Wall clock time and date at job start Tue Mar 31 2020 22:13:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00271 * 2 1 4 4 H 1.48500 * 109.47334 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47081 * 300.00121 * 3 2 1 6 6 H 1.48497 * 109.47275 * 60.00353 * 3 2 1 7 7 C 1.38803 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99769 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00135 * 0.02562 * 7 2 1 10 10 C 1.80999 * 99.99904 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47041 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00002 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00274 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00428 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47592 * 184.98887 * 14 13 11 16 16 C 1.53006 * 115.54951 * 279.60461 * 15 14 13 17 17 O 1.42904 * 109.46922 * 320.77807 * 16 15 14 18 18 C 1.53072 * 117.51721 * 133.87917 * 15 14 13 19 19 C 1.53000 * 59.98558 * 252.52487 * 18 15 14 20 20 H 1.08996 * 117.49976 * 107.49523 * 19 18 15 21 21 C 1.50703 * 117.49857 * 252.49915 * 19 18 15 22 22 C 1.38243 * 119.97263 * 188.74623 * 21 19 18 23 23 C 1.38201 * 120.02109 * 180.29541 * 22 21 19 24 24 C 1.38455 * 119.97573 * 359.44861 * 23 22 21 25 25 F 1.35097 * 120.02946 * 180.29772 * 24 23 22 26 26 C 1.38466 * 119.94584 * 0.55067 * 24 23 22 27 27 C 1.38187 * 119.97662 * 359.72307 * 26 24 23 28 28 H 0.97007 * 120.00103 * 359.97438 * 1 2 3 29 29 H 1.08991 * 109.47543 * 59.99774 * 10 9 7 30 30 H 1.09009 * 109.47142 * 299.99512 * 10 9 7 31 31 H 0.97002 * 119.99834 * 0.02562 * 13 11 10 32 32 H 1.09003 * 109.47239 * 64.98886 * 14 13 11 33 33 H 1.08997 * 109.47353 * 304.98978 * 14 13 11 34 34 H 1.08996 * 109.46975 * 80.78238 * 16 15 14 35 35 H 1.08998 * 109.46792 * 200.77930 * 16 15 14 36 36 H 0.96696 * 113.99285 * 180.02562 * 17 16 15 37 37 H 1.08997 * 117.51428 * 145.04338 * 18 15 14 38 38 H 1.09004 * 117.49152 * 0.02562 * 18 15 14 39 39 H 1.07996 * 119.99157 * 0.02562 * 22 21 19 40 40 H 1.07995 * 120.01017 * 179.72395 * 23 22 21 41 41 H 1.08004 * 120.01081 * 179.74909 * 26 24 23 42 42 H 1.08001 * 119.98868 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 -0.0001 12 8 0.7909 -5.5023 0.0000 13 7 2.8439 -6.3432 -0.0007 14 6 2.3301 -7.7151 -0.0008 15 6 3.4971 -8.6968 0.1239 16 6 4.2584 -8.9848 -1.1717 17 8 3.3337 -9.0743 -2.2576 18 6 3.3534 -9.8421 1.1292 19 6 4.3004 -8.6776 1.4259 20 1 3.9974 -7.9656 2.1936 21 6 5.7809 -8.9438 1.3341 22 6 6.6824 -7.9882 1.7643 23 6 8.0404 -8.2288 1.6749 24 6 8.4976 -9.4321 1.1649 25 9 9.8248 -9.6709 1.0827 26 6 7.5936 -10.3885 0.7344 27 6 6.2363 -10.1434 0.8195 28 1 -0.4850 0.8401 0.0004 29 1 3.1243 -3.7314 0.8904 30 1 3.1243 -3.7314 -0.8896 31 1 3.8007 -6.1836 -0.0004 32 1 1.7954 -7.9029 -0.9319 33 1 1.6513 -7.8490 0.8414 34 1 4.9672 -8.1793 -1.3633 35 1 4.7971 -9.9274 -1.0746 36 1 3.7476 -9.2562 -3.1124 37 1 3.8012 -10.8008 0.8677 38 1 2.4272 -9.8962 1.7014 39 1 6.3256 -7.0515 2.1663 40 1 8.7446 -7.4804 2.0069 41 1 7.9491 -11.3258 0.3326 42 1 5.5310 -10.8890 0.4833 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430124776.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:37 Heat of formation + Delta-G solvation = -83.349489 kcal Electronic energy + Delta-G solvation = -25902.324628 eV Core-core repulsion = 21888.800352 eV Total energy + Delta-G solvation = -4013.524276 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -49.27472 -40.66093 -39.08339 -38.03759 -36.21116 -33.96130 -32.41908 -31.64852 -30.89555 -29.49722 -27.45191 -25.94424 -25.35094 -24.32199 -23.23930 -21.28315 -20.22223 -19.60987 -18.13109 -17.88457 -17.66598 -16.92105 -16.34757 -16.24182 -15.97256 -15.78097 -15.22778 -15.17108 -14.79789 -14.78061 -14.18127 -14.02256 -13.89462 -13.74437 -13.45797 -13.26730 -12.98273 -12.83418 -12.72005 -12.54949 -12.00440 -11.76155 -11.43202 -11.32235 -11.06622 -11.00769 -10.84264 -10.79655 -10.74023 -10.11352 -9.78939 -9.56214 -9.33312 -9.06806 -8.88227 -8.74722 -8.20984 -6.48258 -6.20765 -3.90879 0.62284 0.76023 2.81908 3.08048 3.16048 3.22020 3.27825 3.31854 3.48182 3.76869 3.82943 3.87106 3.99168 4.21345 4.22388 4.41968 4.42411 4.57754 4.62048 4.75634 4.77422 4.95597 5.08113 5.14434 5.16746 5.23419 5.34492 5.45304 5.49103 5.50634 5.63705 5.67557 5.69987 5.79761 5.82224 5.92245 6.03616 6.08069 6.15801 6.41897 6.67320 7.33620 7.60730 7.77464 8.36350 8.67461 9.24648 10.86709 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012990 B = 0.002394 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.047173 B =11692.064393 C =13209.760562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.534 4.534 8 H 0.073 0.927 9 S -0.060 6.060 10 C -0.152 4.152 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.734 5.734 14 C 0.163 3.837 15 C -0.123 4.123 16 C 0.112 3.888 17 O -0.564 6.564 18 C -0.151 4.151 19 C -0.103 4.103 20 H 0.125 0.875 21 C -0.061 4.061 22 C -0.081 4.081 23 C -0.148 4.148 24 C 0.092 3.908 25 F -0.141 7.141 26 C -0.151 4.151 27 C -0.095 4.095 28 H 0.268 0.732 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.396 0.604 32 H 0.084 0.916 33 H 0.068 0.932 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.380 0.620 37 H 0.103 0.897 38 H 0.108 0.892 39 H 0.137 0.863 40 H 0.137 0.863 41 H 0.135 0.865 42 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.698 -24.009 1.389 29.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.303 4.303 11 C 0.317 3.683 12 O -0.393 6.393 13 N -0.388 5.388 14 C 0.039 3.961 15 C -0.124 4.124 16 C 0.035 3.965 17 O -0.369 6.369 18 C -0.188 4.188 19 C -0.121 4.121 20 H 0.143 0.857 21 C -0.061 4.061 22 C -0.099 4.099 23 C -0.167 4.167 24 C 0.073 3.927 25 F -0.120 7.120 26 C -0.170 4.170 27 C -0.113 4.113 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.107 0.893 31 H 0.229 0.771 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.228 0.772 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.155 0.845 40 H 0.155 0.845 41 H 0.153 0.847 42 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 14.139 -24.128 1.859 28.027 hybrid contribution 3.239 1.178 -0.415 3.472 sum 17.378 -22.950 1.444 28.823 Atomic orbital electron populations 1.70028 1.05946 1.27316 1.46982 1.24995 0.95026 0.99029 0.94591 0.86120 0.79575 0.81918 0.77889 1.19635 1.20582 1.20580 1.22909 0.94917 0.91677 1.58757 0.90925 1.85413 1.04987 0.96294 1.96692 1.23521 1.06490 0.95507 1.04786 1.20272 0.86524 0.86205 0.75269 1.90705 1.15366 1.85591 1.47588 1.45939 1.09762 1.05339 1.77796 1.20666 0.92982 0.79239 1.03193 1.21745 0.99494 1.01200 0.89917 1.21612 0.90062 0.99544 0.85308 1.86504 1.36529 1.95141 1.18720 1.23342 1.01234 0.92989 1.01231 1.21251 0.88794 1.03027 0.99023 0.85692 1.19198 0.93631 0.94154 0.99091 1.20919 0.91575 0.99297 0.98087 1.21193 0.96923 0.96506 1.02064 1.17759 0.77499 0.95556 1.01874 1.91507 1.31495 1.94748 1.94223 1.21119 0.93122 0.99747 1.02962 1.20971 0.94618 0.96974 0.98702 0.92252 0.89355 0.89346 0.77110 0.89834 0.91371 0.93155 0.93097 0.77237 0.87898 0.87406 0.84507 0.84489 0.84725 0.84823 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.24 13.22 55.49 0.73 -25.50 16 2 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 3 Si 0.92 21.42 29.55 -169.99 -5.02 16.40 16 4 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 5 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 6 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.53 -15.24 9.50 30.94 0.29 -14.95 16 8 H 0.07 1.96 7.80 -52.48 -0.41 1.55 16 9 S -0.06 -1.65 20.57 -107.50 -2.21 -3.86 16 10 C -0.15 -3.08 6.16 36.01 0.22 -2.86 16 11 C 0.53 10.00 7.85 -10.99 -0.09 9.92 16 12 O -0.52 -11.97 15.86 5.56 0.09 -11.88 16 13 N -0.73 -9.89 5.51 -60.30 -0.33 -10.22 16 14 C 0.16 1.99 5.47 -4.04 -0.02 1.97 16 15 C -0.12 -1.04 1.97 -154.47 -0.30 -1.34 16 16 C 0.11 0.86 6.06 37.16 0.23 1.09 16 17 O -0.56 -5.07 12.43 -35.23 -0.44 -5.51 16 18 C -0.15 -1.02 9.17 -26.69 -0.24 -1.26 16 19 C -0.10 -0.74 5.72 -91.77 -0.52 -1.26 16 20 H 0.13 0.94 8.14 -51.93 -0.42 0.52 16 21 C -0.06 -0.42 5.05 -104.61 -0.53 -0.95 16 22 C -0.08 -0.56 9.73 -39.59 -0.39 -0.95 16 23 C -0.15 -1.08 10.03 -39.51 -0.40 -1.48 16 24 C 0.09 0.74 7.30 -39.42 -0.29 0.45 16 25 F -0.14 -1.29 17.27 2.25 0.04 -1.25 16 26 C -0.15 -1.01 10.03 -39.52 -0.40 -1.40 16 27 C -0.09 -0.59 7.67 -39.60 -0.30 -0.89 16 28 H 0.27 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 30 H 0.09 1.66 8.14 -51.91 -0.42 1.24 16 31 H 0.40 4.28 8.48 -40.82 -0.35 3.93 16 32 H 0.08 1.20 7.10 -51.93 -0.37 0.83 16 33 H 0.07 0.88 7.94 -51.93 -0.41 0.47 16 34 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.31 5.62 -51.93 -0.29 0.01 16 36 H 0.38 1.81 9.12 45.56 0.42 2.22 16 37 H 0.10 0.54 6.12 -51.93 -0.32 0.23 16 38 H 0.11 0.72 8.08 -51.93 -0.42 0.30 16 39 H 0.14 0.80 8.06 -52.49 -0.42 0.37 16 40 H 0.14 0.83 8.06 -52.49 -0.42 0.40 16 41 H 0.13 0.67 8.06 -52.48 -0.42 0.25 16 42 H 0.13 0.62 5.16 -52.49 -0.27 0.35 16 LS Contribution 373.41 15.07 5.63 5.63 Total: -1.00 -36.02 373.41 -8.87 -44.89 By element: Atomic # 1 Polarization: 7.76 SS G_CDS: -4.52 Total: 3.25 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: -2.83 Total: -11.93 kcal Atomic # 7 Polarization: -36.12 SS G_CDS: 0.40 Total: -35.72 kcal Atomic # 8 Polarization: -17.04 SS G_CDS: -0.35 Total: -17.39 kcal Atomic # 9 Polarization: -1.29 SS G_CDS: 0.04 Total: -1.25 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: -1.65 SS G_CDS: -2.21 Total: -3.86 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -36.02 -8.87 -44.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430124776.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.459 kcal (2) G-P(sol) polarization free energy of solvation -36.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.868 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.891 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds