Wall clock time and date at job start Tue Mar 31 2020 22:13:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86802 * 119.99978 * 2 1 4 4 H 1.48506 * 109.46685 * 240.00101 * 3 2 1 5 5 H 1.48497 * 109.47042 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47402 * 120.00243 * 3 2 1 7 7 C 1.38797 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00311 * 179.97438 * 7 2 1 9 9 S 1.76202 * 120.00022 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00206 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47235 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99621 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99856 * 179.72541 * 11 10 9 14 14 C 1.46497 * 119.99470 * 180.27367 * 13 11 10 15 15 C 1.53007 * 109.46703 * 174.66256 * 14 13 11 16 16 C 1.52997 * 115.54782 * 294.40907 * 15 14 13 17 17 O 1.42905 * 109.47409 * 294.84749 * 16 15 14 18 18 C 1.53003 * 117.50182 * 148.74327 * 15 14 13 19 19 C 1.52999 * 117.50432 * 80.08261 * 15 14 13 20 20 H 1.08992 * 117.49731 * 215.00618 * 19 15 14 21 21 C 1.50699 * 117.49404 * 359.97438 * 19 15 14 22 22 C 1.38245 * 119.97594 * 59.72782 * 21 19 15 23 23 C 1.38200 * 120.03046 * 179.76092 * 22 21 19 24 24 C 1.38465 * 119.96860 * 0.51449 * 23 22 21 25 25 F 1.35094 * 120.02399 * 179.76663 * 24 23 22 26 26 C 1.38458 * 119.94776 * 359.73680 * 24 23 22 27 27 C 1.38197 * 119.97886 * 0.02562 * 26 24 23 28 28 H 0.96993 * 120.00060 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47138 * 59.99745 * 10 9 7 30 30 H 1.09007 * 109.46899 * 299.99745 * 10 9 7 31 31 H 0.97000 * 119.99988 * 0.26942 * 13 11 10 32 32 H 1.08998 * 109.47128 * 294.65593 * 14 13 11 33 33 H 1.08996 * 109.47753 * 54.66045 * 14 13 11 34 34 H 1.09005 * 109.47611 * 54.84116 * 16 15 14 35 35 H 1.09000 * 109.47541 * 174.84298 * 16 15 14 36 36 H 0.96698 * 114.00571 * 180.02562 * 17 16 15 37 37 H 1.09000 * 117.49443 * 359.97438 * 18 15 14 38 38 H 1.08995 * 117.50213 * 145.01374 * 18 15 14 39 39 H 1.08004 * 119.98623 * 0.02562 * 22 21 19 40 40 H 1.07991 * 120.01423 * 180.25408 * 23 22 21 41 41 H 1.08007 * 120.01195 * 180.02562 * 26 24 23 42 42 H 1.07999 * 119.99276 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0021 11 6 1.9875 -5.3028 0.0017 12 8 0.7912 -5.5023 0.0009 13 7 2.8443 -6.3431 -0.0029 14 6 2.3305 -7.7150 -0.0093 15 6 3.4968 -8.6957 -0.1477 16 6 4.2565 -8.6344 -1.4744 17 8 3.3911 -9.0371 -2.5379 18 6 3.3524 -10.0642 0.5211 19 6 4.3014 -9.0191 1.1128 20 1 5.3719 -9.1881 0.9969 21 6 3.8848 -8.3468 2.3956 22 6 2.6109 -8.5422 2.8957 23 6 2.2293 -7.9302 4.0746 24 6 3.1201 -7.1126 4.7493 25 9 2.7467 -6.5101 5.8994 26 6 4.3940 -6.9136 4.2448 27 6 4.7750 -7.5305 3.0683 28 1 -0.4850 0.8400 0.0004 29 1 3.1238 -3.7309 0.8924 30 1 3.1252 -3.7317 -0.8875 31 1 3.8011 -6.1834 -0.0019 32 1 1.8013 -7.9092 0.9236 33 1 1.6466 -7.8430 -0.8483 34 1 4.5983 -7.6145 -1.6507 35 1 5.1160 -9.3034 -1.4322 36 1 3.8074 -9.0228 -3.4106 37 1 2.4266 -10.2657 1.0600 38 1 3.7988 -10.9208 0.0161 39 1 1.9149 -9.1767 2.3671 40 1 1.2355 -8.0863 4.4672 41 1 5.0899 -6.2764 4.7704 42 1 5.7684 -7.3751 2.6743 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430124774.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:31 Heat of formation + Delta-G solvation = -81.318828 kcal Electronic energy + Delta-G solvation = -26640.757740 eV Core-core repulsion = 22627.321521 eV Total energy + Delta-G solvation = -4013.436220 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -48.96332 -40.59609 -38.89330 -38.02248 -36.15001 -33.89629 -32.40278 -31.40509 -30.69086 -29.63665 -27.22723 -26.04055 -25.36429 -24.09339 -23.04272 -21.08365 -20.24011 -19.59513 -18.02227 -17.70840 -17.59745 -16.79443 -16.38489 -16.03699 -15.71250 -15.52832 -15.33119 -14.95263 -14.78210 -14.74983 -14.42168 -13.87062 -13.82629 -13.45888 -13.36861 -13.04481 -12.85740 -12.79405 -12.53902 -12.52090 -11.89127 -11.75801 -11.36945 -11.09778 -11.02057 -11.01985 -10.80694 -10.74378 -10.63251 -10.18271 -9.79347 -9.31944 -9.30264 -9.03681 -8.73925 -8.61387 -8.20107 -6.46397 -6.18830 -3.89061 0.88475 1.03550 2.90217 3.14613 3.18659 3.24907 3.29225 3.33551 3.57034 3.79920 3.87412 4.12255 4.23041 4.26853 4.38972 4.47109 4.51312 4.61251 4.70178 4.84169 4.99290 5.01563 5.16088 5.18170 5.23542 5.31620 5.36252 5.51152 5.59972 5.66452 5.70832 5.79453 5.81719 5.93800 5.95597 5.97969 6.04259 6.17135 6.25619 6.68634 6.68897 7.33569 7.61498 7.78957 8.37473 8.69750 9.26180 10.88588 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009955 B = 0.003359 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.904143 B = 8333.543074 C =10166.336799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.074 3.926 3 Si 0.918 3.082 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.071 0.929 9 S -0.059 6.059 10 C -0.152 4.152 11 C 0.532 3.468 12 O -0.518 6.518 13 N -0.731 5.731 14 C 0.157 3.843 15 C -0.128 4.128 16 C 0.115 3.885 17 O -0.565 6.565 18 C -0.147 4.147 19 C -0.098 4.098 20 H 0.119 0.881 21 C -0.063 4.063 22 C -0.086 4.086 23 C -0.147 4.147 24 C 0.099 3.901 25 F -0.139 7.139 26 C -0.150 4.150 27 C -0.082 4.082 28 H 0.269 0.731 29 H 0.087 0.913 30 H 0.087 0.913 31 H 0.395 0.605 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.053 0.947 35 H 0.048 0.952 36 H 0.381 0.619 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.133 0.867 40 H 0.136 0.864 41 H 0.136 0.864 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.871 -22.575 2.658 26.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.135 4.135 3 Si 0.744 3.256 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.684 4.684 8 H 0.089 0.911 9 S 0.168 5.832 10 C -0.303 4.303 11 C 0.318 3.682 12 O -0.392 6.392 13 N -0.385 5.385 14 C 0.033 3.967 15 C -0.128 4.128 16 C 0.037 3.963 17 O -0.370 6.370 18 C -0.184 4.184 19 C -0.116 4.116 20 H 0.137 0.863 21 C -0.063 4.063 22 C -0.104 4.104 23 C -0.166 4.166 24 C 0.080 3.920 25 F -0.118 7.118 26 C -0.169 4.169 27 C -0.100 4.100 28 H 0.079 0.921 29 H 0.106 0.894 30 H 0.106 0.894 31 H 0.228 0.772 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.071 0.929 35 H 0.066 0.934 36 H 0.228 0.772 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.151 0.849 40 H 0.154 0.846 41 H 0.153 0.847 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 11.240 -22.836 3.196 25.652 hybrid contribution 2.825 1.621 -0.217 3.264 sum 14.065 -21.216 2.979 25.628 Atomic orbital electron populations 1.70006 1.05945 1.27525 1.46820 1.24977 0.95005 0.98960 0.94560 0.86241 0.79259 0.81331 0.78771 1.19961 1.20803 1.19951 1.22828 0.94848 0.91745 1.58999 0.91056 1.85400 1.04941 0.96204 1.96693 1.23513 1.06495 0.95565 1.04678 1.20246 0.86519 0.86177 0.75226 1.90698 1.15356 1.85577 1.47601 1.45855 1.09666 1.05242 1.77734 1.20776 0.93616 0.79662 1.02618 1.21718 1.00099 0.99021 0.92000 1.21533 0.90729 0.98673 0.85358 1.86507 1.41653 1.90701 1.18146 1.23181 1.01303 0.91921 1.01976 1.21171 0.98072 1.02165 0.90170 0.86345 1.19010 0.94027 0.98194 0.95059 1.20917 0.95755 0.99045 0.94713 1.21149 1.00157 0.98714 0.96531 1.17751 0.94194 0.95924 0.84132 1.91512 1.91839 1.81604 1.46830 1.21129 0.95363 1.02403 0.97971 1.20750 0.99715 0.95605 0.93962 0.92149 0.89440 0.89436 0.77206 0.91244 0.90319 0.92879 0.93370 0.77229 0.87822 0.87646 0.84901 0.84614 0.84655 0.85040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.48 13.22 55.49 0.73 -25.75 16 2 C 0.07 2.14 5.49 -17.43 -0.10 2.05 16 3 Si 0.92 21.60 29.55 -169.99 -5.02 16.58 16 4 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.54 -15.47 9.50 30.94 0.29 -15.18 16 8 H 0.07 1.94 7.80 -52.49 -0.41 1.53 16 9 S -0.06 -1.63 20.57 -107.50 -2.21 -3.84 16 10 C -0.15 -3.14 6.16 36.01 0.22 -2.92 16 11 C 0.53 10.24 7.85 -10.98 -0.09 10.16 16 12 O -0.52 -12.15 15.85 5.56 0.09 -12.06 16 13 N -0.73 -10.07 5.41 -60.29 -0.33 -10.40 16 14 C 0.16 1.95 4.84 -4.04 -0.02 1.93 16 15 C -0.13 -1.09 1.79 -154.51 -0.28 -1.37 16 16 C 0.11 0.86 6.81 37.16 0.25 1.11 16 17 O -0.56 -5.02 13.56 -35.23 -0.48 -5.50 16 18 C -0.15 -1.02 9.29 -26.69 -0.25 -1.27 16 19 C -0.10 -0.68 5.73 -91.74 -0.53 -1.21 16 20 H 0.12 0.61 8.14 -51.93 -0.42 0.19 16 21 C -0.06 -0.56 5.05 -104.62 -0.53 -1.09 16 22 C -0.09 -0.86 7.35 -39.59 -0.29 -1.15 16 23 C -0.15 -1.65 10.03 -39.51 -0.40 -2.04 16 24 C 0.10 1.20 7.30 -39.42 -0.29 0.91 16 25 F -0.14 -1.88 17.27 2.25 0.04 -1.84 16 26 C -0.15 -1.55 10.03 -39.52 -0.40 -1.94 16 27 C -0.08 -0.72 9.73 -39.59 -0.39 -1.11 16 28 H 0.27 7.63 8.31 -40.82 -0.34 7.29 16 29 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 30 H 0.09 1.67 8.14 -51.91 -0.42 1.24 16 31 H 0.39 4.38 8.20 -40.82 -0.33 4.04 16 32 H 0.07 0.90 4.93 -51.93 -0.26 0.65 16 33 H 0.08 1.17 8.09 -51.93 -0.42 0.75 16 34 H 0.05 0.39 7.79 -51.93 -0.40 -0.01 16 35 H 0.05 0.26 8.09 -51.93 -0.42 -0.16 16 36 H 0.38 1.75 9.12 45.56 0.42 2.16 16 37 H 0.10 0.72 6.19 -51.93 -0.32 0.39 16 38 H 0.11 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.13 1.14 5.30 -52.48 -0.28 0.86 16 40 H 0.14 1.37 8.06 -52.49 -0.42 0.95 16 41 H 0.14 1.19 8.06 -52.48 -0.42 0.76 16 42 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 LS Contribution 374.29 15.07 5.64 5.64 Total: -1.00 -36.86 374.29 -8.83 -45.69 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -4.52 Total: 4.61 kcal Atomic # 6 Polarization: -10.35 SS G_CDS: -2.77 Total: -13.11 kcal Atomic # 7 Polarization: -36.56 SS G_CDS: 0.41 Total: -36.15 kcal Atomic # 8 Polarization: -17.17 SS G_CDS: -0.39 Total: -17.56 kcal Atomic # 9 Polarization: -1.88 SS G_CDS: 0.04 Total: -1.84 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Atomic # 16 Polarization: -1.63 SS G_CDS: -2.21 Total: -3.84 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -36.86 -8.83 -45.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430124774.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.633 kcal (2) G-P(sol) polarization free energy of solvation -36.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds