Wall clock time and date at job start Tue Mar 31 2020 22:41:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38250 * 120.04059 * 2 1 4 4 Cl 1.73600 * 119.97904 * 359.95387 * 3 2 1 5 5 C 1.38380 * 120.03940 * 180.23468 * 3 2 1 6 6 C 1.38282 * 120.13120 * 359.48473 * 5 3 2 7 7 C 1.38101 * 120.08246 * 0.51890 * 6 5 3 8 8 C 1.38827 * 120.03856 * 179.97438 * 2 1 3 9 9 N 1.39926 * 120.06857 * 0.03976 * 8 2 1 10 10 C 1.34768 * 119.99992 * 204.82770 * 9 8 2 11 11 O 1.21290 * 120.00531 * 5.51699 * 10 9 8 12 12 C 1.50706 * 119.99604 * 185.52204 * 10 9 8 13 13 C 1.53006 * 109.46729 * 179.97438 * 12 10 9 14 14 N 1.46504 * 109.46535 * 180.02562 * 13 12 10 15 15 C 1.34778 * 119.99415 * 180.02562 * 14 13 12 16 16 O 1.21585 * 120.00301 * 359.97438 * 15 14 13 17 17 N 1.34778 * 119.99908 * 180.02562 * 15 14 13 18 18 C 1.46498 * 120.00465 * 179.97438 * 17 15 14 19 19 C 1.50698 * 109.47169 * 179.97438 * 18 17 15 20 20 H 1.07994 * 120.00130 * 0.02562 * 19 18 17 21 21 C 1.37883 * 119.99654 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99944 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99712 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46968 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.46959 * 120.00175 * 23 21 19 26 26 H 1.48504 * 109.46792 * 239.99695 * 23 21 19 27 27 H 1.09003 * 109.47229 * 89.99820 * 1 2 3 28 28 H 1.09000 * 109.47298 * 209.99711 * 1 2 3 29 29 H 1.08997 * 109.47182 * 330.00014 * 1 2 3 30 30 H 1.08002 * 119.93301 * 179.72565 * 5 3 2 31 31 H 1.07996 * 119.96005 * 180.25367 * 6 5 3 32 32 H 1.07994 * 120.02180 * 179.72112 * 7 6 5 33 33 H 0.97002 * 119.99472 * 24.81922 * 9 8 2 34 34 H 1.08997 * 109.46953 * 299.99301 * 12 10 9 35 35 H 1.08996 * 109.47364 * 59.99518 * 12 10 9 36 36 H 1.08997 * 109.47000 * 299.99478 * 13 12 10 37 37 H 1.08996 * 109.47424 * 59.99760 * 13 12 10 38 38 H 0.96999 * 120.00612 * 359.97438 * 14 13 12 39 39 H 0.97004 * 119.99605 * 359.97438 * 17 15 14 40 40 H 1.09001 * 109.46798 * 299.99850 * 18 17 15 41 41 H 1.08995 * 109.47172 * 59.99590 * 18 17 15 42 42 H 0.97003 * 119.99758 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1968 0.0000 4 17 1.3316 2.7005 -0.0012 5 6 3.5829 1.1968 -0.0049 6 6 4.2770 0.0008 0.0009 7 6 3.5910 -1.1978 0.0009 8 6 2.2019 -1.2018 0.0005 9 7 1.5046 -2.4149 0.0002 10 6 2.0868 -3.5270 0.4908 11 8 3.1744 -3.4578 1.0231 12 6 1.3864 -4.8566 0.3777 13 6 2.2563 -5.9463 1.0076 14 7 1.5757 -7.2390 0.8972 15 6 2.1580 -8.3511 1.3876 16 8 3.2482 -8.2817 1.9213 17 7 1.5322 -9.5404 1.2856 18 6 2.1652 -10.7495 1.8182 19 6 1.2657 -11.9346 1.5789 20 1 0.3175 -11.8007 1.0797 21 6 1.6538 -13.1900 1.9965 22 7 2.8092 -13.3533 2.6031 23 14 0.5390 -14.6592 1.6992 24 1 -0.6940 -14.2121 1.0028 25 1 1.2487 -15.6570 0.8589 26 1 0.1761 -15.2764 3.0003 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 4.1218 2.1327 -0.0094 31 1 5.3570 0.0040 0.0012 32 1 4.1341 -2.1312 0.0009 33 1 0.6020 -2.4553 -0.3529 34 1 0.4299 -4.8088 0.8981 35 1 1.2169 -5.0898 -0.6734 36 1 3.2126 -5.9940 0.4869 37 1 2.4262 -5.7133 2.0588 38 1 0.7057 -7.2943 0.4718 39 1 0.6625 -9.5958 0.8595 40 1 3.1199 -10.9104 1.3173 41 1 2.3322 -10.6307 2.8887 42 1 3.0820 -14.2365 2.8971 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426432019.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:41 Heat of formation + Delta-G solvation = -53.168691 kcal Electronic energy + Delta-G solvation = -25133.537611 eV Core-core repulsion = 21139.198328 eV Total energy + Delta-G solvation = -3994.339283 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.22458 -39.41472 -38.96357 -36.93656 -35.37824 -35.08124 -34.01929 -33.01013 -32.36992 -31.27930 -29.71109 -27.47138 -27.03050 -24.64047 -23.10412 -22.24598 -21.84757 -20.80884 -20.19068 -18.52019 -17.99578 -17.51351 -16.47736 -16.36022 -16.03491 -15.76541 -15.41707 -15.14963 -14.86281 -14.65561 -14.55284 -14.08988 -13.85623 -13.64476 -13.56719 -13.06909 -12.96394 -12.92239 -12.32009 -12.16974 -12.06144 -12.02114 -11.94470 -11.91366 -11.46715 -11.24270 -10.92383 -10.89991 -10.86456 -10.30030 -10.20534 -9.41835 -9.34454 -9.07483 -8.80228 -8.68699 -8.53752 -7.75591 -6.14610 -4.21208 0.71139 0.74756 1.64175 2.12518 2.45371 3.23179 3.24271 3.29889 3.33309 3.40606 3.96043 4.16853 4.25897 4.34053 4.39889 4.54500 4.61247 4.72952 4.92506 4.94193 5.06070 5.07872 5.13205 5.16334 5.17464 5.21527 5.56087 5.69731 5.76425 5.82022 5.86220 6.00246 6.04338 6.45799 6.79226 6.82044 7.11181 7.52248 7.55673 7.58733 7.60098 7.90876 8.04647 8.77379 8.94655 9.33993 9.48867 10.95673 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.039975 B = 0.001483 C = 0.001439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.271890 B =18881.757939 C =19456.779397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.112 4.112 3 C -0.017 4.017 4 Cl -0.067 7.067 5 C -0.127 4.127 6 C -0.090 4.090 7 C -0.123 4.123 8 C 0.164 3.836 9 N -0.671 5.671 10 C 0.519 3.481 11 O -0.504 6.504 12 C -0.151 4.151 13 C 0.156 3.844 14 N -0.760 5.760 15 C 0.693 3.307 16 O -0.597 6.597 17 N -0.729 5.729 18 C 0.266 3.734 19 C -0.542 4.542 20 H 0.063 0.937 21 C 0.063 3.937 22 N -0.885 5.885 23 Si 0.904 3.096 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.076 0.924 28 H 0.068 0.932 29 H 0.079 0.921 30 H 0.133 0.867 31 H 0.136 0.864 32 H 0.154 0.846 33 H 0.413 0.587 34 H 0.105 0.895 35 H 0.106 0.894 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.390 0.610 39 H 0.386 0.614 40 H 0.025 0.975 41 H 0.025 0.975 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.994 31.957 -9.582 34.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.116 4.116 3 C -0.044 4.044 4 Cl -0.038 7.038 5 C -0.147 4.147 6 C -0.109 4.109 7 C -0.144 4.144 8 C 0.068 3.932 9 N -0.316 5.316 10 C 0.307 3.693 11 O -0.378 6.378 12 C -0.192 4.192 13 C 0.031 3.969 14 N -0.419 5.419 15 C 0.392 3.608 16 O -0.475 6.475 17 N -0.381 5.381 18 C 0.145 3.855 19 C -0.580 4.580 20 H 0.081 0.919 21 C -0.141 4.141 22 N -0.522 5.522 23 Si 0.732 3.268 24 H -0.197 1.197 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.095 0.905 28 H 0.087 0.913 29 H 0.097 0.903 30 H 0.151 0.849 31 H 0.154 0.846 32 H 0.171 0.829 33 H 0.250 0.750 34 H 0.123 0.877 35 H 0.125 0.875 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.223 0.777 39 H 0.218 0.782 40 H 0.043 0.957 41 H 0.043 0.957 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.135 31.902 -8.586 33.434 hybrid contribution -1.920 -0.693 -0.696 2.157 sum -7.054 31.209 -9.283 33.315 Atomic orbital electron populations 1.20812 0.90062 1.03808 1.02958 1.19360 0.96650 0.90280 1.05268 1.20474 0.92222 0.86247 1.05503 1.98363 1.76954 1.31618 1.96877 1.21040 0.91789 0.99416 1.02456 1.21050 1.00449 0.91049 0.98357 1.21582 0.92406 1.00369 1.00005 1.17426 0.91392 0.84343 1.00011 1.43604 1.19086 1.06955 1.61975 1.20732 0.86227 0.85363 0.76967 1.90749 1.20614 1.85914 1.40474 1.21851 1.01077 0.91611 1.04626 1.20699 0.94669 0.79939 1.01633 1.45089 1.23518 1.06760 1.66486 1.16118 0.84362 0.80537 0.79773 1.90897 1.20960 1.85618 1.50055 1.45709 1.22641 1.06976 1.62801 1.18995 0.93464 0.78574 0.94510 1.21262 1.04716 0.92148 1.39890 0.91899 1.24953 0.95333 0.98996 0.94788 1.69992 1.20271 1.23474 1.38475 0.86356 0.80362 0.82141 0.77981 1.19700 1.20826 1.20831 0.90519 0.91323 0.90255 0.84876 0.84579 0.82894 0.74991 0.87680 0.87550 0.90979 0.90970 0.77668 0.78205 0.95698 0.95705 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.61 9.05 36.01 0.33 -0.28 16 2 C -0.11 -0.85 5.90 -104.40 -0.62 -1.46 16 3 C -0.02 -0.14 6.31 -39.52 -0.25 -0.39 16 4 Cl -0.07 -0.48 27.29 -51.86 -1.42 -1.89 16 5 C -0.13 -0.95 9.83 -39.51 -0.39 -1.34 16 6 C -0.09 -0.71 10.04 -39.62 -0.40 -1.11 16 7 C -0.12 -1.17 8.72 -39.38 -0.34 -1.52 16 8 C 0.16 1.39 6.41 -83.70 -0.54 0.85 16 9 N -0.67 -4.46 4.97 -9.86 -0.05 -4.51 16 10 C 0.52 4.65 7.63 -10.99 -0.08 4.56 16 11 O -0.50 -6.60 13.15 5.55 0.07 -6.52 16 12 C -0.15 -1.05 5.82 -27.88 -0.16 -1.22 16 13 C 0.16 1.96 4.96 -4.04 -0.02 1.94 16 14 N -0.76 -10.60 5.56 -65.22 -0.36 -10.96 16 15 C 0.69 14.25 8.57 -86.92 -0.74 13.51 16 16 O -0.60 -15.27 16.34 5.29 0.09 -15.18 16 17 N -0.73 -15.43 5.55 -66.42 -0.37 -15.80 16 18 C 0.27 7.14 5.43 -5.20 -0.03 7.11 16 19 C -0.54 -14.70 9.28 -34.44 -0.32 -15.02 16 20 H 0.06 1.59 7.60 -52.49 -0.40 1.19 16 21 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 22 N -0.88 -26.19 13.29 55.43 0.74 -25.45 16 23 Si 0.90 20.78 29.54 -169.99 -5.02 15.76 16 24 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 26 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 27 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 28 H 0.07 0.27 6.99 -51.93 -0.36 -0.09 16 29 H 0.08 0.42 6.90 -51.93 -0.36 0.06 16 30 H 0.13 0.76 8.06 -52.49 -0.42 0.33 16 31 H 0.14 0.80 8.06 -52.49 -0.42 0.38 16 32 H 0.15 1.66 5.79 -52.49 -0.30 1.36 16 33 H 0.41 1.38 7.40 -40.82 -0.30 1.07 16 34 H 0.10 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 1.05 8.10 -51.93 -0.42 0.63 16 37 H 0.07 1.07 8.10 -51.93 -0.42 0.65 16 38 H 0.39 3.89 8.49 -40.82 -0.35 3.55 16 39 H 0.39 6.82 8.34 -40.82 -0.34 6.48 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 LS Contribution 373.25 15.07 5.62 5.62 Total: -1.00 -36.45 373.25 -9.71 -46.16 By element: Atomic # 1 Polarization: 10.85 SS G_CDS: -5.35 Total: 5.50 kcal Atomic # 6 Polarization: 10.95 SS G_CDS: -3.66 Total: 7.29 kcal Atomic # 7 Polarization: -56.69 SS G_CDS: -0.04 Total: -56.73 kcal Atomic # 8 Polarization: -21.87 SS G_CDS: 0.16 Total: -21.71 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -5.02 Total: 15.76 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.42 Total: -1.89 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -36.45 -9.71 -46.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426432019.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.012 kcal (2) G-P(sol) polarization free energy of solvation -36.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds