Wall clock time and date at job start Tue Mar 31 2020 22:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86802 * 119.99978 * 2 1 4 4 H 1.48506 * 109.46685 * 240.00101 * 3 2 1 5 5 H 1.48497 * 109.47042 * 359.97438 * 3 2 1 6 6 H 1.48490 * 109.47402 * 120.00243 * 3 2 1 7 7 C 1.38797 * 120.00243 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00311 * 179.97438 * 7 2 1 9 9 S 1.76202 * 120.00022 * 0.02562 * 7 2 1 10 10 C 1.81000 * 100.00206 * 180.02562 * 9 7 2 11 11 C 1.50704 * 109.47235 * 180.02562 * 10 9 7 12 12 O 1.21277 * 119.99621 * 359.97438 * 11 10 9 13 13 N 1.34774 * 119.99856 * 179.72541 * 11 10 9 14 14 C 1.46497 * 119.99470 * 180.27367 * 13 11 10 15 15 C 1.53007 * 109.46703 * 174.66256 * 14 13 11 16 16 C 1.52997 * 115.54782 * 294.40907 * 15 14 13 17 17 O 1.42905 * 109.47409 * 294.84749 * 16 15 14 18 18 C 1.53003 * 117.50182 * 148.74327 * 15 14 13 19 19 C 1.52999 * 117.50432 * 80.08261 * 15 14 13 20 20 H 1.08992 * 117.49731 * 215.00618 * 19 15 14 21 21 C 1.50699 * 117.49404 * 359.97438 * 19 15 14 22 22 C 1.38245 * 119.97594 * 59.72782 * 21 19 15 23 23 C 1.38200 * 120.03046 * 179.76092 * 22 21 19 24 24 C 1.38465 * 119.96860 * 0.51449 * 23 22 21 25 25 F 1.35094 * 120.02399 * 179.76663 * 24 23 22 26 26 C 1.38458 * 119.94776 * 359.73680 * 24 23 22 27 27 C 1.38197 * 119.97886 * 0.02562 * 26 24 23 28 28 H 0.96993 * 120.00060 * 359.97438 * 1 2 3 29 29 H 1.08993 * 109.47138 * 59.99745 * 10 9 7 30 30 H 1.09007 * 109.46899 * 299.99745 * 10 9 7 31 31 H 0.97000 * 119.99988 * 0.26942 * 13 11 10 32 32 H 1.08998 * 109.47128 * 294.65593 * 14 13 11 33 33 H 1.08996 * 109.47753 * 54.66045 * 14 13 11 34 34 H 1.09005 * 109.47611 * 54.84116 * 16 15 14 35 35 H 1.09000 * 109.47541 * 174.84298 * 16 15 14 36 36 H 0.96698 * 114.00571 * 180.02562 * 17 16 15 37 37 H 1.09000 * 117.49443 * 359.97438 * 18 15 14 38 38 H 1.08995 * 117.50213 * 145.01374 * 18 15 14 39 39 H 1.08004 * 119.98623 * 0.02562 * 22 21 19 40 40 H 1.07991 * 120.01423 * 180.25408 * 23 22 21 41 41 H 1.08007 * 120.01195 * 180.02562 * 26 24 23 42 42 H 1.07999 * 119.99276 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 3.1040 1.6963 -1.2126 5 1 1.2853 2.7464 -0.0006 6 1 3.1040 1.6965 1.2124 7 6 2.0103 -1.2020 0.0005 8 1 3.0903 -1.2020 0.0001 9 16 1.1294 -2.7280 0.0005 10 6 2.5159 -3.8914 0.0021 11 6 1.9875 -5.3028 0.0017 12 8 0.7912 -5.5023 0.0009 13 7 2.8443 -6.3431 -0.0029 14 6 2.3305 -7.7150 -0.0093 15 6 3.4968 -8.6957 -0.1477 16 6 4.2565 -8.6344 -1.4744 17 8 3.3911 -9.0371 -2.5379 18 6 3.3524 -10.0642 0.5211 19 6 4.3014 -9.0191 1.1128 20 1 5.3719 -9.1881 0.9969 21 6 3.8848 -8.3468 2.3956 22 6 2.6109 -8.5422 2.8957 23 6 2.2293 -7.9302 4.0746 24 6 3.1201 -7.1126 4.7493 25 9 2.7467 -6.5101 5.8994 26 6 4.3940 -6.9136 4.2448 27 6 4.7750 -7.5305 3.0683 28 1 -0.4850 0.8400 0.0004 29 1 3.1238 -3.7309 0.8924 30 1 3.1252 -3.7317 -0.8875 31 1 3.8011 -6.1834 -0.0019 32 1 1.8013 -7.9092 0.9236 33 1 1.6466 -7.8430 -0.8483 34 1 4.5983 -7.6145 -1.6507 35 1 5.1160 -9.3034 -1.4322 36 1 3.8074 -9.0228 -3.4106 37 1 2.4266 -10.2657 1.0600 38 1 3.7988 -10.9208 0.0161 39 1 1.9149 -9.1767 2.3671 40 1 1.2355 -8.0863 4.4672 41 1 5.0899 -6.2764 4.7704 42 1 5.7684 -7.3751 2.6743 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430124774.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:30 Heat of formation + Delta-G solvation = -108.006499 kcal Electronic energy + Delta-G solvation = -26641.915005 eV Core-core repulsion = 22627.321521 eV Total energy + Delta-G solvation = -4014.593484 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.92092 -41.40522 -40.23982 -38.81081 -36.77815 -35.21180 -34.58476 -32.16938 -31.58115 -31.05526 -28.07610 -27.63618 -26.85987 -24.81538 -23.79071 -21.89913 -21.57148 -20.44807 -19.71225 -18.76264 -18.21376 -17.84543 -17.55896 -17.18672 -16.88189 -16.73811 -16.58499 -16.40334 -15.91108 -15.69132 -15.63013 -15.11086 -14.66888 -14.56247 -14.44020 -14.37831 -14.17274 -13.68361 -13.52948 -13.42461 -13.17364 -13.14702 -12.86362 -12.64920 -12.48767 -12.13007 -11.84909 -11.74344 -11.44409 -11.32694 -11.13018 -10.93755 -10.65317 -10.28110 -10.18666 -9.93538 -9.39979 -8.67256 -8.34459 -6.13012 0.08743 0.27053 1.26194 1.43655 1.46341 1.56030 1.63543 2.16234 2.27541 2.44062 2.98870 2.99598 3.22324 3.32996 3.33341 3.60618 3.71877 3.77287 3.87558 3.92662 3.98613 4.03075 4.24642 4.28239 4.29009 4.45827 4.48093 4.59962 4.65569 4.77486 4.86297 4.90534 4.97198 4.99954 5.04930 5.16103 5.19778 5.29021 5.40927 5.44096 5.53669 5.91698 6.19341 6.52133 6.97415 7.06424 7.26511 8.74674 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.009955 B = 0.003359 C = 0.002754 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2811.904143 B = 8333.543074 C =10166.336799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.014 3.986 3 Si 0.998 3.002 4 H -0.260 1.260 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.153 6.153 10 C -0.126 4.126 11 C 0.533 3.467 12 O -0.569 6.569 13 N -0.702 5.702 14 C 0.158 3.842 15 C -0.138 4.138 16 C 0.114 3.886 17 O -0.592 6.592 18 C -0.141 4.141 19 C -0.080 4.080 20 H 0.153 0.847 21 C -0.063 4.063 22 C -0.096 4.096 23 C -0.166 4.166 24 C 0.066 3.934 25 F -0.156 7.156 26 C -0.157 4.157 27 C -0.077 4.077 28 H 0.271 0.729 29 H 0.106 0.894 30 H 0.110 0.890 31 H 0.413 0.587 32 H 0.062 0.938 33 H 0.051 0.949 34 H 0.053 0.947 35 H 0.080 0.920 36 H 0.397 0.603 37 H 0.099 0.901 38 H 0.126 0.874 39 H 0.141 0.859 40 H 0.133 0.867 41 H 0.148 0.852 42 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.905 -23.414 1.793 29.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.191 4.191 3 Si 0.820 3.180 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.187 1.187 7 C -0.695 4.695 8 H 0.101 0.899 9 S 0.074 5.926 10 C -0.278 4.278 11 C 0.318 3.682 12 O -0.447 6.447 13 N -0.355 5.355 14 C 0.035 3.965 15 C -0.138 4.138 16 C 0.036 3.964 17 O -0.400 6.400 18 C -0.178 4.178 19 C -0.098 4.098 20 H 0.171 0.829 21 C -0.063 4.063 22 C -0.114 4.114 23 C -0.185 4.185 24 C 0.047 3.953 25 F -0.135 7.135 26 C -0.175 4.175 27 C -0.094 4.094 28 H 0.080 0.920 29 H 0.124 0.876 30 H 0.128 0.872 31 H 0.249 0.751 32 H 0.080 0.920 33 H 0.069 0.931 34 H 0.071 0.929 35 H 0.098 0.902 36 H 0.247 0.753 37 H 0.117 0.883 38 H 0.144 0.856 39 H 0.159 0.841 40 H 0.151 0.849 41 H 0.166 0.834 42 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 15.338 -23.718 2.320 28.340 hybrid contribution 1.577 1.727 0.034 2.339 sum 16.915 -21.991 2.353 27.844 Atomic orbital electron populations 1.70181 1.08039 1.28670 1.47962 1.26133 0.95939 1.03328 0.93675 0.85009 0.77825 0.75644 0.79552 1.18464 1.20412 1.18672 1.23171 0.95338 0.91961 1.59004 0.89878 1.85615 1.10636 0.99283 1.97040 1.23339 1.03472 0.94442 1.06515 1.20051 0.86237 0.86685 0.75196 1.90687 1.17545 1.86118 1.50362 1.45572 1.09942 1.04801 1.75149 1.20786 0.95255 0.79431 1.01079 1.21606 0.99460 0.99044 0.93731 1.21644 0.91017 0.99567 0.84131 1.86465 1.43143 1.90839 1.19588 1.23314 1.01403 0.91808 1.01275 1.21281 0.99676 1.01035 0.87830 0.82926 1.19306 0.93396 0.97832 0.95788 1.21127 0.96816 0.99104 0.94303 1.21302 1.00316 0.99402 0.97441 1.18140 0.95586 0.97212 0.84361 1.91459 1.92141 1.82082 1.47813 1.21409 0.94705 1.02690 0.98718 1.21148 1.01048 0.94318 0.92933 0.92006 0.87622 0.87224 0.75066 0.92005 0.93098 0.92872 0.90162 0.75326 0.88294 0.85585 0.84141 0.84876 0.83399 0.81553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.88 13.22 21.65 0.29 -56.60 16 2 C 0.01 0.80 5.49 84.86 0.47 1.27 16 3 Si 1.00 43.91 29.55 68.60 2.03 45.94 16 4 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 5 H -0.28 -11.98 7.11 99.48 0.71 -11.27 16 6 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 7 C -0.55 -31.65 9.50 67.95 0.65 -31.01 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 9 S -0.15 -8.70 20.57 -56.49 -1.16 -9.86 16 10 C -0.13 -5.14 6.16 71.24 0.44 -4.70 16 11 C 0.53 20.42 7.85 87.66 0.69 21.11 16 12 O -0.57 -27.61 15.85 -3.02 -0.05 -27.65 16 13 N -0.70 -18.24 5.41 -463.06 -2.51 -20.75 16 14 C 0.16 3.77 4.84 86.38 0.42 4.19 16 15 C -0.14 -1.93 1.79 -52.18 -0.09 -2.02 16 16 C 0.11 1.27 6.81 71.98 0.49 1.76 16 17 O -0.59 -9.14 13.56 -148.98 -2.02 -11.16 16 18 C -0.14 -1.49 9.29 30.62 0.28 -1.21 16 19 C -0.08 -0.78 5.73 -11.52 -0.07 -0.85 16 20 H 0.15 0.57 8.14 -2.39 -0.02 0.55 16 21 C -0.06 -0.95 5.05 -19.86 -0.10 -1.05 16 22 C -0.10 -1.84 7.35 22.26 0.16 -1.67 16 23 C -0.17 -3.86 10.03 22.31 0.22 -3.64 16 24 C 0.07 1.64 7.30 22.38 0.16 1.80 16 25 F -0.16 -4.44 17.27 44.97 0.78 -3.67 16 26 C -0.16 -3.02 10.03 22.31 0.22 -2.80 16 27 C -0.08 -1.10 9.73 22.26 0.22 -0.88 16 28 H 0.27 15.71 8.31 -92.71 -0.77 14.94 16 29 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 30 H 0.11 3.97 8.14 -2.39 -0.02 3.95 16 31 H 0.41 7.83 8.20 -92.71 -0.76 7.07 16 32 H 0.06 1.60 4.93 -2.39 -0.01 1.59 16 33 H 0.05 1.53 8.09 -2.39 -0.02 1.51 16 34 H 0.05 0.58 7.79 -2.38 -0.02 0.56 16 35 H 0.08 0.42 8.09 -2.39 -0.02 0.40 16 36 H 0.40 2.73 9.12 -74.06 -0.68 2.05 16 37 H 0.10 1.16 6.19 -2.39 -0.01 1.15 16 38 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.14 2.37 5.30 -2.91 -0.02 2.35 16 40 H 0.13 2.96 8.06 -2.92 -0.02 2.93 16 41 H 0.15 2.36 8.06 -2.91 -0.02 2.34 16 42 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 Total: -1.00 -84.41 374.29 1.16 -83.25 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: -0.36 Total: 20.18 kcal Atomic # 6 Polarization: -23.85 SS G_CDS: 4.16 Total: -19.69 kcal Atomic # 7 Polarization: -75.12 SS G_CDS: -2.22 Total: -77.34 kcal Atomic # 8 Polarization: -36.74 SS G_CDS: -2.07 Total: -38.81 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.78 Total: -3.67 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: -8.70 SS G_CDS: -1.16 Total: -9.86 kcal Total: -84.41 1.16 -83.25 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430124774.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.754 kcal (2) G-P(sol) polarization free energy of solvation -84.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds