Wall clock time and date at job start Tue Mar 31 2020 22:35:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86807 * 120.00047 * 2 1 4 4 H 1.48494 * 109.47052 * 239.99926 * 3 2 1 5 5 H 1.48500 * 109.47055 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47106 * 119.99366 * 3 2 1 7 7 C 1.37875 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99720 * 175.14336 * 7 2 1 9 9 C 1.50694 * 120.00314 * 355.42420 * 7 2 1 10 10 C 1.52992 * 115.55114 * 274.92789 * 9 7 2 11 11 N 1.46495 * 109.47269 * 294.81128 * 10 9 7 12 12 C 1.34782 * 120.00258 * 184.79147 * 11 10 9 13 13 O 1.21582 * 119.99693 * 0.02562 * 12 11 10 14 14 N 1.34776 * 120.00034 * 180.02562 * 12 11 10 15 15 C 1.46497 * 120.00194 * 180.02562 * 14 12 11 16 16 C 1.52996 * 109.47267 * 180.02562 * 15 14 12 17 17 O 1.42900 * 109.47309 * 65.00365 * 16 15 14 18 18 C 1.35691 * 117.00078 * 180.02562 * 17 16 15 19 19 C 1.38909 * 119.67130 * 179.72104 * 18 17 16 20 20 C 1.38379 * 119.12610 * 179.78924 * 19 18 17 21 21 C 1.38927 * 118.47470 * 0.47876 * 20 19 18 22 22 Cl 1.73599 * 120.37005 * 179.76702 * 21 20 19 23 23 C 1.38151 * 119.26077 * 359.74401 * 21 20 19 24 24 N 1.31972 * 120.82008 * 0.02562 * 23 21 20 25 25 C 1.53003 * 117.49968 * 129.25534 * 9 7 2 26 26 C 1.53006 * 117.49603 * 60.59599 * 9 7 2 27 27 H 0.97001 * 119.99960 * 5.00103 * 1 2 3 28 28 H 1.09001 * 109.47339 * 54.81686 * 10 9 7 29 29 H 1.09007 * 109.46904 * 174.81223 * 10 9 7 30 30 H 0.96999 * 120.00105 * 4.80424 * 11 10 9 31 31 H 0.97004 * 120.00199 * 0.02562 * 14 12 11 32 32 H 1.09007 * 109.47147 * 300.00790 * 15 14 12 33 33 H 1.09003 * 109.46836 * 59.99708 * 15 14 12 34 34 H 1.09007 * 109.46564 * 184.99907 * 16 15 14 35 35 H 1.08996 * 109.47273 * 304.99631 * 16 15 14 36 36 H 1.07996 * 120.44030 * 0.02876 * 19 18 17 37 37 H 1.07996 * 120.76506 * 180.22625 * 20 19 18 38 38 H 1.08000 * 119.59141 * 180.02562 * 23 21 20 39 39 H 1.09003 * 117.50034 * 359.97438 * 25 9 7 40 40 H 1.09002 * 117.49971 * 145.02730 * 25 9 7 41 41 H 1.08996 * 117.49810 * 214.97781 * 26 9 7 42 42 H 1.08995 * 117.50078 * 359.97438 * 26 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7465 -0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0044 -1.1940 0.0005 8 1 3.0816 -1.1957 -0.0787 9 6 1.2546 -2.4970 0.1052 10 6 0.9188 -2.9527 1.5266 11 7 2.1578 -3.2464 2.2508 12 6 2.1052 -3.7590 3.4962 13 8 1.0293 -3.9781 4.0184 14 7 3.2451 -4.0287 4.1627 15 6 3.1879 -4.5864 5.5162 16 6 4.6093 -4.7963 6.0419 17 8 5.2572 -3.5303 6.1818 18 6 6.5342 -3.5391 6.6404 19 6 7.2187 -2.3399 6.7921 20 6 8.5191 -2.3618 7.2648 21 6 9.0956 -3.5906 7.5612 22 17 10.7259 -3.6756 8.1514 23 6 8.3567 -4.7440 7.3815 24 7 7.1167 -4.6897 6.9332 25 6 1.5730 -3.5803 -0.9273 26 6 0.2453 -2.8218 -0.9979 27 1 -0.4850 0.8369 -0.0732 28 1 0.3749 -2.1616 2.0428 29 1 0.3013 -3.8500 1.4840 30 1 3.0162 -3.0718 1.8342 31 1 4.1035 -3.8536 3.7463 32 1 2.6567 -3.8961 6.1715 33 1 2.6637 -5.5419 5.4936 34 1 4.5685 -5.2927 7.0115 35 1 5.1686 -5.4151 5.3402 36 1 6.7410 -1.4026 6.5481 37 1 9.0745 -1.4450 7.3963 38 1 8.7995 -5.7021 7.6106 39 1 2.3246 -3.3504 -1.6826 40 1 1.5428 -4.6177 -0.5940 41 1 -0.6578 -3.3605 -0.7110 42 1 0.1233 -2.0928 -1.7990 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000430866598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:35:12 Heat of formation + Delta-G solvation = -36.013867 kcal Electronic energy + Delta-G solvation = -25707.552588 eV Core-core repulsion = 21713.957194 eV Total energy + Delta-G solvation = -3993.595394 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.75502 -40.93144 -39.28550 -38.51754 -37.49250 -35.82260 -34.92933 -33.93489 -33.61689 -31.76417 -30.26032 -27.97292 -26.92729 -25.23392 -24.32949 -23.24063 -22.89709 -21.83888 -21.22885 -19.68237 -19.31984 -18.31082 -17.92690 -17.59209 -17.48007 -16.81933 -16.67031 -16.44587 -15.79736 -15.63835 -15.52306 -15.26528 -14.84588 -14.52038 -14.47199 -14.37341 -14.05763 -13.60056 -13.52346 -13.40241 -13.06555 -12.91537 -12.78645 -12.66005 -12.37807 -12.25181 -12.00430 -11.93854 -11.46133 -11.24787 -10.98421 -10.92405 -10.79860 -10.42875 -10.29807 -10.02094 -9.59356 -9.47448 -8.07319 -6.21488 -0.09020 0.05601 1.03273 1.44130 1.45952 1.52036 1.79781 1.91951 2.25296 2.43732 2.54962 3.15473 3.20508 3.34504 3.64324 3.70606 3.71077 3.87938 3.99040 4.12046 4.26765 4.40630 4.50160 4.57992 4.63732 4.67776 4.71804 4.76040 4.80721 4.88759 5.01204 5.04949 5.20055 5.31020 5.49008 5.58105 5.64581 5.74012 5.80280 6.09063 6.12782 6.38713 6.61820 6.85634 7.21933 7.47944 7.67628 8.99523 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012992 B = 0.002153 C = 0.001952 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.583408 B =12999.726595 C =14342.824741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.908 5.908 2 C 0.023 3.977 3 Si 0.950 3.050 4 H -0.269 1.269 5 H -0.292 1.292 6 H -0.272 1.272 7 C -0.503 4.503 8 H 0.063 0.937 9 C 0.001 3.999 10 C 0.200 3.800 11 N -0.716 5.716 12 C 0.697 3.303 13 O -0.645 6.645 14 N -0.734 5.734 15 C 0.142 3.858 16 C 0.070 3.930 17 O -0.311 6.311 18 C 0.312 3.688 19 C -0.184 4.184 20 C -0.026 4.026 21 C -0.134 4.134 22 Cl -0.050 7.050 23 C 0.151 3.849 24 N -0.539 5.539 25 C -0.176 4.176 26 C -0.153 4.153 27 H 0.259 0.741 28 H 0.022 0.978 29 H 0.036 0.964 30 H 0.406 0.594 31 H 0.409 0.591 32 H 0.061 0.939 33 H 0.096 0.904 34 H 0.099 0.901 35 H 0.085 0.915 36 H 0.161 0.839 37 H 0.174 0.826 38 H 0.188 0.812 39 H 0.085 0.915 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 21.015 -9.113 15.832 27.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.178 4.178 3 Si 0.776 3.224 4 H -0.194 1.194 5 H -0.218 1.218 6 H -0.197 1.197 7 C -0.541 4.541 8 H 0.081 0.919 9 C 0.001 3.999 10 C 0.075 3.925 11 N -0.369 5.369 12 C 0.396 3.604 13 O -0.528 6.528 14 N -0.391 5.391 15 C 0.018 3.982 16 C -0.005 4.005 17 O -0.218 6.218 18 C 0.134 3.866 19 C -0.204 4.204 20 C -0.052 4.052 21 C -0.163 4.163 22 Cl -0.021 7.021 23 C -0.005 4.005 24 N -0.264 5.264 25 C -0.213 4.213 26 C -0.191 4.191 27 H 0.068 0.932 28 H 0.040 0.960 29 H 0.055 0.945 30 H 0.242 0.758 31 H 0.244 0.756 32 H 0.080 0.920 33 H 0.114 0.886 34 H 0.117 0.883 35 H 0.104 0.896 36 H 0.178 0.822 37 H 0.192 0.808 38 H 0.205 0.795 39 H 0.103 0.897 40 H 0.106 0.894 41 H 0.088 0.912 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 19.341 -9.742 16.221 27.058 hybrid contribution 1.122 1.836 -0.340 2.178 sum 20.463 -7.906 15.882 27.083 Atomic orbital electron populations 1.70107 1.07241 1.27335 1.49843 1.25716 0.95501 1.02100 0.94455 0.85742 0.78380 0.79432 0.78826 1.19410 1.21809 1.19719 1.20621 0.92902 0.89528 1.51055 0.91852 1.19084 1.00294 0.93987 0.86567 1.20403 0.84185 0.96044 0.91909 1.44930 1.10650 1.66833 1.14523 1.16164 0.84393 0.78439 0.81360 1.90843 1.29802 1.62346 1.69796 1.44908 1.06987 1.69803 1.17402 1.21339 0.95267 1.00076 0.81536 1.22954 0.90904 0.83353 1.03257 1.86321 1.22410 1.33969 1.79140 1.20154 0.85230 0.90424 0.90835 1.21333 0.95072 0.98245 1.05776 1.21645 0.93237 0.98288 0.92027 1.21924 0.89572 0.96276 1.08537 1.98388 1.18285 1.98646 1.86776 1.22761 0.87380 0.98783 0.91620 1.67506 1.12980 1.27890 1.18000 1.22991 0.98863 0.95907 1.03563 1.22391 0.92138 1.01798 1.02810 0.93238 0.95950 0.94549 0.75831 0.75571 0.92033 0.88620 0.88282 0.89644 0.82176 0.80828 0.79495 0.89689 0.89408 0.91233 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.49 12.65 21.45 0.27 -51.21 16 2 C 0.02 1.22 5.43 84.65 0.46 1.68 16 3 Si 0.95 42.20 29.54 68.60 2.03 44.23 16 4 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 5 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 6 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 7 C -0.50 -25.65 8.59 25.60 0.22 -25.43 16 8 H 0.06 3.10 7.82 -2.91 -0.02 3.07 16 9 C 0.00 0.07 1.47 -52.93 -0.08 -0.01 16 10 C 0.20 9.26 5.50 86.38 0.48 9.73 16 11 N -0.72 -27.80 5.48 -478.55 -2.62 -30.42 16 12 C 0.70 26.35 8.57 179.05 1.53 27.88 16 13 O -0.64 -29.80 16.34 -3.97 -0.06 -29.87 16 14 N -0.73 -19.88 5.51 -478.54 -2.64 -22.52 16 15 C 0.14 3.16 6.06 86.38 0.52 3.68 16 16 C 0.07 1.20 5.44 71.98 0.39 1.59 16 17 O -0.31 -6.34 10.06 -90.10 -0.91 -7.25 16 18 C 0.31 5.81 7.49 84.79 0.63 6.44 16 19 C -0.18 -2.79 10.04 22.46 0.23 -2.56 16 20 C -0.03 -0.32 9.97 22.47 0.22 -0.09 16 21 C -0.13 -1.69 6.34 22.41 0.14 -1.55 16 22 Cl -0.05 -0.56 28.99 -2.72 -0.08 -0.64 16 23 C 0.15 2.04 10.98 84.65 0.93 2.97 16 24 N -0.54 -9.38 9.21 -308.86 -2.85 -12.22 16 25 C -0.18 -7.03 9.96 30.62 0.30 -6.73 16 26 C -0.15 -7.04 9.14 30.62 0.28 -6.76 16 27 H 0.26 14.20 8.32 -92.71 -0.77 13.42 16 28 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.04 1.67 8.09 -2.38 -0.02 1.65 16 30 H 0.41 14.05 8.34 -92.71 -0.77 13.28 16 31 H 0.41 9.16 8.49 -92.71 -0.79 8.37 16 32 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 33 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.10 1.43 8.11 -2.38 -0.02 1.41 16 35 H 0.09 1.32 8.10 -2.39 -0.02 1.30 16 36 H 0.16 2.11 8.06 -2.91 -0.02 2.09 16 37 H 0.17 1.20 8.06 -2.91 -0.02 1.18 16 38 H 0.19 1.59 8.06 -2.91 -0.02 1.57 16 39 H 0.08 3.27 8.14 -2.39 -0.02 3.25 16 40 H 0.09 3.12 8.14 -2.39 -0.02 3.10 16 41 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 42 H 0.06 3.26 8.14 -2.39 -0.02 3.24 16 Total: -1.00 -67.50 382.52 -1.09 -68.59 By element: Atomic # 1 Polarization: 30.96 SS G_CDS: -0.50 Total: 30.47 kcal Atomic # 6 Polarization: 4.58 SS G_CDS: 6.27 Total: 10.85 kcal Atomic # 7 Polarization: -108.54 SS G_CDS: -7.83 Total: -116.38 kcal Atomic # 8 Polarization: -36.15 SS G_CDS: -0.97 Total: -37.12 kcal Atomic # 14 Polarization: 42.20 SS G_CDS: 2.03 Total: 44.23 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -0.08 Total: -0.64 kcal Total: -67.50 -1.09 -68.59 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000430866598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.578 kcal (2) G-P(sol) polarization free energy of solvation -67.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds