Wall clock time and date at job start Tue Mar 31 2020 22:31:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86798 * 120.00088 * 2 1 4 4 H 1.48509 * 109.47390 * 270.00205 * 3 2 1 5 5 H 1.48494 * 109.47265 * 29.99870 * 3 2 1 6 6 H 1.48496 * 109.47254 * 150.00306 * 3 2 1 7 7 C 1.37877 * 120.00206 * 180.02562 * 2 1 3 8 8 H 1.07992 * 120.00436 * 173.55324 * 7 2 1 9 9 C 1.50702 * 119.99476 * 353.54791 * 7 2 1 10 10 C 1.53002 * 115.55051 * 85.40888 * 9 7 2 11 11 N 1.46505 * 109.46923 * 65.14081 * 10 9 7 12 12 C 1.34770 * 119.99759 * 178.28736 * 11 10 9 13 13 O 1.21586 * 120.00448 * 0.02562 * 12 11 10 14 14 N 1.34778 * 120.00043 * 179.97438 * 12 11 10 15 15 C 1.46500 * 120.00316 * 179.97438 * 14 12 11 16 16 C 1.52998 * 109.47216 * 180.02562 * 15 14 12 17 17 O 1.42898 * 109.46950 * 65.00405 * 16 15 14 18 18 C 1.35702 * 116.99886 * 180.02562 * 17 16 15 19 19 N 1.32253 * 119.69372 * 0.02562 * 18 17 16 20 20 C 1.31942 * 121.66086 * 180.02562 * 19 18 17 21 21 C 1.38078 * 120.86308 * 359.97438 * 20 19 18 22 22 C 1.38791 * 119.29149 * 0.25422 * 21 20 19 23 23 C 1.38499 * 118.47660 * 359.52799 * 22 21 20 24 24 Cl 1.73602 * 120.45677 * 180.22161 * 23 22 21 25 25 C 1.53000 * 117.49998 * 231.07708 * 9 7 2 26 26 C 1.53002 * 117.50125 * 299.73592 * 9 7 2 27 27 H 0.97006 * 120.00115 * 5.06816 * 1 2 3 28 28 H 1.08997 * 109.47403 * 305.14151 * 10 9 7 29 29 H 1.09001 * 109.47228 * 185.13849 * 10 9 7 30 30 H 0.97002 * 119.99882 * 358.29010 * 11 10 9 31 31 H 0.97002 * 119.99598 * 0.02562 * 14 12 11 32 32 H 1.09003 * 109.46645 * 60.00580 * 15 14 12 33 33 H 1.08999 * 109.47490 * 300.00871 * 15 14 12 34 34 H 1.09002 * 109.47076 * 305.00512 * 16 15 14 35 35 H 1.09002 * 109.47315 * 185.00331 * 16 15 14 36 36 H 1.08008 * 119.56867 * 180.02562 * 20 19 18 37 37 H 1.07994 * 120.35658 * 179.97438 * 21 20 19 38 38 H 1.08006 * 120.75810 * 179.74551 * 22 21 20 39 39 H 1.08994 * 117.50368 * 215.00659 * 25 9 7 40 40 H 1.09007 * 117.49388 * 0.02562 * 25 9 7 41 41 H 1.08998 * 117.49420 * 359.97438 * 26 9 7 42 42 H 1.09000 * 117.49827 * 144.97296 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4401 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0794 -1.1970 -0.1055 9 6 1.2581 -2.4950 0.1456 10 6 0.7020 -3.0860 -1.1515 11 7 1.8111 -3.4584 -2.0334 12 6 1.5598 -4.0347 -3.2255 13 8 0.4127 -4.2451 -3.5694 14 7 2.5800 -4.3769 -4.0370 15 6 2.3070 -5.0038 -5.3326 16 6 3.6280 -5.2891 -6.0497 17 8 4.3718 -6.2592 -5.3097 18 6 5.5776 -6.6260 -5.8128 19 7 6.0089 -6.0855 -6.9402 20 6 7.1744 -6.4140 -7.4642 21 6 7.9918 -7.3410 -6.8485 22 6 7.5741 -7.9353 -5.6659 23 6 6.3478 -7.5661 -5.1385 24 17 5.7775 -8.2728 -3.6589 25 6 1.7470 -3.4738 1.2151 26 6 0.4418 -2.7016 1.4230 27 1 -0.4850 0.8368 -0.0742 28 1 0.0753 -2.3457 -1.6488 29 1 0.1074 -3.9703 -0.9223 30 1 2.7262 -3.2903 -1.7592 31 1 3.4952 -4.2087 -3.7628 32 1 1.7008 -4.3321 -5.9406 33 1 1.7687 -5.9388 -5.1776 34 1 4.2065 -4.3683 -6.1256 35 1 3.4235 -5.6731 -7.0491 36 1 7.4936 -5.9511 -8.3864 37 1 8.9440 -7.6041 -7.2848 38 1 8.1927 -8.6663 -5.1665 39 1 1.6725 -4.5386 0.9948 40 1 2.6083 -3.1764 1.8134 41 1 0.4450 -1.8967 2.1579 42 1 -0.4917 -3.2581 1.3392 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430858000.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:18 Heat of formation + Delta-G solvation = -11.935925 kcal Electronic energy + Delta-G solvation = -26032.358944 eV Core-core repulsion = 22039.807648 eV Total energy + Delta-G solvation = -3992.551296 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.06975 -39.41167 -38.39050 -36.86626 -36.73392 -34.55261 -33.18732 -32.80947 -31.94542 -31.05641 -29.30691 -26.14521 -25.14494 -24.35502 -23.70965 -22.28169 -21.16742 -20.29776 -19.34901 -18.98810 -17.85196 -17.40177 -16.82193 -16.62674 -16.18956 -15.50922 -15.40434 -15.00960 -14.64869 -14.28579 -14.22715 -13.90360 -13.83412 -13.51099 -13.25060 -12.85319 -12.74654 -12.60809 -12.33778 -11.89768 -11.69547 -11.52901 -11.41446 -11.30466 -10.98425 -10.90429 -10.50846 -10.23436 -10.18712 -10.16111 -9.71060 -9.48533 -8.93693 -8.83521 -8.81617 -8.46741 -8.21848 -7.91968 -6.05190 -4.13607 0.48759 0.70643 1.75693 2.53006 3.18166 3.24982 3.26937 3.34721 3.36626 3.82222 3.86362 4.25845 4.37023 4.40941 4.54939 4.70675 4.81336 4.84362 4.99714 5.17485 5.23025 5.31062 5.40630 5.50258 5.57805 5.78262 5.85688 6.07482 6.38702 6.51327 6.64598 6.72503 6.74033 6.81590 6.89724 7.12494 7.27241 7.37922 7.45193 7.51054 7.64126 7.83870 8.37481 8.70846 8.87085 9.25354 9.52828 11.02651 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.013812 B = 0.002385 C = 0.002342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.777998 B =11739.225065 C =11951.872593 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.500 4.500 8 H 0.059 0.941 9 C 0.028 3.972 10 C 0.182 3.818 11 N -0.720 5.720 12 C 0.699 3.301 13 O -0.605 6.605 14 N -0.752 5.752 15 C 0.144 3.856 16 C 0.059 3.941 17 O -0.288 6.288 18 C 0.338 3.662 19 N -0.527 5.527 20 C 0.144 3.856 21 C -0.203 4.203 22 C -0.033 4.033 23 C -0.113 4.113 24 Cl -0.038 7.038 25 C -0.210 4.210 26 C -0.148 4.148 27 H 0.261 0.739 28 H 0.070 0.930 29 H 0.034 0.966 30 H 0.396 0.604 31 H 0.396 0.604 32 H 0.088 0.912 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.167 0.833 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.065 0.935 40 H 0.077 0.923 41 H 0.083 0.917 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.562 -15.456 -14.757 27.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.027 3.973 10 C 0.059 3.941 11 N -0.372 5.372 12 C 0.399 3.601 13 O -0.485 6.485 14 N -0.410 5.410 15 C 0.019 3.981 16 C -0.016 4.016 17 O -0.194 6.194 18 C 0.158 3.842 19 N -0.251 5.251 20 C -0.012 4.012 21 C -0.224 4.224 22 C -0.059 4.059 23 C -0.143 4.143 24 Cl -0.009 7.009 25 C -0.248 4.248 26 C -0.186 4.186 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.053 0.947 30 H 0.229 0.771 31 H 0.229 0.771 32 H 0.106 0.894 33 H 0.092 0.908 34 H 0.095 0.905 35 H 0.103 0.897 36 H 0.184 0.816 37 H 0.164 0.836 38 H 0.168 0.832 39 H 0.084 0.916 40 H 0.096 0.904 41 H 0.102 0.898 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 14.532 -15.028 -15.015 25.739 hybrid contribution 1.783 0.598 0.559 1.962 sum 16.316 -14.430 -14.456 26.142 Atomic orbital electron populations 1.69978 1.05879 1.26883 1.48275 1.24984 0.94794 0.98911 0.94348 0.86637 0.79923 0.83606 0.78110 1.20704 1.21178 1.19853 1.20334 0.92792 0.88653 1.51962 0.92269 1.19038 0.98577 0.93867 0.85778 1.20847 0.86629 0.96644 0.90022 1.45130 1.11306 1.63619 1.17111 1.16002 0.84468 0.78807 0.80815 1.90869 1.19850 1.62059 1.75680 1.45015 1.08690 1.67862 1.19436 1.21174 0.93870 0.98755 0.84291 1.23081 0.91789 0.91306 0.95462 1.86405 1.26108 1.57900 1.49006 1.19561 0.86405 0.89673 0.88531 1.67555 1.18162 1.28229 1.11160 1.22581 0.87642 0.92756 0.98234 1.22006 1.02721 1.00572 0.97097 1.21435 0.92684 0.97244 0.94566 1.20964 0.97117 1.02107 0.94085 1.98412 1.88790 1.82312 1.31376 1.23017 0.98602 0.95717 1.07444 1.22490 0.92306 1.01073 1.02716 0.92864 0.91217 0.94731 0.77093 0.77092 0.89366 0.90770 0.90451 0.89733 0.81639 0.83638 0.83178 0.91629 0.90431 0.89843 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.55 12.91 55.43 0.72 -23.84 16 2 C 0.07 1.98 5.39 -17.82 -0.10 1.88 16 3 Si 0.89 20.73 29.55 -169.99 -5.02 15.71 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 7 C -0.50 -13.02 8.63 -34.44 -0.30 -13.31 16 8 H 0.06 1.51 7.82 -52.49 -0.41 1.10 16 9 C 0.03 0.68 1.38 -155.66 -0.21 0.46 16 10 C 0.18 4.28 5.50 -4.04 -0.02 4.26 16 11 N -0.72 -14.58 5.48 -65.22 -0.36 -14.94 16 12 C 0.70 13.83 8.57 -86.92 -0.74 13.08 16 13 O -0.60 -14.23 16.34 5.29 0.09 -14.14 16 14 N -0.75 -11.18 5.51 -65.23 -0.36 -11.54 16 15 C 0.14 1.78 6.06 -4.04 -0.02 1.75 16 16 C 0.06 0.59 5.44 37.16 0.20 0.79 16 17 O -0.29 -3.30 9.53 -18.81 -0.18 -3.48 16 18 C 0.34 3.59 7.49 -17.09 -0.13 3.47 16 19 N -0.53 -4.99 9.22 -13.30 -0.12 -5.11 16 20 C 0.14 0.93 11.17 -17.56 -0.20 0.74 16 21 C -0.20 -1.08 10.11 -39.44 -0.40 -1.48 16 22 C -0.03 -0.22 9.97 -39.28 -0.39 -0.61 16 23 C -0.11 -1.08 6.36 -39.21 -0.25 -1.33 16 24 Cl -0.04 -0.39 28.54 -51.86 -1.48 -1.87 16 25 C -0.21 -4.48 9.96 -26.69 -0.27 -4.74 16 26 C -0.15 -3.43 9.42 -26.69 -0.25 -3.68 16 27 H 0.26 7.06 8.32 -40.82 -0.34 6.72 16 28 H 0.07 1.87 8.14 -51.93 -0.42 1.45 16 29 H 0.03 0.81 8.09 -51.93 -0.42 0.39 16 30 H 0.40 7.34 8.38 -40.82 -0.34 7.00 16 31 H 0.40 5.12 8.49 -40.82 -0.35 4.78 16 32 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 33 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 35 H 0.08 0.73 8.11 -51.93 -0.42 0.31 16 36 H 0.17 0.56 8.06 -52.48 -0.42 0.14 16 37 H 0.15 0.33 8.06 -52.49 -0.42 -0.09 16 38 H 0.15 0.65 8.06 -52.48 -0.42 0.23 16 39 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 40 H 0.08 1.61 8.14 -51.93 -0.42 1.19 16 41 H 0.08 2.05 8.14 -51.93 -0.42 1.63 16 42 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 LS Contribution 382.31 15.07 5.76 5.76 Total: -1.00 -32.47 382.31 -9.76 -42.23 By element: Atomic # 1 Polarization: 15.69 SS G_CDS: -5.72 Total: 9.97 kcal Atomic # 6 Polarization: 4.34 SS G_CDS: -3.08 Total: 1.26 kcal Atomic # 7 Polarization: -55.31 SS G_CDS: -0.12 Total: -55.43 kcal Atomic # 8 Polarization: -17.53 SS G_CDS: -0.09 Total: -17.62 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.48 Total: -1.87 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -32.47 -9.76 -42.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430858000.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.293 kcal (2) G-P(sol) polarization free energy of solvation -32.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.936 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds