Wall clock time and date at job start Tue Mar 31 2020 22:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00271 * 2 1 4 4 H 1.48500 * 109.47334 * 180.02562 * 3 2 1 5 5 H 1.48504 * 109.47081 * 300.00121 * 3 2 1 6 6 H 1.48497 * 109.47275 * 60.00353 * 3 2 1 7 7 C 1.38803 * 119.99785 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99769 * 179.97438 * 7 2 1 9 9 S 1.76201 * 120.00135 * 0.02562 * 7 2 1 10 10 C 1.80999 * 99.99904 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47041 * 180.02562 * 10 9 7 12 12 O 1.21282 * 120.00002 * 359.97438 * 11 10 9 13 13 N 1.34770 * 120.00274 * 179.97438 * 11 10 9 14 14 C 1.46499 * 120.00428 * 179.97438 * 13 11 10 15 15 C 1.52998 * 109.47592 * 184.98887 * 14 13 11 16 16 C 1.53006 * 115.54951 * 279.60461 * 15 14 13 17 17 O 1.42904 * 109.46922 * 320.77807 * 16 15 14 18 18 C 1.53072 * 117.51721 * 133.87917 * 15 14 13 19 19 C 1.53000 * 59.98558 * 252.52487 * 18 15 14 20 20 H 1.08996 * 117.49976 * 107.49523 * 19 18 15 21 21 C 1.50703 * 117.49857 * 252.49915 * 19 18 15 22 22 C 1.38243 * 119.97263 * 188.74623 * 21 19 18 23 23 C 1.38201 * 120.02109 * 180.29541 * 22 21 19 24 24 C 1.38455 * 119.97573 * 359.44861 * 23 22 21 25 25 F 1.35097 * 120.02946 * 180.29772 * 24 23 22 26 26 C 1.38466 * 119.94584 * 0.55067 * 24 23 22 27 27 C 1.38187 * 119.97662 * 359.72307 * 26 24 23 28 28 H 0.97007 * 120.00103 * 359.97438 * 1 2 3 29 29 H 1.08991 * 109.47543 * 59.99774 * 10 9 7 30 30 H 1.09009 * 109.47142 * 299.99512 * 10 9 7 31 31 H 0.97002 * 119.99834 * 0.02562 * 13 11 10 32 32 H 1.09003 * 109.47239 * 64.98886 * 14 13 11 33 33 H 1.08997 * 109.47353 * 304.98978 * 14 13 11 34 34 H 1.08996 * 109.46975 * 80.78238 * 16 15 14 35 35 H 1.08998 * 109.46792 * 200.77930 * 16 15 14 36 36 H 0.96696 * 113.99285 * 180.02562 * 17 16 15 37 37 H 1.08997 * 117.51428 * 145.04338 * 18 15 14 38 38 H 1.09004 * 117.49152 * 0.02562 * 18 15 14 39 39 H 1.07996 * 119.99157 * 0.02562 * 22 21 19 40 40 H 1.07995 * 120.01017 * 179.72395 * 23 22 21 41 41 H 1.08004 * 120.01081 * 179.74909 * 26 24 23 42 42 H 1.08001 * 119.98868 * 179.97438 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 -0.0006 5 1 1.8915 2.3964 -1.2125 6 1 1.8917 2.3964 1.2125 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 16 1.1292 -2.7280 0.0005 10 6 2.5157 -3.8915 0.0005 11 6 1.9872 -5.3028 -0.0001 12 8 0.7909 -5.5023 0.0000 13 7 2.8439 -6.3432 -0.0007 14 6 2.3301 -7.7151 -0.0008 15 6 3.4971 -8.6968 0.1239 16 6 4.2584 -8.9848 -1.1717 17 8 3.3337 -9.0743 -2.2576 18 6 3.3534 -9.8421 1.1292 19 6 4.3004 -8.6776 1.4259 20 1 3.9974 -7.9656 2.1936 21 6 5.7809 -8.9438 1.3341 22 6 6.6824 -7.9882 1.7643 23 6 8.0404 -8.2288 1.6749 24 6 8.4976 -9.4321 1.1649 25 9 9.8248 -9.6709 1.0827 26 6 7.5936 -10.3885 0.7344 27 6 6.2363 -10.1434 0.8195 28 1 -0.4850 0.8401 0.0004 29 1 3.1243 -3.7314 0.8904 30 1 3.1243 -3.7314 -0.8896 31 1 3.8007 -6.1836 -0.0004 32 1 1.7954 -7.9029 -0.9319 33 1 1.6513 -7.8490 0.8414 34 1 4.9672 -8.1793 -1.3633 35 1 4.7971 -9.9274 -1.0746 36 1 3.7476 -9.2562 -3.1124 37 1 3.8012 -10.8008 0.8677 38 1 2.4272 -9.8962 1.7014 39 1 6.3256 -7.0515 2.1663 40 1 8.7446 -7.4804 2.0069 41 1 7.9491 -11.3258 0.3326 42 1 5.5310 -10.8890 0.4833 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430124776.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:13:36 Heat of formation + Delta-G solvation = -108.735579 kcal Electronic energy + Delta-G solvation = -25903.425451 eV Core-core repulsion = 21888.800352 eV Total energy + Delta-G solvation = -4014.625099 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.88995 -41.34359 -40.34435 -38.77885 -36.84742 -35.23065 -34.57708 -32.13679 -31.75002 -30.77269 -28.17507 -27.68885 -26.76358 -24.84984 -23.77057 -21.99277 -21.52967 -20.40273 -19.71065 -18.68008 -18.38561 -17.83024 -17.50801 -17.00911 -16.92651 -16.87021 -16.58518 -16.44145 -15.84213 -15.76846 -15.50907 -14.92997 -14.63700 -14.52468 -14.46420 -14.38501 -14.05475 -13.99472 -13.65710 -13.29820 -13.16674 -13.15162 -12.90507 -12.60944 -12.52172 -12.04648 -11.95171 -11.69402 -11.49382 -11.39501 -11.15354 -10.97861 -10.60800 -10.25981 -10.08413 -10.04878 -9.38939 -8.65938 -8.34114 -6.12014 0.08362 0.27528 1.27581 1.41921 1.47649 1.58679 1.63960 2.15483 2.27898 2.46579 2.97030 3.00111 3.22011 3.30347 3.34037 3.40472 3.71372 3.82837 3.84268 3.94512 4.00348 4.08588 4.18718 4.30069 4.30725 4.43507 4.51140 4.57036 4.60758 4.74694 4.82860 4.95078 4.97541 5.00294 5.06945 5.14223 5.19222 5.30305 5.42686 5.44390 5.56017 5.91388 6.20743 6.52111 6.92975 7.07274 7.26563 8.75388 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012990 B = 0.002394 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.047173 B =11692.064393 C =13209.760562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.012 3.988 3 Si 1.000 3.000 4 H -0.256 1.256 5 H -0.275 1.275 6 H -0.274 1.274 7 C -0.544 4.544 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.128 4.128 11 C 0.533 3.467 12 O -0.568 6.568 13 N -0.706 5.706 14 C 0.165 3.835 15 C -0.132 4.132 16 C 0.113 3.887 17 O -0.588 6.588 18 C -0.140 4.140 19 C -0.093 4.093 20 H 0.122 0.878 21 C -0.063 4.063 22 C -0.087 4.087 23 C -0.155 4.155 24 C 0.072 3.928 25 F -0.152 7.152 26 C -0.151 4.151 27 C -0.091 4.091 28 H 0.271 0.729 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.412 0.588 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.049 0.951 35 H 0.073 0.927 36 H 0.397 0.603 37 H 0.124 0.876 38 H 0.108 0.892 39 H 0.146 0.854 40 H 0.144 0.856 41 H 0.151 0.849 42 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.157 -24.895 1.507 31.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.193 4.193 3 Si 0.821 3.179 4 H -0.180 1.180 5 H -0.200 1.200 6 H -0.199 1.199 7 C -0.692 4.692 8 H 0.101 0.899 9 S 0.075 5.925 10 C -0.279 4.279 11 C 0.319 3.681 12 O -0.446 6.446 13 N -0.359 5.359 14 C 0.042 3.958 15 C -0.133 4.133 16 C 0.036 3.964 17 O -0.396 6.396 18 C -0.177 4.177 19 C -0.111 4.111 20 H 0.140 0.860 21 C -0.063 4.063 22 C -0.105 4.105 23 C -0.174 4.174 24 C 0.053 3.947 25 F -0.131 7.131 26 C -0.169 4.169 27 C -0.109 4.109 28 H 0.080 0.920 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.249 0.751 32 H 0.080 0.920 33 H 0.078 0.922 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.247 0.753 37 H 0.142 0.858 38 H 0.126 0.874 39 H 0.164 0.836 40 H 0.162 0.838 41 H 0.168 0.832 42 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 16.661 -25.054 1.968 30.153 hybrid contribution 2.509 1.311 -0.455 2.867 sum 19.169 -23.743 1.512 30.553 Atomic orbital electron populations 1.70192 1.07992 1.28528 1.48110 1.26140 0.95974 1.03352 0.93791 0.84895 0.78625 0.76303 0.78047 1.17969 1.20011 1.19921 1.23230 0.95326 0.91944 1.58686 0.89901 1.85607 1.10623 0.99264 1.97034 1.23358 1.03493 0.94342 1.06715 1.20064 0.86210 0.86659 0.75196 1.90693 1.17481 1.86120 1.50341 1.45681 1.10009 1.04943 1.75261 1.20662 0.94585 0.78902 1.01689 1.21611 0.98902 1.01497 0.91289 1.21679 0.89642 1.00633 0.84454 1.86466 1.37827 1.95291 1.20049 1.23488 1.01243 0.93401 0.99615 1.21189 0.89038 1.03199 0.97684 0.86029 1.19222 0.93225 0.94542 0.99335 1.21071 0.91451 0.99828 0.98111 1.21336 0.97357 0.96626 1.02092 1.18048 0.77302 0.96419 1.02958 1.91476 1.32354 1.94866 1.94430 1.21332 0.93148 1.00042 1.02402 1.21160 0.94711 0.97007 0.98001 0.92013 0.87056 0.87488 0.75127 0.92038 0.92220 0.93247 0.90897 0.75348 0.85762 0.87368 0.83614 0.83827 0.83158 0.82888 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.22 13.22 21.65 0.29 -55.93 16 2 C 0.01 0.69 5.49 84.86 0.47 1.15 16 3 Si 1.00 43.60 29.55 68.60 2.03 45.62 16 4 H -0.26 -10.39 7.11 99.48 0.71 -9.69 16 5 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 6 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 7 C -0.54 -31.09 9.50 67.96 0.65 -30.44 16 8 H 0.08 4.39 7.80 -2.91 -0.02 4.37 16 9 S -0.15 -8.52 20.57 -56.49 -1.16 -9.68 16 10 C -0.13 -5.08 6.16 71.24 0.44 -4.64 16 11 C 0.53 19.96 7.85 87.66 0.69 20.64 16 12 O -0.57 -26.94 15.86 -3.04 -0.05 -26.99 16 13 N -0.71 -18.16 5.51 -463.07 -2.55 -20.72 16 14 C 0.16 3.90 5.47 86.38 0.47 4.37 16 15 C -0.13 -1.95 1.97 -52.15 -0.10 -2.06 16 16 C 0.11 1.45 6.06 71.98 0.44 1.89 16 17 O -0.59 -9.61 12.43 -148.98 -1.85 -11.47 16 18 C -0.14 -1.51 9.17 30.62 0.28 -1.23 16 19 C -0.09 -1.09 5.72 -11.54 -0.07 -1.16 16 20 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 21 C -0.06 -0.70 5.05 -19.86 -0.10 -0.80 16 22 C -0.09 -1.02 9.73 22.26 0.22 -0.81 16 23 C -0.16 -2.04 10.03 22.31 0.22 -1.81 16 24 C 0.07 1.04 7.30 22.38 0.16 1.21 16 25 F -0.15 -2.66 17.27 44.97 0.78 -1.88 16 26 C -0.15 -1.64 10.03 22.31 0.22 -1.41 16 27 C -0.09 -0.84 7.67 22.26 0.17 -0.67 16 28 H 0.27 15.45 8.31 -92.70 -0.77 14.68 16 29 H 0.11 3.91 8.14 -2.40 -0.02 3.89 16 30 H 0.11 3.86 8.14 -2.39 -0.02 3.84 16 31 H 0.41 7.98 8.48 -92.71 -0.79 7.19 16 32 H 0.06 1.78 7.10 -2.39 -0.02 1.76 16 33 H 0.06 1.53 7.94 -2.39 -0.02 1.51 16 34 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.07 0.61 5.62 -2.39 -0.01 0.60 16 36 H 0.40 3.10 9.12 -74.06 -0.68 2.42 16 37 H 0.12 0.82 6.12 -2.39 -0.01 0.80 16 38 H 0.11 1.20 8.08 -2.39 -0.02 1.18 16 39 H 0.15 1.38 8.06 -2.91 -0.02 1.36 16 40 H 0.14 1.57 8.06 -2.91 -0.02 1.55 16 41 H 0.15 1.09 8.06 -2.91 -0.02 1.07 16 42 H 0.15 0.77 5.16 -2.91 -0.02 0.75 16 Total: -1.00 -80.44 373.41 1.25 -79.18 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: -0.38 Total: 17.61 kcal Atomic # 6 Polarization: -19.91 SS G_CDS: 4.16 Total: -15.75 kcal Atomic # 7 Polarization: -74.38 SS G_CDS: -2.27 Total: -76.65 kcal Atomic # 8 Polarization: -36.55 SS G_CDS: -1.90 Total: -38.45 kcal Atomic # 9 Polarization: -2.66 SS G_CDS: 0.78 Total: -1.88 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.62 kcal Atomic # 16 Polarization: -8.52 SS G_CDS: -1.16 Total: -9.68 kcal Total: -80.44 1.25 -79.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430124776.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.551 kcal (2) G-P(sol) polarization free energy of solvation -80.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.251 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds