179.97438 * 9 7 2 11 11 C 1.34780 * 120.00042 * 180.02562 * 10 9 7 12 12 O 1.21583 * 119.99740 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99985 * 179.97438 * 11 10 9 14 14 C 1.46503 * 119.99845 * 179.97438 * 13 11 10 15 15 C 1.52995 * 109.47276 * 179.97438 * 14 13 11 16 16 H 1.08999 * 109.47356 * 305.00119 * 15 14 13 17 17 C 1.53000 * 109.46904 * 184.99607 * 15 14 13 18 18 C 1.50696 * 109.47080 * 65.79643 * 17 15 14 19 19 C 1.38235 * 120.00788 * 265.50681 * 18 17 15 20 20 C 1.38219 * 120.01674 * 179.76897 * 19 18 17 21 21 C 1.38265 * 120.02385 * 0.50481 * 20 19 18 22 22 C 1.38197 * 120.01409 * 359.74481 * 21 20 19 23 23 C 1.38335 * 120.00725 * 85.77902 * 18 17 15 24 24 Cl 1.73598 * 120.01409 * 359.95676 * 23 18 17 25 25 C 1.50703 * 109.47099 * 65.00068 * 15 14 13 26 26 N 1.34776 * 120.00214 * 213.42661 * 25 15 14 27 27 O 1.21279 * 120.00095 * 33.42128 * 25 15 14 28 28 H 0.97004 * 119.99848 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.47130 * 59.99917 * 9 7 2 30 30 H 1.08996 * 109.46665 * 299.99220 * 9 7 2 31 31 H 0.97004 * 120.00348 * 359.97438 * 10 9 7 32 32 H 0.96996 * 120.00157 * 359.97438 * 13 11 10 33 33 H 1.09004 * 109.47381 * 59.99480 * 14 13 11 34 34 H 1.09006 * 109.46933 * 300.00249 * 14 13 11 35 35 H 1.09004 * 109.46988 * 185.78980 * 17 15 14 36 36 H 1.08997 * 109.47626 * 305.79261 * 17 15 14 37 37 H 1.08004 * 119.98832 * 359.97438 * 19 18 17 38 38 H 1.07999 * 119.98658 * 180.22556 * 20 19 18 39 39 H 1.08003 * 119.99248 * 179.76918 * 21 20 19 40 40 H 1.08001 * 120.00632 * 180.02562 * 22 21 20 41 41 H 0.97001 * 119.99737 * 355.10570 * 26 25 15 42 42 H 0.96994 * 120.00005 * 174.84405 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2509 -2.4992 0.0005 10 7 2.2029 -3.6127 0.0005 11 6 1.7537 -4.8834 0.0000 12 8 0.5583 -5.1055 0.0000 13 7 2.6295 -5.9078 -0.0005 14 6 2.1412 -7.2890 -0.0005 15 6 3.3311 -8.2507 -0.0018 16 1 3.9836 -8.0204 -0.8441 17 6 2.8244 -9.6888 -0.1274 18 6 2.1792 -9.8781 -1.4761 19 6 0.8127 -9.7235 -1.6165 20 6 0.2213 -9.8923 -2.8543 21 6 0.9947 -10.2261 -3.9507 22 6 2.3602 -10.3860 -3.8107 23 6 2.9534 -10.2120 -2.5727 24 17 4.6688 -10.4121 -2.3960 25 6 4.1004 -8.0998 1.2853 26 7 5.4382 -8.2629 1.2940 27 8 3.5156 -7.8315 2.3134 28 1 -0.4850 0.8401 0.0004 29 1 0.6246 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 3.1567 -3.4354 0.0002 32 1 3.5832 -5.7305 -0.0009 33 1 1.5352 -7.4602 -0.8902 34 1 1.5360 -7.4604 0.8897 35 1 3.6617 -10.3793 -0.0252 36 1 2.0930 -9.8862 0.6562 37 1 0.2075 -9.4675 -0.7593 38 1 -0.8459 -9.7679 -2.9641 39 1 0.5315 -10.3616 -4.9170 40 1 2.9642 -10.6463 -4.6673 41 1 5.8974 -8.5468 0.4881 42 1 5.9422 -8.0928 2.1050 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426430180.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:07:18 Heat of formation + Delta-G solvation = -95.551634 kcal Electronic energy + Delta-G solvation = -26529.058212 eV Core-core repulsion = 22532.881067 eV Total energy + Delta-G solvation = -3996.177145 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.49107 -40.56535 -40.11510 -37.38467 -36.83063 -36.04262 -34.93164 -34.49059 -34.12595 -31.67996 -31.22931 -29.27245 -27.08201 -25.19813 -24.36675 -23.59807 -22.39508 -21.85956 -21.05118 -19.79517 -18.52747 -18.25154 -17.96417 -17.77774 -17.35166 -16.67466 -16.48990 -16.45461 -16.28663 -15.71116 -15.37830 -15.27354 -14.94472 -14.74647 -14.47913 -14.21334 -14.04478 -13.97993 -13.88456 -13.43004 -13.09449 -12.87786 -12.70083 -12.55796 -12.49400 -12.34262 -12.22028 -12.01498 -11.70490 -11.47289 -11.26999 -10.99582 -10.79845 -10.67264 -10.31048 -9.84467 -9.62042 -9.57919 -8.27618 -6.44215 0.18149 0.30166 1.16332 1.43323 1.46712 1.53357 1.57606 1.85725 2.24296 2.40006 2.45459 2.70399 3.07132 3.41171 3.51938 3.63174 3.84634 3.96271 3.98841 4.13142 4.21375 4.34032 4.43109 4.59494 4.66209 4.68680 4.78578 4.93325 5.00913 5.09023 5.27603 5.28176 5.42886 5.46037 5.49320 5.52778 5.66595 5.85348 5.87145 5.88836 6.20645 6.40716 6.67097 7.23966 7.28545 7.31139 7.70555 8.84907 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013247 B = 0.002609 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.241390 B =10727.492949 C =11628.790748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.003 3.997 3 Si 0.987 3.013 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.256 1.256 7 C -0.555 4.555 8 H 0.083 0.917 9 C 0.286 3.714 10 N -0.723 5.723 11 C 0.692 3.308 12 O -0.645 6.645 13 N -0.731 5.731 14 C 0.154 3.846 15 C -0.099 4.099 16 H 0.121 0.879 17 C -0.063 4.063 18 C -0.083 4.083 19 C -0.114 4.114 20 C -0.121 4.121 21 C -0.110 4.110 22 C -0.115 4.115 23 C -0.039 4.039 24 Cl -0.062 7.062 25 C 0.521 3.479 26 N -0.832 5.832 27 O -0.578 6.578 28 H 0.269 0.731 29 H -0.012 1.012 30 H -0.017 1.017 31 H 0.403 0.597 32 H 0.405 0.595 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.131 0.869 38 H 0.141 0.859 39 H 0.153 0.847 40 H 0.150 0.850 41 H 0.417 0.583 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.118 -26.591 -7.657 31.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.196 4.196 3 Si 0.810 3.190 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.180 1.180 7 C -0.593 4.593 8 H 0.101 0.899 9 C 0.163 3.837 10 N -0.377 5.377 11 C 0.392 3.608 12 O -0.528 6.528 13 N -0.388 5.388 14 C 0.030 3.970 15 C -0.121 4.121 16 H 0.139 0.861 17 C -0.102 4.102 18 C -0.084 4.084 19 C -0.133 4.133 20 C -0.139 4.139 21 C -0.128 4.128 22 C -0.133 4.133 23 C -0.066 4.066 24 Cl -0.033 7.033 25 C 0.305 3.695 26 N -0.397 5.397 27 O -0.457 6.457 28 H 0.078 0.922 29 H 0.006 0.994 30 H 0.001 0.999 31 H 0.238 0.762 32 H 0.240 0.760 33 H 0.091 0.909 34 H 0.070 0.930 35 H 0.124 0.876 36 H 0.104 0.896 37 H 0.149 0.851 38 H 0.159 0.841 39 H 0.171 0.829 40 H 0.168 0.832 41 H 0.248 0.752 42 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 12.517 -26.531 -7.081 30.178 hybrid contribution 1.047 1.019 0.144 1.468 sum 13.564 -25.512 -6.937 29.714 Atomic orbital electron populations 1.70148 1.08287 1.28577 1.49905 1.26083 0.95806 1.03892 0.93837 0.85125 0.78401 0.76810 0.78658 1.19392 1.20935 1.18024 1.21594 0.94277 0.90454 1.52984 0.89886 1.18410 0.88085 0.83304 0.93914 1.45294 1.10833 1.03821 1.77755 1.16267 0.85115 0.81559 0.77875 1.90827 1.16548 1.84924 1.60488 1.44819 1.08708 1.04744 1.80549 1.21107 0.95618 0.78336 1.01960 1.21441 0.96989 0.96775 0.96910 0.86095 1.20460 1.02146 0.93267 0.94279 1.19595 0.93576 1.00794 0.94446 1.21302 0.93824 0.99175 0.98950 1.21560 1.01544 0.98176 0.92606 1.21465 0.93097 0.98260 0.99999 1.21326 0.95671 1.00132 0.96205 1.20903 0.85161 1.05306 0.95223 1.98351 1.11330 1.95789 1.97846 1.20569 0.83616 0.75333 0.89973 1.43716 1.06812 1.70575 1.18562 1.90802 1.70022 1.49097 1.35780 0.92215 0.99440 0.99932 0.76176 0.76016 0.90906 0.93048 0.87557 0.89572 0.85060 0.84145 0.82907 0.83216 0.75175 0.75870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.99 43.04 29.54 68.60 2.03 45.07 16 4 H -0.27 -11.22 7.11 99.48 0.71 -10.52 16 5 H -0.28 -12.25 7.11 99.48 0.71 -11.55 16 6 H -0.26 -10.42 7.11 99.48 0.71 -9.72 16 7 C -0.56 -31.13 9.28 25.60 0.24 -30.89 16 8 H 0.08 4.20 7.60 -2.91 -0.02 4.18 16 9 C 0.29 16.50 5.43 85.63 0.46 16.97 16 10 N -0.72 -33.15 5.55 -482.30 -2.68 -35.82 16 11 C 0.69 31.08 8.57 179.05 1.53 32.61 16 12 O -0.65 -35.21 16.34 -3.98 -0.07 -35.27 16 13 N -0.73 -23.52 5.35 -478.53 -2.56 -26.08 16 14 C 0.15 4.34 4.60 86.38 0.40 4.74 16 15 C -0.10 -1.80 2.20 -11.54 -0.03 -1.83 16 16 H 0.12 1.67 8.06 -2.39 -0.02 1.65 16 17 C -0.06 -0.98 4.33 29.85 0.13 -0.85 16 18 C -0.08 -1.37 4.61 -19.84 -0.09 -1.47 16 19 C -0.11 -2.06 8.20 22.26 0.18 -1.88 16 20 C -0.12 -1.94 10.05 22.27 0.22 -1.71 16 21 C -0.11 -1.48 10.05 22.27 0.22 -1.26 16 22 C -0.11 -1.55 9.83 22.29 0.22 -1.33 16 23 C -0.04 -0.59 6.31 22.33 0.14 -0.45 16 24 Cl -0.06 -0.73 27.31 -2.72 -0.07 -0.81 16 25 C 0.52 10.54 6.64 87.66 0.58 11.13 16 26 N -0.83 -9.04 8.87 -173.53 -1.54 -10.58 16 27 O -0.58 -18.14 16.98 -3.03 -0.05 -18.20 16 28 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 29 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 30 H -0.02 -1.13 8.14 -2.39 -0.02 -1.15 16 31 H 0.40 15.32 8.34 -92.71 -0.77 14.55 16 32 H 0.40 10.22 8.24 -92.71 -0.76 9.45 16 33 H 0.07 2.11 6.21 -2.39 -0.01 2.09 16 34 H 0.05 1.74 7.68 -2.38 -0.02 1.73 16 35 H 0.11 1.25 7.09 -2.38 -0.02 1.23 16 36 H 0.09 1.45 8.05 -2.39 -0.02 1.44 16 37 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 38 H 0.14 1.87 8.06 -2.91 -0.02 1.85 16 39 H 0.15 1.31 8.06 -2.91 -0.02 1.28 16 40 H 0.15 1.43 8.06 -2.91 -0.02 1.40 16 41 H 0.42 1.92 8.83 -92.71 -0.82 1.10 16 42 H 0.41 3.92 8.93 -92.71 -0.83 3.10 16 Total: -1.00 -83.90 375.94 -2.06 -85.95 By element: Atomic # 1 Polarization: 30.39 SS G_CDS: -2.08 Total: 28.32 kcal Atomic # 6 Polarization: 19.75 SS G_CDS: 4.68 Total: 24.43 kcal Atomic # 7 Polarization: -123.00 SS G_CDS: -6.49 Total: -129.49 kcal Atomic # 8 Polarization: -53.35 SS G_CDS: -0.12 Total: -53.47 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 2.03 Total: 45.07 kcal Atomic # 17 Polarization: -0.73 SS G_CDS: -0.07 Total: -0.81 kcal Total: -83.90 -2.06 -85.95 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426430180.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.597 kcal (2) G-P(sol) polarization free energy of solvation -83.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.552 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds