Wall clock time and date at job start Tue Mar 31 2020 22:35:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00047 * 2 1 4 4 H 1.48494 * 109.47052 * 239.99926 * 3 2 1 5 5 H 1.48500 * 109.47055 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47106 * 119.99366 * 3 2 1 7 7 C 1.37875 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99720 * 175.14336 * 7 2 1 9 9 C 1.50694 * 120.00314 * 355.42420 * 7 2 1 10 10 C 1.52992 * 115.55114 * 274.92789 * 9 7 2 11 11 N 1.46495 * 109.47269 * 294.81128 * 10 9 7 12 12 C 1.34782 * 120.00258 * 184.79147 * 11 10 9 13 13 O 1.21582 * 119.99693 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00034 * 180.02562 * 12 11 10 15 15 C 1.46497 * 120.00194 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47267 * 180.02562 * 15 14 12 17 17 O 1.42900 * 109.47309 * 65.00365 * 16 15 14 18 18 C 1.35691 * 117.00078 * 180.02562 * 17 16 15 19 19 C 1.38909 * 119.67130 * 179.72104 * 18 17 16 20 20 C 1.38379 * 119.12610 * 179.78924 * 19 18 17 21 21 C 1.38927 * 118.47470 * 0.47876 * 20 19 18 22 22 Cl 1.73599 * 120.37005 * 179.76702 * 21 20 19 23 23 C 1.38151 * 119.26077 * 359.74401 * 21 20 19 24 24 N 1.31972 * 120.82008 * 0.02562 * 23 21 20 25 25 C 1.53003 * 117.49968 * 129.25534 * 9 7 2 26 26 C 1.53006 * 117.49603 * 60.59599 * 9 7 2 27 27 H 0.97001 * 119.99960 * 5.00103 * 1 2 3 28 28 H 1.09001 * 109.47339 * 54.81686 * 10 9 7 29 29 H 1.09007 * 109.46904 * 174.81223 * 10 9 7 30 30 H 0.96999 * 120.00105 * 4.80424 * 11 10 9 31 31 H 0.97004 * 120.00199 * 0.02562 * 14 12 11 32 32 H 1.09007 * 109.47147 * 300.00790 * 15 14 12 33 33 H 1.09003 * 109.46836 * 59.99708 * 15 14 12 34 34 H 1.09007 * 109.46564 * 184.99907 * 16 15 14 35 35 H 1.08996 * 109.47273 * 304.99631 * 16 15 14 36 36 H 1.07996 * 120.44030 * 0.02876 * 19 18 17 37 37 H 1.07996 * 120.76506 * 180.22625 * 20 19 18 38 38 H 1.08000 * 119.59141 * 180.02562 * 23 21 20 39 39 H 1.09003 * 117.50034 * 359.97438 * 25 9 7 40 40 H 1.09002 * 117.49971 * 145.02730 * 25 9 7 41 41 H 1.08996 * 117.49810 * 214.97781 * 26 9 7 42 42 H 1.08995 * 117.50078 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0816 -1.1957 -0.0787 9 6 1.2546 -2.4970 0.1052 10 6 0.9188 -2.9527 1.5266 11 7 2.1578 -3.2464 2.2508 12 6 2.1052 -3.7590 3.4962 13 8 1.0293 -3.9781 4.0184 14 7 3.2451 -4.0287 4.1627 15 6 3.1879 -4.5864 5.5162 16 6 4.6093 -4.7963 6.0419 17 8 5.2572 -3.5303 6.1818 18 6 6.5342 -3.5391 6.6404 19 6 7.2187 -2.3399 6.7921 20 6 8.5191 -2.3618 7.2648 21 6 9.0956 -3.5906 7.5612 22 17 10.7259 -3.6756 8.1514 23 6 8.3567 -4.7440 7.3815 24 7 7.1167 -4.6897 6.9332 25 6 1.5730 -3.5803 -0.9273 26 6 0.2453 -2.8218 -0.9979 27 1 -0.4850 0.8369 -0.0732 28 1 0.3749 -2.1616 2.0428 29 1 0.3013 -3.8500 1.4840 30 1 3.0162 -3.0718 1.8342 31 1 4.1035 -3.8536 3.7463 32 1 2.6567 -3.8961 6.1715 33 1 2.6637 -5.5419 5.4936 34 1 4.5685 -5.2927 7.0115 35 1 5.1686 -5.4151 5.3402 36 1 6.7410 -1.4026 6.5481 37 1 9.0745 -1.4450 7.3963 38 1 8.7995 -5.7021 7.6106 39 1 2.3246 -3.3504 -1.6826 40 1 1.5428 -4.6177 -0.5940 41 1 -0.6578 -3.3605 -0.7110 42 1 0.1233 -2.0928 -1.7990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000430866598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:13 Heat of formation + Delta-G solvation = -14.367607 kcal Electronic energy + Delta-G solvation = -25706.613936 eV Core-core repulsion = 21713.957194 eV Total energy + Delta-G solvation = -3992.656742 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.10261 -39.47769 -38.49329 -36.95329 -36.73547 -34.59314 -33.24678 -33.02524 -31.94942 -30.98778 -29.32476 -26.20187 -25.16322 -24.46567 -23.66113 -22.35193 -21.16173 -20.35504 -19.38423 -19.00089 -17.88878 -17.42707 -16.98849 -16.64046 -16.22325 -15.48714 -15.32147 -14.98755 -14.64205 -14.40068 -14.30566 -13.99272 -13.84129 -13.58392 -13.32362 -12.99466 -12.89426 -12.61112 -12.41408 -11.87309 -11.74188 -11.67542 -11.55306 -11.21764 -10.96321 -10.94857 -10.54114 -10.40938 -10.22363 -10.18165 -9.74871 -9.45576 -9.03080 -8.89071 -8.85102 -8.47063 -8.22855 -7.97962 -6.06072 -4.15823 0.52017 0.63183 1.59289 2.58336 3.15314 3.19176 3.27239 3.33300 3.34349 3.74671 3.79316 4.22764 4.35644 4.42430 4.46597 4.66617 4.76718 4.94364 5.08984 5.14731 5.21802 5.23279 5.39234 5.42390 5.52885 5.73165 5.80935 6.04960 6.36396 6.49350 6.60595 6.68211 6.72190 6.79143 6.86320 7.13599 7.24772 7.32238 7.43175 7.45550 7.62160 7.82081 8.35403 8.64799 8.85078 9.18716 9.51055 11.01127 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012992 B = 0.002153 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.583408 B =12999.726595 C =14342.824741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.073 3.927 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.499 4.499 8 H 0.058 0.942 9 C 0.024 3.976 10 C 0.182 3.818 11 N -0.720 5.720 12 C 0.699 3.301 13 O -0.605 6.605 14 N -0.753 5.753 15 C 0.143 3.857 16 C 0.059 3.941 17 O -0.294 6.294 18 C 0.331 3.669 19 C -0.176 4.176 20 C -0.030 4.030 21 C -0.133 4.133 22 Cl -0.057 7.057 23 C 0.157 3.843 24 N -0.527 5.527 25 C -0.211 4.211 26 C -0.142 4.142 27 H 0.262 0.738 28 H 0.065 0.935 29 H 0.038 0.962 30 H 0.397 0.603 31 H 0.396 0.604 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.085 0.915 35 H 0.077 0.923 36 H 0.154 0.846 37 H 0.152 0.848 38 H 0.168 0.832 39 H 0.077 0.923 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.350 -8.520 15.330 25.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.131 4.131 3 Si 0.719 3.281 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.023 3.977 10 C 0.058 3.942 11 N -0.372 5.372 12 C 0.398 3.602 13 O -0.484 6.484 14 N -0.411 5.411 15 C 0.018 3.982 16 C -0.017 4.017 17 O -0.200 6.200 18 C 0.152 3.848 19 C -0.197 4.197 20 C -0.056 4.056 21 C -0.162 4.162 22 Cl -0.028 7.028 23 C 0.000 4.000 24 N -0.251 5.251 25 C -0.248 4.248 26 C -0.180 4.180 27 H 0.072 0.928 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.230 0.770 31 H 0.229 0.771 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.103 0.897 35 H 0.095 0.905 36 H 0.172 0.828 37 H 0.170 0.830 38 H 0.185 0.815 39 H 0.095 0.905 40 H 0.083 0.917 41 H 0.082 0.918 42 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 16.594 -9.134 15.710 24.609 hybrid contribution 1.860 1.695 -0.246 2.528 sum 18.454 -7.440 15.464 25.199 Atomic orbital electron populations 1.69976 1.05866 1.26961 1.48245 1.24986 0.94825 0.98937 0.94347 0.86689 0.79654 0.83227 0.78577 1.20334 1.21288 1.20163 1.20294 0.92531 0.88606 1.52277 0.92337 1.19054 0.99386 0.93274 0.85992 1.20854 0.83250 0.97705 0.92341 1.45152 1.11297 1.66582 1.14190 1.16019 0.83787 0.78743 0.81615 1.90871 1.27851 1.60717 1.69010 1.45029 1.07941 1.71192 1.16912 1.21189 0.93421 1.00307 0.83292 1.23064 0.92589 0.83505 1.02495 1.86365 1.21652 1.33436 1.78575 1.19962 0.85381 0.89642 0.89768 1.21167 0.94561 0.98387 1.05574 1.21371 0.93674 0.97428 0.93138 1.21826 0.89276 0.96154 1.08983 1.98381 1.18880 1.98654 1.86911 1.22395 0.87826 0.97674 0.92107 1.67525 1.12199 1.27905 1.17498 1.23013 1.00691 0.95605 1.05501 1.22465 0.90801 1.01305 1.03414 0.92818 0.91718 0.94390 0.76981 0.77071 0.90698 0.89415 0.89721 0.90518 0.82831 0.83034 0.81479 0.90464 0.91731 0.91789 0.89523 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.30 12.65 55.43 0.70 -23.60 16 2 C 0.07 1.94 5.43 -17.82 -0.10 1.85 16 3 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 4 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 5 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.50 -12.83 8.59 -34.44 -0.30 -13.13 16 8 H 0.06 1.47 7.82 -52.48 -0.41 1.06 16 9 C 0.02 0.56 1.47 -155.66 -0.23 0.33 16 10 C 0.18 4.18 5.50 -4.05 -0.02 4.16 16 11 N -0.72 -14.14 5.48 -65.23 -0.36 -14.50 16 12 C 0.70 13.33 8.57 -86.91 -0.74 12.59 16 13 O -0.60 -13.83 16.34 5.29 0.09 -13.75 16 14 N -0.75 -10.62 5.51 -65.22 -0.36 -10.98 16 15 C 0.14 1.66 6.06 -4.05 -0.02 1.64 16 16 C 0.06 0.55 5.44 37.16 0.20 0.75 16 17 O -0.29 -3.16 10.06 -18.78 -0.19 -3.35 16 18 C 0.33 3.30 7.49 -17.13 -0.13 3.17 16 19 C -0.18 -1.46 10.04 -39.28 -0.39 -1.86 16 20 C -0.03 -0.21 9.97 -39.27 -0.39 -0.60 16 21 C -0.13 -0.98 6.34 -39.36 -0.25 -1.23 16 22 Cl -0.06 -0.38 28.99 -51.86 -1.50 -1.88 16 23 C 0.16 1.21 10.98 -17.52 -0.19 1.01 16 24 N -0.53 -5.00 9.21 -13.30 -0.12 -5.12 16 25 C -0.21 -4.41 9.96 -26.69 -0.27 -4.67 16 26 C -0.14 -3.26 9.14 -26.69 -0.24 -3.51 16 27 H 0.26 7.02 8.32 -40.82 -0.34 6.68 16 28 H 0.06 1.70 8.14 -51.93 -0.42 1.27 16 29 H 0.04 0.87 8.09 -51.92 -0.42 0.45 16 30 H 0.40 7.11 8.34 -40.82 -0.34 6.77 16 31 H 0.40 4.78 8.49 -40.82 -0.35 4.43 16 32 H 0.07 0.96 8.14 -51.92 -0.42 0.54 16 33 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.08 0.68 8.11 -51.93 -0.42 0.26 16 35 H 0.08 0.67 8.10 -51.93 -0.42 0.25 16 36 H 0.15 1.11 8.06 -52.49 -0.42 0.68 16 37 H 0.15 0.72 8.06 -52.49 -0.42 0.29 16 38 H 0.17 0.89 8.06 -52.49 -0.42 0.47 16 39 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 40 H 0.06 1.24 8.14 -51.93 -0.42 0.82 16 41 H 0.06 1.40 8.14 -51.93 -0.42 0.98 16 42 H 0.09 2.13 8.14 -51.93 -0.42 1.71 16 LS Contribution 382.52 15.07 5.76 5.76 Total: -1.00 -31.32 382.52 -9.80 -41.12 By element: Atomic # 1 Polarization: 15.97 SS G_CDS: -5.72 Total: 10.25 kcal Atomic # 6 Polarization: 3.58 SS G_CDS: -3.08 Total: 0.50 kcal Atomic # 7 Polarization: -54.06 SS G_CDS: -0.14 Total: -54.20 kcal Atomic # 8 Polarization: -16.99 SS G_CDS: -0.10 Total: -17.10 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Atomic # 17 Polarization: -0.38 SS G_CDS: -1.50 Total: -1.88 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.32 -9.80 -41.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430866598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.750 kcal (2) G-P(sol) polarization free energy of solvation -31.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.567 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds