Wall clock time and date at job start Tue Mar 31 2020 22:20:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 120.00083 * 2 1 4 4 H 1.48502 * 109.47053 * 269.99714 * 3 2 1 5 5 H 1.48490 * 109.47132 * 29.99930 * 3 2 1 6 6 H 1.48507 * 109.46947 * 150.00078 * 3 2 1 7 7 C 1.37876 * 119.99844 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99858 * 183.41357 * 7 2 1 9 9 C 1.50700 * 120.00349 * 3.41171 * 7 2 1 10 10 C 1.53000 * 115.54873 * 89.69347 * 9 7 2 11 11 S 1.81398 * 109.47039 * 37.72150 * 10 9 7 12 12 O 1.42108 * 110.54164 * 61.07811 * 11 10 9 13 13 O 1.42091 * 110.54406 * 284.32607 * 11 10 9 14 14 N 1.65606 * 104.44812 * 172.69765 * 11 10 9 15 15 C 1.46497 * 119.99565 * 68.36227 * 14 11 10 16 16 C 1.50704 * 115.54971 * 203.20586 * 15 14 11 17 17 C 1.38267 * 119.98494 * 356.92616 * 16 15 14 18 18 C 1.38224 * 120.05251 * 179.72633 * 17 16 15 19 19 C 1.38222 * 120.02522 * 0.30238 * 18 17 16 20 20 C 1.38437 * 119.97140 * 359.97383 * 19 18 17 21 21 F 1.35105 * 120.02533 * 180.02562 * 20 19 18 22 22 C 1.38171 * 119.99128 * 177.21057 * 16 15 14 23 23 C 1.53005 * 117.52145 * 348.89849 * 15 14 11 24 24 C 1.52997 * 117.50343 * 57.53109 * 15 14 11 25 25 C 1.52992 * 117.52020 * 235.40022 * 9 7 2 26 26 C 1.52994 * 60.00439 * 107.47795 * 25 9 7 27 27 H 0.97004 * 119.99622 * 5.01549 * 1 2 3 28 28 H 1.09007 * 109.46868 * 277.72412 * 10 9 7 29 29 H 1.08999 * 109.47244 * 157.72466 * 10 9 7 30 30 H 0.96997 * 120.00192 * 248.35826 * 14 11 10 31 31 H 1.08008 * 119.97448 * 0.02562 * 17 16 15 32 32 H 1.08002 * 119.98595 * 180.27917 * 18 17 16 33 33 H 1.07993 * 120.00996 * 179.97438 * 19 18 17 34 34 H 1.08004 * 120.01124 * 359.97438 * 22 16 15 35 35 H 1.08995 * 117.50156 * 214.97467 * 23 15 14 36 36 H 1.09004 * 117.49334 * 359.97438 * 23 15 14 37 37 H 1.08999 * 117.50052 * 359.97438 * 24 15 14 38 38 H 1.09002 * 117.50017 * 144.97208 * 24 15 14 39 39 H 1.09003 * 117.49882 * 214.96466 * 25 9 7 40 40 H 1.09000 * 117.50000 * 359.97438 * 25 9 7 41 41 H 1.09005 * 117.50263 * 252.51147 * 26 25 9 42 42 H 1.09000 * 117.52396 * 107.47791 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0831 -1.1949 0.0562 9 6 1.2530 -2.4981 -0.0765 10 6 0.9888 -3.0249 -1.4885 11 16 2.4260 -2.6817 -2.5407 12 8 3.5816 -3.3364 -2.0354 13 8 2.4618 -1.3084 -2.9036 14 7 2.0973 -3.4706 -3.9592 15 6 1.0114 -3.0016 -4.8235 16 6 0.4344 -4.0322 -5.7596 17 6 0.9764 -5.3033 -5.8067 18 6 0.4447 -6.2513 -6.6606 19 6 -0.6256 -5.9276 -7.4731 20 6 -1.1654 -4.6535 -7.4309 21 9 -2.2120 -4.3361 -8.2241 22 6 -0.6322 -3.7047 -6.5746 23 6 0.0552 -1.9530 -4.2514 24 6 1.0769 -1.5555 -5.3187 25 6 1.5096 -3.5280 1.0253 26 6 0.1857 -2.7623 0.9874 27 1 -0.4850 0.8369 -0.0734 28 1 0.1095 -2.5308 -1.9019 29 1 0.8161 -4.1004 -1.4486 30 1 2.6238 -4.2431 -4.2178 31 1 1.8128 -5.5572 -5.1722 32 1 0.8661 -7.2452 -6.6933 33 1 -1.0406 -6.6683 -8.1405 34 1 -1.0527 -2.7105 -6.5406 35 1 -0.9910 -2.0086 -4.5521 36 1 0.2338 -1.6123 -3.2315 37 1 1.9278 -0.9528 -5.0011 38 1 0.7032 -1.3495 -6.3217 39 1 1.4902 -4.5810 0.7443 40 1 2.2225 -3.2628 1.8060 41 1 0.0273 -1.9930 1.7433 42 1 -0.7050 -3.3110 0.6813 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451232213.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:20:48 Heat of formation + Delta-G solvation = -49.141229 kcal Electronic energy + Delta-G solvation = -28012.155950 eV Core-core repulsion = 24000.115055 eV Total energy + Delta-G solvation = -4012.040894 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.109 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -49.88654 -40.96454 -38.64799 -38.54095 -37.65044 -36.71620 -34.08813 -33.47805 -31.74004 -31.21261 -30.02468 -27.54058 -25.03057 -23.56567 -23.48356 -22.91653 -21.80393 -21.27355 -20.17763 -19.40089 -18.49168 -18.05336 -17.33934 -17.06760 -16.89001 -16.86394 -16.59514 -16.56359 -15.90517 -15.54967 -15.48176 -15.11391 -14.85620 -14.40915 -14.16099 -13.90272 -13.87712 -13.73610 -13.15474 -13.06095 -12.98559 -12.85156 -12.78340 -12.66225 -12.47785 -12.40934 -12.30735 -12.23209 -12.05152 -11.81239 -11.52774 -11.47709 -11.00797 -10.56325 -10.39777 -9.92356 -9.81923 -9.48588 -8.23109 -6.42373 -0.54904 0.11050 0.21411 1.35481 1.42812 1.46259 1.92454 2.39193 2.40001 2.91955 2.99582 3.06944 3.15884 3.30697 3.36081 3.44275 3.57570 3.80859 3.91945 4.01778 4.07617 4.17040 4.25840 4.39235 4.45085 4.54525 4.60789 4.69572 4.73521 4.83665 4.89692 4.99003 5.01509 5.07284 5.14651 5.21927 5.24471 5.35191 5.41863 5.50625 5.65707 5.68326 5.89466 6.06937 6.19951 6.67922 7.36120 8.82812 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.016385 B = 0.003784 C = 0.003601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1708.486784 B = 7398.660583 C = 7774.035818 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.880 5.880 2 C 0.065 3.935 3 Si 0.920 3.080 4 H -0.275 1.275 5 H -0.271 1.271 6 H -0.270 1.270 7 C -0.556 4.556 8 H 0.046 0.954 9 C 0.010 3.990 10 C -0.564 4.564 11 S 2.634 3.366 12 O -0.999 6.999 13 O -0.974 6.974 14 N -1.087 6.087 15 C 0.153 3.847 16 C -0.020 4.020 17 C -0.131 4.131 18 C -0.077 4.077 19 C -0.154 4.154 20 C 0.088 3.912 21 F -0.147 7.147 22 C -0.156 4.156 23 C -0.208 4.208 24 C -0.177 4.177 25 C -0.195 4.195 26 C -0.130 4.130 27 H 0.267 0.733 28 H 0.132 0.868 29 H 0.135 0.865 30 H 0.425 0.575 31 H 0.142 0.858 32 H 0.168 0.832 33 H 0.158 0.842 34 H 0.144 0.856 35 H 0.135 0.865 36 H 0.092 0.908 37 H 0.101 0.899 38 H 0.128 0.872 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.066 0.934 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.468 -12.818 -14.987 20.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.515 5.515 2 C -0.141 4.141 3 Si 0.745 3.255 4 H -0.201 1.201 5 H -0.196 1.196 6 H -0.195 1.195 7 C -0.593 4.593 8 H 0.064 0.936 9 C 0.008 3.992 10 C -0.696 4.696 11 S 2.731 3.269 12 O -0.990 6.990 13 O -0.963 6.963 14 N -0.844 5.844 15 C 0.062 3.938 16 C -0.022 4.022 17 C -0.149 4.149 18 C -0.095 4.095 19 C -0.173 4.173 20 C 0.069 3.931 21 F -0.125 7.125 22 C -0.175 4.175 23 C -0.246 4.246 24 C -0.216 4.216 25 C -0.232 4.232 26 C -0.169 4.169 27 H 0.076 0.924 28 H 0.150 0.850 29 H 0.153 0.847 30 H 0.262 0.738 31 H 0.160 0.840 32 H 0.185 0.815 33 H 0.175 0.825 34 H 0.162 0.838 35 H 0.153 0.847 36 H 0.110 0.890 37 H 0.120 0.880 38 H 0.146 0.854 39 H 0.118 0.882 40 H 0.096 0.904 41 H 0.085 0.915 42 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.942 -12.038 -14.736 19.254 hybrid contribution -0.139 0.878 0.233 0.919 sum -3.081 -11.160 -14.503 18.558 Atomic orbital electron populations 1.70026 1.06414 1.27933 1.47103 1.25335 0.95413 1.01043 0.92266 0.86131 0.79626 0.81077 0.78659 1.20084 1.19577 1.19506 1.20733 0.92346 0.90610 1.55639 0.93554 1.18340 1.01713 0.93841 0.85272 1.30174 1.19035 1.09515 1.10894 1.04153 0.76104 0.73492 0.73126 1.93448 1.47966 1.77131 1.80443 1.93477 1.87003 1.34365 1.81498 1.55182 1.44666 1.47336 1.37203 1.18746 0.90801 0.88692 0.95553 1.18647 0.94997 0.93647 0.94920 1.21277 1.01202 0.92282 1.00175 1.21335 0.94288 1.00616 0.93259 1.21485 0.98458 0.95067 1.02255 1.17769 0.87455 0.94999 0.92896 1.91491 1.55318 1.93557 1.72169 1.20955 0.98092 1.00883 0.97563 1.24077 0.98670 1.01134 1.00676 1.23916 1.02150 0.95648 0.99918 1.23240 1.00328 0.96611 1.02994 1.22385 0.91369 1.00738 1.02382 0.92386 0.84999 0.84665 0.73760 0.84004 0.81488 0.82467 0.83819 0.84674 0.88977 0.88022 0.85403 0.88164 0.90407 0.91488 0.89739 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -47.86 12.31 21.45 0.26 -47.59 16 2 C 0.06 3.54 5.42 84.65 0.46 4.00 16 3 Si 0.92 44.64 29.54 68.60 2.03 46.67 16 4 H -0.28 -13.62 7.11 99.48 0.71 -12.91 16 5 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 6 H -0.27 -12.99 7.11 99.48 0.71 -12.29 16 7 C -0.56 -30.50 6.90 25.60 0.18 -30.32 16 8 H 0.05 2.67 7.82 -2.91 -0.02 2.65 16 9 C 0.01 0.49 1.83 -52.93 -0.10 0.39 16 10 C -0.56 -22.35 5.79 71.98 0.42 -21.94 16 11 S 2.63 106.83 4.03 -56.49 -0.23 106.60 16 12 O -1.00 -45.37 18.08 -127.65 -2.31 -47.68 16 13 O -0.97 -46.07 13.42 -127.65 -1.71 -47.79 16 14 N -1.09 -31.59 5.72 -155.18 -0.89 -32.48 16 15 C 0.15 4.07 3.26 2.86 0.01 4.08 16 16 C -0.02 -0.43 5.67 -19.87 -0.11 -0.54 16 17 C -0.13 -2.26 9.44 22.27 0.21 -2.05 16 18 C -0.08 -1.01 10.04 22.26 0.22 -0.78 16 19 C -0.15 -2.23 10.03 22.31 0.22 -2.01 16 20 C 0.09 1.67 7.30 22.38 0.16 1.83 16 21 F -0.15 -3.05 17.27 44.97 0.78 -2.27 16 22 C -0.16 -3.14 8.71 22.31 0.19 -2.94 16 23 C -0.21 -6.17 8.22 30.60 0.25 -5.92 16 24 C -0.18 -5.04 9.17 30.59 0.28 -4.76 16 25 C -0.19 -8.15 9.88 30.59 0.30 -7.85 16 26 C -0.13 -5.79 8.98 30.59 0.27 -5.51 16 27 H 0.27 13.85 8.32 -92.71 -0.77 13.07 16 28 H 0.13 5.21 5.50 -2.39 -0.01 5.20 16 29 H 0.14 4.28 7.93 -2.39 -0.02 4.26 16 30 H 0.42 9.82 6.90 -96.74 -0.67 9.15 16 31 H 0.14 2.04 6.24 -2.91 -0.02 2.02 16 32 H 0.17 1.08 8.06 -2.91 -0.02 1.06 16 33 H 0.16 1.52 8.06 -2.91 -0.02 1.49 16 34 H 0.14 2.67 6.50 -2.91 -0.02 2.65 16 35 H 0.14 3.24 7.15 -2.39 -0.02 3.22 16 36 H 0.09 3.43 3.94 -2.39 -0.01 3.42 16 37 H 0.10 3.50 6.48 -2.39 -0.02 3.48 16 38 H 0.13 2.80 7.48 -2.39 -0.02 2.78 16 39 H 0.10 3.51 8.07 -2.39 -0.02 3.49 16 40 H 0.08 3.32 8.14 -2.39 -0.02 3.30 16 41 H 0.07 3.29 7.95 -2.38 -0.02 3.27 16 42 H 0.08 3.35 8.14 -2.39 -0.02 3.34 16 Total: -1.00 -69.21 354.99 1.31 -67.90 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: 0.41 Total: 30.96 kcal Atomic # 6 Polarization: -77.29 SS G_CDS: 2.98 Total: -74.32 kcal Atomic # 7 Polarization: -79.45 SS G_CDS: -0.62 Total: -80.08 kcal Atomic # 8 Polarization: -91.45 SS G_CDS: -4.02 Total: -95.47 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.78 Total: -2.27 kcal Atomic # 14 Polarization: 44.64 SS G_CDS: 2.03 Total: 46.67 kcal Atomic # 16 Polarization: 106.83 SS G_CDS: -0.23 Total: 106.60 kcal Total: -69.21 1.31 -67.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451232213.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.758 kcal (2) G-P(sol) polarization free energy of solvation -69.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.141 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds