Wall clock time and date at job start Tue Mar 31 2020 22:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86801 * 119.99591 * 2 1 4 4 H 1.48496 * 109.46864 * 269.99847 * 3 2 1 5 5 H 1.48492 * 109.47387 * 29.99858 * 3 2 1 6 6 H 1.48506 * 109.47186 * 149.99958 * 3 2 1 7 7 C 1.37877 * 120.00132 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99906 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99999 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46836 * 179.97438 * 9 7 2 11 11 C 1.34776 * 120.00002 * 179.97438 * 10 9 7 12 12 O 1.21589 * 119.99717 * 0.02562 * 11 10 9 13 13 N 1.34775 * 120.00225 * 179.97438 * 11 10 9 14 14 C 1.46500 * 119.99813 * 179.97438 * 13 11 10 15 15 C 1.53006 * 109.46962 * 179.97438 * 14 13 11 16 16 C 1.52998 * 109.47162 * 180.02562 * 15 14 13 17 17 C 1.50703 * 109.46958 * 180.02562 * 16 15 14 18 18 O 1.21286 * 119.99964 * 359.97438 * 17 16 15 19 19 N 1.34777 * 119.99896 * 180.02562 * 17 16 15 20 20 C 1.39971 * 120.00205 * 185.27244 * 19 17 16 21 21 C 1.38868 * 120.05909 * 213.58289 * 20 19 17 22 22 C 1.38105 * 119.94035 * 180.22597 * 21 20 19 23 23 C 1.38383 * 120.05645 * 359.48119 * 22 21 20 24 24 Cl 1.73606 * 119.94041 * 180.29397 * 23 22 21 25 25 C 1.38381 * 120.11918 * 0.26737 * 23 22 21 26 26 C 1.38111 * 120.05418 * 359.97438 * 25 23 22 27 27 H 0.96993 * 120.00518 * 0.02562 * 1 2 3 28 28 H 1.09000 * 109.47395 * 59.99742 * 9 7 2 29 29 H 1.09001 * 109.46596 * 299.99149 * 9 7 2 30 30 H 0.97007 * 120.00314 * 359.97438 * 10 9 7 31 31 H 0.96997 * 120.00204 * 0.02562 * 13 11 10 32 32 H 1.09001 * 109.47020 * 60.00703 * 14 13 11 33 33 H 1.09001 * 109.47601 * 299.99644 * 14 13 11 34 34 H 1.09006 * 109.46837 * 60.00079 * 15 14 13 35 35 H 1.08998 * 109.47449 * 300.00722 * 15 14 13 36 36 H 1.08993 * 109.47163 * 60.00277 * 16 15 14 37 37 H 1.09001 * 109.46957 * 299.99978 * 16 15 14 38 38 H 0.97005 * 120.00136 * 5.26924 * 19 17 16 39 39 H 1.07999 * 120.02596 * 359.97438 * 21 20 19 40 40 H 1.08001 * 119.97035 * 179.74747 * 22 21 20 41 41 H 1.07999 * 119.97502 * 180.02562 * 25 23 22 42 42 H 1.08001 * 120.02252 * 180.02562 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0005 10 7 2.2032 -3.6126 0.0005 11 6 1.7540 -4.8833 0.0011 12 8 0.5586 -5.1055 0.0011 13 7 2.6298 -5.9077 0.0005 14 6 2.1415 -7.2889 0.0017 15 6 3.3316 -8.2506 0.0001 16 6 2.8216 -9.6931 0.0007 17 6 3.9938 -10.6402 -0.0002 18 8 5.1257 -10.2043 -0.0016 19 7 3.7844 -11.9716 -0.0005 20 6 4.8681 -12.8506 0.1101 21 6 4.8393 -14.0758 -0.5429 22 6 5.9079 -14.9432 -0.4283 23 6 7.0111 -14.5877 0.3276 24 17 8.3560 -15.6772 0.4634 25 6 7.0446 -13.3652 0.9751 26 6 5.9765 -12.4962 0.8679 27 1 -0.4850 0.8399 -0.0004 28 1 0.6247 -2.5571 -0.8896 29 1 0.6242 -2.5567 0.8904 30 1 3.1569 -3.4353 0.0002 31 1 3.5835 -5.7304 0.0002 32 1 1.5351 -7.4606 -0.8876 33 1 1.5370 -7.4599 0.8924 34 1 3.9385 -8.0790 0.8892 35 1 3.9359 -8.0795 -0.8907 36 1 2.2151 -9.8643 -0.8885 37 1 2.2172 -9.8644 0.8914 38 1 2.8826 -12.3207 -0.0772 39 1 3.9803 -14.3518 -1.1364 40 1 5.8843 -15.8980 -0.9326 41 1 7.9070 -13.0900 1.5641 42 1 6.0033 -11.5421 1.3731 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426437023.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:26:04 Heat of formation + Delta-G solvation = -60.036441 kcal Electronic energy + Delta-G solvation = -24531.270857 eV Core-core repulsion = 20536.633766 eV Total energy + Delta-G solvation = -3994.637091 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.10353 -39.29804 -39.03213 -36.96994 -35.68375 -35.13044 -34.05007 -32.78828 -32.10039 -31.61313 -30.00163 -27.71442 -26.30532 -23.81138 -23.29168 -22.47022 -21.72058 -20.82276 -20.06722 -18.46578 -17.98137 -17.58065 -17.09542 -16.51549 -16.04844 -15.75448 -15.58791 -15.09187 -14.92311 -14.63074 -14.26215 -14.24407 -14.03284 -13.81976 -13.48009 -13.18938 -12.87670 -12.72361 -12.38625 -12.30710 -12.00342 -11.93752 -11.77806 -11.62978 -11.33020 -11.11832 -10.93710 -10.85544 -10.70263 -10.33789 -10.28360 -9.57498 -9.40741 -9.34806 -8.76944 -8.65600 -8.60121 -7.73336 -6.13564 -4.19965 0.53223 0.76290 1.68545 2.06617 2.43421 3.14328 3.26293 3.31285 3.33901 3.42456 3.97409 4.07915 4.27961 4.34173 4.34570 4.60439 4.64151 4.70174 4.83050 4.89049 5.01194 5.20896 5.22559 5.24892 5.28861 5.36744 5.43861 5.59521 5.69676 5.73655 5.84337 5.95963 6.04958 6.32526 6.77245 6.87995 7.14372 7.54057 7.56441 7.57987 7.59361 7.93110 8.06719 8.78842 8.96835 9.35553 9.50363 10.96738 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.032229 B = 0.001306 C = 0.001262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 868.582477 B =21430.636828 C =22183.577324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.063 3.937 3 Si 0.904 3.096 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.542 4.542 8 H 0.062 0.938 9 C 0.266 3.734 10 N -0.730 5.730 11 C 0.692 3.308 12 O -0.603 6.603 13 N -0.758 5.758 14 C 0.142 3.858 15 C -0.117 4.117 16 C -0.135 4.135 17 C 0.515 3.485 18 O -0.514 6.514 19 N -0.678 5.678 20 C 0.155 3.845 21 C -0.136 4.136 22 C -0.090 4.090 23 C -0.053 4.053 24 Cl -0.073 7.073 25 C -0.089 4.089 26 C -0.110 4.110 27 H 0.265 0.735 28 H 0.024 0.976 29 H 0.025 0.975 30 H 0.387 0.613 31 H 0.392 0.608 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.077 0.923 35 H 0.078 0.922 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.414 0.586 39 H 0.136 0.864 40 H 0.137 0.863 41 H 0.137 0.863 42 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.016 -33.758 0.452 35.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.205 1.205 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.580 4.580 8 H 0.081 0.919 9 C 0.145 3.855 10 N -0.382 5.382 11 C 0.392 3.608 12 O -0.482 6.482 13 N -0.416 5.416 14 C 0.016 3.984 15 C -0.156 4.156 16 C -0.176 4.176 17 C 0.303 3.697 18 O -0.388 6.388 19 N -0.324 5.324 20 C 0.061 3.939 21 C -0.157 4.157 22 C -0.109 4.109 23 C -0.080 4.080 24 Cl -0.044 7.044 25 C -0.108 4.108 26 C -0.130 4.130 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.043 0.957 30 H 0.219 0.781 31 H 0.226 0.774 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.121 0.879 37 H 0.122 0.878 38 H 0.251 0.749 39 H 0.154 0.846 40 H 0.155 0.845 41 H 0.155 0.845 42 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 11.582 -33.484 0.479 35.434 hybrid contribution 0.942 0.730 -0.090 1.195 sum 12.524 -32.753 0.389 35.068 Atomic orbital electron populations 1.69977 1.06089 1.27240 1.49040 1.24941 0.94905 0.99382 0.94776 0.86413 0.79606 0.82673 0.78187 1.20495 1.21023 1.19784 1.21240 0.93288 0.90465 1.53020 0.91941 1.18978 0.87799 0.81098 0.97593 1.45719 1.10801 1.04443 1.77200 1.16151 0.85182 0.81091 0.78382 1.90865 1.14269 1.84301 1.58783 1.45111 1.08921 1.05081 1.82499 1.21006 0.95252 0.79979 1.02114 1.21551 0.98070 0.91500 1.04429 1.21591 0.96163 0.94259 1.05574 1.21057 0.91710 0.82085 0.74799 1.90753 1.24443 1.76845 1.46710 1.43684 1.09348 1.05899 1.73447 1.17836 0.89536 0.90526 0.96050 1.20867 0.99935 0.94033 1.00824 1.20843 0.91735 1.00170 0.98196 1.20919 0.90899 0.93059 1.03140 1.98377 1.45295 1.63543 1.97157 1.20983 0.99155 0.91743 0.98931 1.21153 0.92810 1.00638 0.98444 0.92486 0.95759 0.95736 0.78136 0.77439 0.91938 0.91930 0.90384 0.90378 0.87881 0.87769 0.74917 0.84631 0.84515 0.84510 0.83776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.27 13.29 55.43 0.74 -25.54 16 2 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 3 Si 0.90 20.98 29.54 -169.99 -5.02 15.96 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 7 C -0.54 -14.86 9.28 -34.44 -0.32 -15.18 16 8 H 0.06 1.60 7.60 -52.49 -0.40 1.20 16 9 C 0.27 7.20 5.43 -5.19 -0.03 7.18 16 10 N -0.73 -15.78 5.55 -66.41 -0.37 -16.15 16 11 C 0.69 14.35 8.57 -86.92 -0.74 13.60 16 12 O -0.60 -15.07 16.34 5.29 0.09 -14.98 16 13 N -0.76 -11.13 5.56 -65.22 -0.36 -11.49 16 14 C 0.14 1.65 5.67 -4.04 -0.02 1.63 16 15 C -0.12 -0.98 4.62 -26.73 -0.12 -1.10 16 16 C -0.14 -0.75 5.70 -27.88 -0.16 -0.91 16 17 C 0.51 3.85 7.57 -10.98 -0.08 3.77 16 18 O -0.51 -5.81 13.67 5.55 0.08 -5.73 16 19 N -0.68 -3.61 5.34 -9.85 -0.05 -3.66 16 20 C 0.16 1.08 6.28 -83.68 -0.53 0.56 16 21 C -0.14 -0.75 9.96 -39.40 -0.39 -1.14 16 22 C -0.09 -0.54 9.82 -39.58 -0.39 -0.92 16 23 C -0.05 -0.38 6.32 -39.48 -0.25 -0.63 16 24 Cl -0.07 -0.51 28.95 -51.86 -1.50 -2.01 16 25 C -0.09 -0.66 9.82 -39.58 -0.39 -1.05 16 26 C -0.11 -0.90 8.65 -39.40 -0.34 -1.24 16 27 H 0.27 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.02 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.02 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.39 7.15 8.34 -40.82 -0.34 6.81 16 31 H 0.39 4.68 8.49 -40.82 -0.35 4.34 16 32 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.08 0.69 8.10 -51.93 -0.42 0.27 16 35 H 0.08 0.71 8.10 -51.93 -0.42 0.29 16 36 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 37 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.41 0.81 8.82 -40.82 -0.36 0.45 16 39 H 0.14 0.40 8.06 -52.49 -0.42 -0.02 16 40 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 41 H 0.14 0.85 8.06 -52.49 -0.42 0.43 16 42 H 0.14 1.31 6.42 -52.49 -0.34 0.98 16 LS Contribution 379.90 15.07 5.73 5.73 Total: -1.00 -36.31 379.90 -10.11 -46.42 By element: Atomic # 1 Polarization: 10.81 SS G_CDS: -5.56 Total: 5.25 kcal Atomic # 6 Polarization: 10.08 SS G_CDS: -3.86 Total: 6.21 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -0.05 Total: -56.84 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: 0.16 Total: -20.71 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Atomic # 17 Polarization: -0.51 SS G_CDS: -1.50 Total: -2.01 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.31 -10.11 -46.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426437023.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.616 kcal (2) G-P(sol) polarization free energy of solvation -36.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds