Wall clock time and date at job start Tue Mar 31 2020 22:41:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38250 * 120.04059 * 2 1 4 4 Cl 1.73600 * 119.97904 * 359.95387 * 3 2 1 5 5 C 1.38380 * 120.03940 * 180.23468 * 3 2 1 6 6 C 1.38282 * 120.13120 * 359.48473 * 5 3 2 7 7 C 1.38101 * 120.08246 * 0.51890 * 6 5 3 8 8 C 1.38827 * 120.03856 * 179.97438 * 2 1 3 9 9 N 1.39926 * 120.06857 * 0.03976 * 8 2 1 10 10 C 1.34768 * 119.99992 * 204.82770 * 9 8 2 11 11 O 1.21290 * 120.00531 * 5.51699 * 10 9 8 12 12 C 1.50706 * 119.99604 * 185.52204 * 10 9 8 13 13 C 1.53006 * 109.46729 * 179.97438 * 12 10 9 14 14 N 1.46504 * 109.46535 * 180.02562 * 13 12 10 15 15 C 1.34778 * 119.99415 * 180.02562 * 14 13 12 16 16 O 1.21585 * 120.00301 * 359.97438 * 15 14 13 17 17 N 1.34778 * 119.99908 * 180.02562 * 15 14 13 18 18 C 1.46498 * 120.00465 * 179.97438 * 17 15 14 19 19 C 1.50698 * 109.47169 * 179.97438 * 18 17 15 20 20 H 1.07994 * 120.00130 * 0.02562 * 19 18 17 21 21 C 1.37883 * 119.99654 * 179.97438 * 19 18 17 22 22 N 1.31513 * 119.99944 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 119.99712 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46968 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.46959 * 120.00175 * 23 21 19 26 26 H 1.48504 * 109.46792 * 239.99695 * 23 21 19 27 27 H 1.09003 * 109.47229 * 89.99820 * 1 2 3 28 28 H 1.09000 * 109.47298 * 209.99711 * 1 2 3 29 29 H 1.08997 * 109.47182 * 330.00014 * 1 2 3 30 30 H 1.08002 * 119.93301 * 179.72565 * 5 3 2 31 31 H 1.07996 * 119.96005 * 180.25367 * 6 5 3 32 32 H 1.07994 * 120.02180 * 179.72112 * 7 6 5 33 33 H 0.97002 * 119.99472 * 24.81922 * 9 8 2 34 34 H 1.08997 * 109.46953 * 299.99301 * 12 10 9 35 35 H 1.08996 * 109.47364 * 59.99518 * 12 10 9 36 36 H 1.08997 * 109.47000 * 299.99478 * 13 12 10 37 37 H 1.08996 * 109.47424 * 59.99760 * 13 12 10 38 38 H 0.96999 * 120.00612 * 359.97438 * 14 13 12 39 39 H 0.97004 * 119.99605 * 359.97438 * 17 15 14 40 40 H 1.09001 * 109.46798 * 299.99850 * 18 17 15 41 41 H 1.08995 * 109.47172 * 59.99590 * 18 17 15 42 42 H 0.97003 * 119.99758 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1991 1.1968 0.0000 4 17 1.3316 2.7005 -0.0012 5 6 3.5829 1.1968 -0.0049 6 6 4.2770 0.0008 0.0009 7 6 3.5910 -1.1978 0.0009 8 6 2.2019 -1.2018 0.0005 9 7 1.5046 -2.4149 0.0002 10 6 2.0868 -3.5270 0.4908 11 8 3.1744 -3.4578 1.0231 12 6 1.3864 -4.8566 0.3777 13 6 2.2563 -5.9463 1.0076 14 7 1.5757 -7.2390 0.8972 15 6 2.1580 -8.3511 1.3876 16 8 3.2482 -8.2817 1.9213 17 7 1.5322 -9.5404 1.2856 18 6 2.1652 -10.7495 1.8182 19 6 1.2657 -11.9346 1.5789 20 1 0.3175 -11.8007 1.0797 21 6 1.6538 -13.1900 1.9965 22 7 2.8092 -13.3533 2.6031 23 14 0.5390 -14.6592 1.6992 24 1 -0.6940 -14.2121 1.0028 25 1 1.2487 -15.6570 0.8589 26 1 0.1761 -15.2764 3.0003 27 1 -0.3634 0.0000 -1.0277 28 1 -0.3634 -0.8900 0.5138 29 1 -0.3633 0.8900 0.5138 30 1 4.1218 2.1327 -0.0094 31 1 5.3570 0.0040 0.0012 32 1 4.1341 -2.1312 0.0009 33 1 0.6020 -2.4553 -0.3529 34 1 0.4299 -4.8088 0.8981 35 1 1.2169 -5.0898 -0.6734 36 1 3.2126 -5.9940 0.4869 37 1 2.4262 -5.7133 2.0588 38 1 0.7057 -7.2943 0.4718 39 1 0.6625 -9.5958 0.8595 40 1 3.1199 -10.9104 1.3173 41 1 2.3322 -10.6307 2.8887 42 1 3.0820 -14.2365 2.8971 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000426432019.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:41:40 Heat of formation + Delta-G solvation = -80.550606 kcal Electronic energy + Delta-G solvation = -25134.724980 eV Core-core repulsion = 21139.198328 eV Total energy + Delta-G solvation = -3995.526652 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.89069 -40.85166 -39.84216 -37.52683 -36.53861 -35.98529 -35.87832 -34.35069 -33.54928 -32.28462 -30.51130 -29.03314 -27.88197 -25.73228 -24.47217 -23.48201 -22.47396 -21.97077 -21.39964 -19.89126 -18.89230 -18.32214 -17.99235 -17.27253 -17.19736 -16.89628 -16.55931 -16.35195 -16.03465 -15.69803 -15.32169 -15.19664 -15.05886 -14.74576 -14.51833 -14.35836 -14.02228 -13.89751 -13.51886 -13.36152 -12.95875 -12.91461 -12.82751 -12.75478 -12.66630 -12.49975 -12.43356 -12.19156 -11.79128 -11.50892 -11.42480 -11.30455 -10.91207 -10.80023 -10.28824 -9.66047 -9.57734 -9.14594 -8.26312 -6.42835 0.08782 0.14687 1.05632 1.45395 1.47082 1.47284 1.59745 1.65711 2.16548 2.25805 2.42446 2.62511 3.09002 3.43624 3.65153 3.72235 3.85948 3.91252 4.02716 4.08814 4.34513 4.38312 4.53773 4.58804 4.67040 4.74143 4.85068 4.90356 5.10625 5.13684 5.18151 5.21737 5.27778 5.29093 5.41572 5.48770 5.52386 5.70119 5.83906 5.87247 6.27724 6.32877 6.69729 6.99925 7.26840 7.36304 7.75229 8.86358 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.039975 B = 0.001483 C = 0.001439 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 700.271890 B =18881.757939 C =19456.779397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.111 4.111 3 C -0.029 4.029 4 Cl -0.060 7.060 5 C -0.129 4.129 6 C -0.097 4.097 7 C -0.145 4.145 8 C 0.151 3.849 9 N -0.653 5.653 10 C 0.518 3.482 11 O -0.555 6.555 12 C -0.132 4.132 13 C 0.155 3.845 14 N -0.727 5.727 15 C 0.689 3.311 16 O -0.653 6.653 17 N -0.720 5.720 18 C 0.283 3.717 19 C -0.553 4.553 20 H 0.087 0.913 21 C 0.002 3.998 22 N -0.932 5.932 23 Si 0.988 3.012 24 H -0.251 1.251 25 H -0.280 1.280 26 H -0.280 1.280 27 H 0.093 0.907 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.149 0.851 31 H 0.149 0.851 32 H 0.133 0.867 33 H 0.432 0.568 34 H 0.143 0.857 35 H 0.144 0.856 36 H 0.047 0.953 37 H 0.046 0.954 38 H 0.417 0.583 39 H 0.407 0.593 40 H -0.016 1.016 41 H -0.016 1.016 42 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.718 32.705 -11.312 36.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.114 4.114 3 C -0.056 4.056 4 Cl -0.031 7.031 5 C -0.149 4.149 6 C -0.116 4.116 7 C -0.165 4.165 8 C 0.055 3.945 9 N -0.299 5.299 10 C 0.307 3.693 11 O -0.432 6.432 12 C -0.172 4.172 13 C 0.030 3.970 14 N -0.386 5.386 15 C 0.388 3.612 16 O -0.536 6.536 17 N -0.374 5.374 18 C 0.159 3.841 19 C -0.590 4.590 20 H 0.105 0.895 21 C -0.198 4.198 22 N -0.571 5.571 23 Si 0.811 3.189 24 H -0.174 1.174 25 H -0.206 1.206 26 H -0.206 1.206 27 H 0.112 0.888 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.167 0.833 31 H 0.167 0.833 32 H 0.151 0.849 33 H 0.272 0.728 34 H 0.161 0.839 35 H 0.161 0.839 36 H 0.065 0.935 37 H 0.064 0.936 38 H 0.255 0.745 39 H 0.243 0.757 40 H 0.002 0.998 41 H 0.002 0.998 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -8.980 32.728 -10.389 35.492 hybrid contribution -0.710 -0.778 -0.158 1.065 sum -9.690 31.950 -10.547 35.014 Atomic orbital electron populations 1.20901 0.88106 1.04451 1.04206 1.19610 0.98057 0.89658 1.04109 1.20675 0.92569 0.86781 1.05614 1.98363 1.76777 1.31153 1.96847 1.21258 0.91996 0.99833 1.01772 1.21230 1.01280 0.90829 0.98219 1.21585 0.93331 1.00147 1.01468 1.17512 0.91206 0.85263 1.00505 1.43394 1.19618 1.05818 1.61080 1.21062 0.85604 0.86397 0.76208 1.90755 1.22913 1.86608 1.42914 1.21749 1.00665 0.88048 1.06737 1.20700 0.95200 0.80642 1.00493 1.44696 1.24086 1.05232 1.64558 1.16350 0.83737 0.81618 0.79499 1.90864 1.23689 1.86560 1.52450 1.45237 1.23348 1.05846 1.62954 1.18425 0.92615 0.81231 0.91795 1.21647 1.05395 0.92138 1.39865 0.89484 1.26098 0.96862 1.02703 0.94110 1.70163 1.22686 1.24505 1.39755 0.85066 0.78562 0.77343 0.77925 1.17381 1.20605 1.20617 0.88845 0.89877 0.90442 0.83277 0.83296 0.84893 0.72793 0.83878 0.83865 0.93483 0.93585 0.74547 0.75713 0.99778 0.99796 0.92313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.89 9.05 71.24 0.64 -0.25 16 2 C -0.11 -1.50 5.90 -19.72 -0.12 -1.62 16 3 C -0.03 -0.43 6.31 22.31 0.14 -0.28 16 4 Cl -0.06 -0.77 27.29 -2.72 -0.07 -0.84 16 5 C -0.13 -1.84 9.83 22.31 0.22 -1.62 16 6 C -0.10 -1.55 10.04 22.25 0.22 -1.32 16 7 C -0.14 -2.84 8.72 22.40 0.20 -2.64 16 8 C 0.15 2.42 6.41 38.15 0.24 2.67 16 9 N -0.65 -7.36 4.97 -303.51 -1.51 -8.87 16 10 C 0.52 8.64 7.63 87.66 0.67 9.31 16 11 O -0.55 -15.08 13.15 -3.06 -0.04 -15.12 16 12 C -0.13 -1.44 5.82 29.85 0.17 -1.26 16 13 C 0.15 3.81 4.96 86.38 0.43 4.24 16 14 N -0.73 -19.14 5.56 -478.52 -2.66 -21.80 16 15 C 0.69 28.63 8.57 179.05 1.53 30.17 16 16 O -0.65 -35.05 16.34 -3.98 -0.07 -35.12 16 17 N -0.72 -30.46 5.55 -482.31 -2.68 -33.14 16 18 C 0.28 15.75 5.43 85.63 0.46 16.22 16 19 C -0.55 -29.89 9.28 25.60 0.24 -29.65 16 20 H 0.09 4.19 7.60 -2.91 -0.02 4.17 16 21 C 0.00 0.09 5.46 84.66 0.46 0.55 16 22 N -0.93 -56.62 13.29 21.45 0.28 -56.33 16 23 Si 0.99 41.96 29.54 68.60 2.03 43.99 16 24 H -0.25 -9.68 7.11 99.48 0.71 -8.98 16 25 H -0.28 -11.75 7.11 99.48 0.71 -11.04 16 26 H -0.28 -11.76 7.11 99.48 0.71 -11.05 16 27 H 0.09 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.08 0.37 6.99 -2.39 -0.02 0.35 16 29 H 0.08 0.64 6.90 -2.39 -0.02 0.62 16 30 H 0.15 1.54 8.06 -2.91 -0.02 1.51 16 31 H 0.15 1.81 8.06 -2.91 -0.02 1.79 16 32 H 0.13 3.15 5.79 -2.91 -0.02 3.13 16 33 H 0.43 1.35 7.40 -92.71 -0.69 0.66 16 34 H 0.14 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.14 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.05 1.42 8.10 -2.39 -0.02 1.40 16 37 H 0.05 1.40 8.10 -2.39 -0.02 1.38 16 38 H 0.42 6.76 8.49 -92.71 -0.79 5.97 16 39 H 0.41 13.59 8.34 -92.71 -0.77 12.81 16 40 H -0.02 -0.99 8.14 -2.39 -0.02 -1.01 16 41 H -0.02 -1.00 8.14 -2.39 -0.02 -1.02 16 42 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -85.77 373.25 -0.35 -86.11 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: -1.15 Total: 16.62 kcal Atomic # 6 Polarization: 18.98 SS G_CDS: 5.52 Total: 24.50 kcal Atomic # 7 Polarization: -113.58 SS G_CDS: -6.56 Total: -120.14 kcal Atomic # 8 Polarization: -50.14 SS G_CDS: -0.11 Total: -50.24 kcal Atomic # 14 Polarization: 41.96 SS G_CDS: 2.03 Total: 43.99 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -0.07 Total: -0.84 kcal Total: -85.77 -0.35 -86.11 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426432019.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.564 kcal (2) G-P(sol) polarization free energy of solvation -85.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds