Wall clock time and date at job start Tue Mar 31 2020 22:20:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00083 * 2 1 4 4 H 1.48502 * 109.47053 * 269.99714 * 3 2 1 5 5 H 1.48490 * 109.47132 * 29.99930 * 3 2 1 6 6 H 1.48507 * 109.46947 * 150.00078 * 3 2 1 7 7 C 1.37876 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99858 * 183.41357 * 7 2 1 9 9 C 1.50700 * 120.00349 * 3.41171 * 7 2 1 10 10 C 1.53000 * 115.54873 * 89.69347 * 9 7 2 11 11 S 1.81398 * 109.47039 * 37.72150 * 10 9 7 12 12 O 1.42108 * 110.54164 * 61.07811 * 11 10 9 13 13 O 1.42091 * 110.54406 * 284.32607 * 11 10 9 14 14 N 1.65606 * 104.44812 * 172.69765 * 11 10 9 15 15 C 1.46497 * 119.99565 * 68.36227 * 14 11 10 16 16 C 1.50704 * 115.54971 * 203.20586 * 15 14 11 17 17 C 1.38267 * 119.98494 * 356.92616 * 16 15 14 18 18 C 1.38224 * 120.05251 * 179.72633 * 17 16 15 19 19 C 1.38222 * 120.02522 * 0.30238 * 18 17 16 20 20 C 1.38437 * 119.97140 * 359.97383 * 19 18 17 21 21 F 1.35105 * 120.02533 * 180.02562 * 20 19 18 22 22 C 1.38171 * 119.99128 * 177.21057 * 16 15 14 23 23 C 1.53005 * 117.52145 * 348.89849 * 15 14 11 24 24 C 1.52997 * 117.50343 * 57.53109 * 15 14 11 25 25 C 1.52992 * 117.52020 * 235.40022 * 9 7 2 26 26 C 1.52994 * 60.00439 * 107.47795 * 25 9 7 27 27 H 0.97004 * 119.99622 * 5.01549 * 1 2 3 28 28 H 1.09007 * 109.46868 * 277.72412 * 10 9 7 29 29 H 1.08999 * 109.47244 * 157.72466 * 10 9 7 30 30 H 0.96997 * 120.00192 * 248.35826 * 14 11 10 31 31 H 1.08008 * 119.97448 * 0.02562 * 17 16 15 32 32 H 1.08002 * 119.98595 * 180.27917 * 18 17 16 33 33 H 1.07993 * 120.00996 * 179.97438 * 19 18 17 34 34 H 1.08004 * 120.01124 * 359.97438 * 22 16 15 35 35 H 1.08995 * 117.50156 * 214.97467 * 23 15 14 36 36 H 1.09004 * 117.49334 * 359.97438 * 23 15 14 37 37 H 1.08999 * 117.50052 * 359.97438 * 24 15 14 38 38 H 1.09002 * 117.50017 * 144.97208 * 24 15 14 39 39 H 1.09003 * 117.49882 * 214.96466 * 25 9 7 40 40 H 1.09000 * 117.50000 * 359.97438 * 25 9 7 41 41 H 1.09005 * 117.50263 * 252.51147 * 26 25 9 42 42 H 1.09000 * 117.52396 * 107.47791 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0831 -1.1949 0.0562 9 6 1.2530 -2.4981 -0.0765 10 6 0.9888 -3.0249 -1.4885 11 16 2.4260 -2.6817 -2.5407 12 8 3.5816 -3.3364 -2.0354 13 8 2.4618 -1.3084 -2.9036 14 7 2.0973 -3.4706 -3.9592 15 6 1.0114 -3.0016 -4.8235 16 6 0.4344 -4.0322 -5.7596 17 6 0.9764 -5.3033 -5.8067 18 6 0.4447 -6.2513 -6.6606 19 6 -0.6256 -5.9276 -7.4731 20 6 -1.1654 -4.6535 -7.4309 21 9 -2.2120 -4.3361 -8.2241 22 6 -0.6322 -3.7047 -6.5746 23 6 0.0552 -1.9530 -4.2514 24 6 1.0769 -1.5555 -5.3187 25 6 1.5096 -3.5280 1.0253 26 6 0.1857 -2.7623 0.9874 27 1 -0.4850 0.8369 -0.0734 28 1 0.1095 -2.5308 -1.9019 29 1 0.8161 -4.1004 -1.4486 30 1 2.6238 -4.2431 -4.2178 31 1 1.8128 -5.5572 -5.1722 32 1 0.8661 -7.2452 -6.6933 33 1 -1.0406 -6.6683 -8.1405 34 1 -1.0527 -2.7105 -6.5406 35 1 -0.9910 -2.0086 -4.5521 36 1 0.2338 -1.6123 -3.2315 37 1 1.9278 -0.9528 -5.0011 38 1 0.7032 -1.3495 -6.3217 39 1 1.4902 -4.5810 0.7443 40 1 2.2225 -3.2628 1.8060 41 1 0.0273 -1.9930 1.7433 42 1 -0.7050 -3.3110 0.6813 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451232213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:49 Heat of formation + Delta-G solvation = -30.041543 kcal Electronic energy + Delta-G solvation = -28011.327725 eV Core-core repulsion = 24000.115055 eV Total energy + Delta-G solvation = -4011.212670 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -49.08268 -40.03136 -37.55972 -36.76091 -36.07275 -35.02427 -32.30254 -32.05024 -30.92303 -30.38903 -28.38288 -25.54060 -24.12699 -22.75985 -22.34388 -21.16612 -20.70039 -19.55657 -18.68533 -18.29499 -16.92811 -16.58405 -16.32806 -16.25392 -15.78290 -15.64826 -15.09859 -14.77672 -14.48527 -14.34765 -14.26956 -13.77839 -13.35696 -13.22533 -13.07766 -12.96314 -12.37176 -12.00902 -11.86916 -11.74508 -11.58450 -11.36684 -11.25769 -11.13805 -10.94992 -10.91863 -10.75727 -10.52370 -10.43394 -10.36385 -10.08770 -9.72832 -9.44936 -9.08512 -9.01287 -8.56107 -8.47785 -8.12072 -6.18586 -4.35536 0.89062 0.95397 1.03411 3.21925 3.31389 3.35010 3.39984 3.44457 3.96454 4.03134 4.28125 4.38619 4.44067 4.61580 4.62741 4.78266 4.91178 4.95284 5.04715 5.11866 5.12648 5.21549 5.35660 5.56468 5.66973 5.77194 5.78458 5.84279 5.89276 5.94864 6.09377 6.12622 6.33105 6.34230 6.36960 6.45278 6.61162 6.63680 6.71077 6.94863 7.16152 7.19535 7.48397 7.74200 8.15357 8.74569 9.42693 10.87773 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016385 B = 0.003784 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.486784 B = 7398.660583 C = 7774.035818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.866 5.866 2 C 0.098 3.902 3 Si 0.888 3.112 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.270 1.270 7 C -0.542 4.542 8 H 0.068 0.932 9 C 0.043 3.957 10 C -0.568 4.568 11 S 2.623 3.377 12 O -0.970 6.970 13 O -0.939 6.939 14 N -1.102 6.102 15 C 0.142 3.858 16 C -0.005 4.005 17 C -0.125 4.125 18 C -0.084 4.084 19 C -0.162 4.162 20 C 0.104 3.896 21 F -0.140 7.140 22 C -0.151 4.151 23 C -0.194 4.194 24 C -0.171 4.171 25 C -0.207 4.207 26 C -0.132 4.132 27 H 0.265 0.735 28 H 0.130 0.870 29 H 0.100 0.900 30 H 0.411 0.589 31 H 0.131 0.869 32 H 0.135 0.865 33 H 0.134 0.866 34 H 0.141 0.859 35 H 0.112 0.888 36 H 0.125 0.875 37 H 0.129 0.871 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.084 0.916 41 H 0.091 0.909 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.741 -10.390 -13.518 17.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.500 5.500 2 C -0.109 4.109 3 Si 0.714 3.286 4 H -0.192 1.192 5 H -0.211 1.211 6 H -0.195 1.195 7 C -0.579 4.579 8 H 0.087 0.913 9 C 0.041 3.959 10 C -0.700 4.700 11 S 2.720 3.280 12 O -0.960 6.960 13 O -0.928 6.928 14 N -0.855 5.855 15 C 0.051 3.949 16 C -0.007 4.007 17 C -0.144 4.144 18 C -0.103 4.103 19 C -0.180 4.180 20 C 0.085 3.915 21 F -0.118 7.118 22 C -0.170 4.170 23 C -0.232 4.232 24 C -0.211 4.211 25 C -0.244 4.244 26 C -0.171 4.171 27 H 0.074 0.926 28 H 0.148 0.852 29 H 0.119 0.881 30 H 0.245 0.755 31 H 0.149 0.851 32 H 0.153 0.847 33 H 0.152 0.848 34 H 0.158 0.842 35 H 0.130 0.870 36 H 0.143 0.857 37 H 0.147 0.853 38 H 0.118 0.882 39 H 0.086 0.914 40 H 0.103 0.897 41 H 0.110 0.890 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.232 -9.610 -13.281 16.544 hybrid contribution -0.369 0.187 -0.173 0.449 sum -2.601 -9.423 -13.454 16.630 Atomic orbital electron populations 1.70003 1.06073 1.27485 1.46487 1.24887 0.94729 0.99238 0.92089 0.86626 0.80099 0.82742 0.79126 1.19249 1.21137 1.19485 1.20616 0.93082 0.88610 1.55624 0.91346 1.18202 1.00756 0.93936 0.83029 1.30278 1.19182 1.07411 1.13127 1.04797 0.76515 0.74163 0.72540 1.93496 1.46364 1.76821 1.79367 1.93515 1.86546 1.31970 1.80803 1.55745 1.43957 1.47169 1.38604 1.18663 0.91905 0.88285 0.96062 1.18813 0.93977 0.93510 0.94430 1.21021 1.00955 0.92644 0.99755 1.20986 0.95015 0.99636 0.94617 1.21138 0.98953 0.95425 1.02527 1.17583 0.87160 0.94214 0.92576 1.91507 1.54950 1.93407 1.71971 1.20910 0.98191 1.00386 0.97528 1.24094 0.97044 0.99875 1.02212 1.23910 1.03126 0.95262 0.98752 1.23158 1.01478 0.95343 1.04447 1.22477 0.90273 1.00887 1.03450 0.92561 0.85201 0.88131 0.75524 0.85119 0.84748 0.84785 0.84166 0.87021 0.85725 0.85274 0.88225 0.91448 0.89727 0.89015 0.91816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -23.25 12.31 55.43 0.68 -22.57 16 2 C 0.10 2.62 5.42 -17.82 -0.10 2.53 16 3 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 4 H -0.27 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 7 C -0.54 -14.56 6.90 -34.44 -0.24 -14.80 16 8 H 0.07 1.90 7.82 -52.49 -0.41 1.49 16 9 C 0.04 1.02 1.83 -155.66 -0.29 0.74 16 10 C -0.57 -11.51 5.79 37.16 0.21 -11.30 16 11 S 2.62 53.08 4.03 -107.50 -0.43 52.64 16 12 O -0.97 -22.00 18.08 -57.54 -1.04 -23.04 16 13 O -0.94 -21.51 13.42 -57.54 -0.77 -22.28 16 14 N -1.10 -16.61 5.72 -0.40 0.00 -16.62 16 15 C 0.14 1.98 3.26 -132.97 -0.43 1.54 16 16 C -0.01 -0.06 5.67 -104.63 -0.59 -0.66 16 17 C -0.13 -1.28 9.44 -39.58 -0.37 -1.66 16 18 C -0.08 -0.72 10.04 -39.59 -0.40 -1.12 16 19 C -0.16 -1.47 10.03 -39.51 -0.40 -1.86 16 20 C 0.10 1.12 7.30 -39.42 -0.29 0.83 16 21 F -0.14 -1.58 17.27 2.25 0.04 -1.54 16 22 C -0.15 -1.68 8.71 -39.52 -0.34 -2.02 16 23 C -0.19 -2.92 8.22 -26.73 -0.22 -3.14 16 24 C -0.17 -2.45 9.17 -26.73 -0.25 -2.70 16 25 C -0.21 -4.48 9.88 -26.74 -0.26 -4.74 16 26 C -0.13 -2.99 8.98 -26.73 -0.24 -3.23 16 27 H 0.26 6.79 8.32 -40.82 -0.34 6.45 16 28 H 0.13 2.58 5.50 -51.92 -0.29 2.30 16 29 H 0.10 1.72 7.93 -51.92 -0.41 1.31 16 30 H 0.41 5.11 6.90 -34.48 -0.24 4.88 16 31 H 0.13 1.16 6.24 -52.48 -0.33 0.84 16 32 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 33 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 34 H 0.14 1.41 6.50 -52.48 -0.34 1.07 16 35 H 0.11 1.39 7.15 -51.93 -0.37 1.01 16 36 H 0.12 2.27 3.94 -51.93 -0.20 2.06 16 37 H 0.13 2.14 6.48 -51.93 -0.34 1.81 16 38 H 0.10 1.14 7.48 -51.93 -0.39 0.75 16 39 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 40 H 0.08 1.83 8.14 -51.93 -0.42 1.40 16 41 H 0.09 2.23 7.95 -51.93 -0.41 1.82 16 42 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 LS Contribution 354.99 15.07 5.35 5.35 Total: -1.00 -31.49 354.99 -10.37 -41.87 By element: Atomic # 1 Polarization: 16.27 SS G_CDS: -4.97 Total: 11.30 kcal Atomic # 6 Polarization: -37.39 SS G_CDS: -4.20 Total: -41.59 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.68 Total: -39.18 kcal Atomic # 8 Polarization: -43.51 SS G_CDS: -1.81 Total: -45.32 kcal Atomic # 9 Polarization: -1.58 SS G_CDS: 0.04 Total: -1.54 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 53.08 SS G_CDS: -0.43 Total: 52.64 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -31.49 -10.37 -41.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451232213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.825 kcal (2) G-P(sol) polarization free energy of solvation -31.494 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.042 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds