Wall clock time and date at job start Tue Mar 31 2020 22:32:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00167 * 2 1 4 4 H 1.48503 * 109.47088 * 269.99142 * 3 2 1 5 5 H 1.48496 * 109.47509 * 29.99815 * 3 2 1 6 6 H 1.48503 * 109.47054 * 149.99860 * 3 2 1 7 7 C 1.37882 * 119.99372 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99383 * 186.27801 * 7 2 1 9 9 C 1.50697 * 120.00294 * 6.27223 * 7 2 1 10 10 C 1.53002 * 115.55333 * 275.22545 * 9 7 2 11 11 S 1.81397 * 109.47029 * 294.30074 * 10 9 7 12 12 O 1.42100 * 110.54295 * 293.44344 * 11 10 9 13 13 O 1.42100 * 110.54393 * 70.19377 * 11 10 9 14 14 N 1.65597 * 104.44909 * 181.81779 * 11 10 9 15 15 C 1.46501 * 119.99935 * 64.99648 * 14 11 10 16 16 H 1.08997 * 110.01728 * 23.61400 * 15 14 11 17 17 C 1.53869 * 110.03560 * 262.16736 * 15 14 11 18 18 C 1.54267 * 106.60110 * 240.71485 * 17 15 14 19 19 C 1.54888 * 104.19457 * 336.39008 * 18 17 15 20 20 C 1.54266 * 110.03058 * 144.99698 * 15 14 11 21 21 H 1.09004 * 110.48831 * 24.09210 * 20 15 14 22 22 O 1.42897 * 110.49321 * 261.57701 * 20 15 14 23 23 C 1.42901 * 114.00297 * 150.00172 * 22 20 15 24 24 F 1.39901 * 109.46941 * 300.00147 * 23 22 20 25 25 F 1.39901 * 109.47136 * 60.00111 * 23 22 20 26 26 C 1.53000 * 117.49657 * 129.55505 * 9 7 2 27 27 C 1.52997 * 117.49648 * 60.89885 * 9 7 2 28 28 H 0.96998 * 119.99779 * 354.99376 * 1 2 3 29 29 H 1.09004 * 109.46683 * 54.29981 * 10 9 7 30 30 H 1.08996 * 109.46977 * 174.30114 * 10 9 7 31 31 H 0.97000 * 120.00289 * 245.00098 * 14 11 10 32 32 H 1.09003 * 110.03027 * 0.02562 * 17 15 14 33 33 H 1.09000 * 110.03048 * 121.43085 * 17 15 14 34 34 H 1.09000 * 110.48937 * 217.71321 * 18 17 15 35 35 H 1.08997 * 110.59974 * 95.12163 * 18 17 15 36 36 H 1.08996 * 110.75577 * 279.62812 * 19 18 17 37 37 H 1.08998 * 110.75521 * 156.25261 * 19 18 17 38 38 H 1.08995 * 109.46732 * 180.02562 * 23 22 20 39 39 H 1.08997 * 117.49996 * 0.02562 * 26 9 7 40 40 H 1.09006 * 117.49892 * 145.02230 * 26 9 7 41 41 H 1.09002 * 117.49941 * 214.97793 * 27 9 7 42 42 H 1.09003 * 117.49905 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 3.0796 -1.1969 0.1028 9 6 1.2576 -2.4954 -0.1415 10 6 0.6920 -3.0766 1.1559 11 16 2.0574 -3.5467 2.2537 12 8 2.7943 -4.6273 1.6982 13 8 2.7160 -2.3910 2.7534 14 7 1.3139 -4.1993 3.5817 15 6 0.5425 -5.4383 3.4544 16 1 0.8848 -6.0035 2.5875 17 6 -0.9554 -5.1149 3.3161 18 6 -1.6624 -5.7798 4.5153 19 6 -0.7049 -6.9228 4.9346 20 6 0.6937 -6.2885 4.7327 21 1 0.9546 -5.6573 5.5822 22 8 1.6810 -7.3043 4.5441 23 6 2.3700 -7.6744 5.7401 24 9 3.0242 -6.5554 6.2666 25 9 1.4511 -8.1607 6.6762 26 6 1.7528 -3.4821 -1.2008 27 6 0.4499 -2.7100 -1.4230 28 1 -0.4850 0.8368 0.0733 29 1 0.0707 -2.3286 1.6485 30 1 0.0899 -3.9561 0.9278 31 1 1.3890 -3.7612 4.4438 32 1 -1.1085 -4.0360 3.3433 33 1 -1.3409 -5.5234 2.3820 34 1 -2.6287 -6.1833 4.2126 35 1 -1.7860 -5.0673 5.3308 36 1 -0.8326 -7.7905 4.2874 37 1 -0.8596 -7.1926 5.9792 38 1 3.1021 -8.4492 5.5126 39 1 2.6189 -3.1902 -1.7946 40 1 1.6752 -4.5453 -0.9736 41 1 -0.4844 -3.2656 -1.3419 42 1 0.4583 -1.9099 -2.1632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000451503176.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:19 Heat of formation + Delta-G solvation = -214.756379 kcal Electronic energy + Delta-G solvation = -29111.399282 eV Core-core repulsion = 24661.407551 eV Total energy + Delta-G solvation = -4449.991731 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -49.26876 -47.37145 -39.42673 -36.76884 -36.56922 -36.17958 -35.08515 -33.31511 -32.03453 -28.65950 -28.05270 -27.26372 -25.45638 -25.19287 -21.33670 -21.22566 -20.71160 -19.73304 -19.03798 -18.40866 -18.09623 -17.82846 -16.84002 -16.51753 -16.24053 -15.57684 -15.02156 -14.83609 -14.57126 -14.49133 -14.11902 -13.93985 -13.84027 -13.74942 -13.50811 -13.22131 -13.13413 -12.79810 -12.30084 -12.15744 -11.94949 -11.82506 -11.47718 -11.31420 -11.26057 -11.20094 -11.03289 -10.93491 -10.91303 -10.77960 -10.58612 -10.53085 -10.45818 -10.10900 -9.72118 -9.25542 -8.97601 -8.56707 -8.09616 -6.13400 -4.23496 1.06456 2.75407 3.29671 3.35891 3.37382 3.44727 3.47254 4.13155 4.28823 4.38081 4.38303 4.53943 4.63725 4.71413 4.91072 4.97475 5.13108 5.16213 5.18895 5.22644 5.28114 5.35792 5.48648 5.66471 5.70521 5.79857 5.84415 5.96395 6.02139 6.19683 6.25487 6.36974 6.47663 6.60502 6.71451 6.98255 7.20698 7.25221 7.39267 7.81552 8.20622 8.82248 9.47421 10.94356 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018651 B = 0.003543 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.860413 B = 7901.799831 C = 8256.666048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.081 3.919 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.285 1.285 6 H -0.267 1.267 7 C -0.512 4.512 8 H 0.069 0.931 9 C 0.042 3.958 10 C -0.551 4.551 11 S 2.602 3.398 12 O -0.972 6.972 13 O -0.948 6.948 14 N -1.126 6.126 15 C 0.150 3.850 16 H 0.109 0.891 17 C -0.148 4.148 18 C -0.120 4.120 19 C -0.141 4.141 20 C 0.070 3.930 21 H 0.087 0.913 22 O -0.369 6.369 23 C 0.402 3.598 24 F -0.207 7.207 25 F -0.211 7.211 26 C -0.211 4.211 27 C -0.139 4.139 28 H 0.263 0.737 29 H 0.135 0.865 30 H 0.098 0.902 31 H 0.411 0.589 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.084 0.916 37 H 0.076 0.924 38 H 0.167 0.833 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.066 0.934 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.679 -15.236 10.953 19.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.512 5.512 2 C -0.124 4.124 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.192 1.192 7 C -0.549 4.549 8 H 0.087 0.913 9 C 0.039 3.961 10 C -0.684 4.684 11 S 2.700 3.300 12 O -0.962 6.962 13 O -0.938 6.938 14 N -0.881 5.881 15 C 0.042 3.958 16 H 0.126 0.874 17 C -0.188 4.188 18 C -0.157 4.157 19 C -0.180 4.180 20 C 0.011 3.989 21 H 0.105 0.895 22 O -0.290 6.290 23 C 0.311 3.689 24 F -0.189 7.189 25 F -0.193 7.193 26 C -0.248 4.248 27 C -0.178 4.178 28 H 0.072 0.928 29 H 0.153 0.847 30 H 0.116 0.884 31 H 0.244 0.756 32 H 0.105 0.895 33 H 0.099 0.901 34 H 0.093 0.907 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.094 0.906 38 H 0.183 0.817 39 H 0.105 0.895 40 H 0.094 0.906 41 H 0.085 0.915 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -2.852 -15.178 10.490 18.669 hybrid contribution -0.444 1.287 0.672 1.519 sum -3.296 -13.890 11.162 18.122 Atomic orbital electron populations 1.69978 1.05999 1.27135 1.48078 1.24948 0.94820 0.99203 0.93417 0.86584 0.80580 0.82777 0.78227 1.20441 1.21034 1.19166 1.20540 0.93462 0.88457 1.52465 0.91308 1.18298 0.99274 0.94327 0.84158 1.29998 1.16580 1.08502 1.13317 1.05300 0.76761 0.73693 0.74264 1.93505 1.68762 1.54938 1.78965 1.93561 1.72046 1.50252 1.77929 1.56176 1.70184 1.34916 1.26809 1.21363 0.91468 0.84504 0.98498 0.87357 1.22789 0.93661 1.02821 0.99502 1.22257 0.98426 0.97048 0.98016 1.22987 0.93308 0.99131 1.02525 1.23533 0.87593 0.88703 0.99056 0.89460 1.88487 1.52906 1.57453 1.30192 1.23199 0.84450 0.84838 0.76457 1.93078 1.81339 1.56846 1.87596 1.93062 1.69806 1.88057 1.68349 1.23222 0.98999 0.96041 1.06546 1.22537 0.92246 1.00997 1.02013 0.92784 0.84724 0.88386 0.75590 0.89513 0.90080 0.90717 0.91093 0.89783 0.90563 0.81652 0.89527 0.90626 0.91540 0.89560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.89 12.94 55.43 0.72 -23.17 16 2 C 0.08 2.19 5.39 -17.82 -0.10 2.10 16 3 Si 0.89 21.39 29.55 -169.99 -5.02 16.37 16 4 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 5 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 6 H -0.27 -6.51 7.11 56.52 0.40 -6.10 16 7 C -0.51 -13.97 8.02 -34.44 -0.28 -14.24 16 8 H 0.07 1.93 7.82 -52.48 -0.41 1.52 16 9 C 0.04 1.01 1.32 -155.66 -0.21 0.80 16 10 C -0.55 -11.25 5.91 37.16 0.22 -11.03 16 11 S 2.60 52.49 5.23 -107.50 -0.56 51.93 16 12 O -0.97 -21.41 17.42 -57.54 -1.00 -22.41 16 13 O -0.95 -22.75 17.53 -57.54 -1.01 -23.76 16 14 N -1.13 -16.87 5.28 -3.94 -0.02 -16.89 16 15 C 0.15 1.92 3.23 -66.81 -0.22 1.70 16 16 H 0.11 1.48 7.44 -51.93 -0.39 1.09 16 17 C -0.15 -1.57 6.37 -25.62 -0.16 -1.73 16 18 C -0.12 -1.02 6.83 -25.07 -0.17 -1.19 16 19 C -0.14 -1.26 6.22 -24.73 -0.15 -1.41 16 20 C 0.07 0.78 2.72 -25.07 -0.07 0.72 16 21 H 0.09 0.96 6.95 -51.93 -0.36 0.60 16 22 O -0.37 -4.34 10.35 -35.23 -0.36 -4.71 16 23 C 0.40 3.78 6.26 101.05 0.63 4.41 16 24 F -0.21 -2.41 16.67 2.25 0.04 -2.37 16 25 F -0.21 -2.03 16.57 2.25 0.04 -1.99 16 26 C -0.21 -4.59 9.96 -26.70 -0.27 -4.85 16 27 C -0.14 -3.12 9.45 -26.70 -0.25 -3.37 16 28 H 0.26 6.84 8.32 -40.82 -0.34 6.50 16 29 H 0.13 2.84 8.14 -51.92 -0.42 2.42 16 30 H 0.10 1.66 7.88 -51.93 -0.41 1.25 16 31 H 0.41 5.42 8.60 -34.47 -0.30 5.12 16 32 H 0.09 0.96 7.92 -51.93 -0.41 0.55 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.08 0.63 7.91 -51.93 -0.41 0.22 16 38 H 0.17 0.89 8.14 -51.93 -0.42 0.47 16 39 H 0.09 1.87 8.14 -51.93 -0.42 1.44 16 40 H 0.08 1.49 8.14 -51.93 -0.42 1.07 16 41 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 42 H 0.09 2.06 8.14 -51.93 -0.42 1.63 16 LS Contribution 368.78 15.07 5.56 5.56 Total: -1.00 -33.64 368.78 -8.70 -42.34 By element: Atomic # 1 Polarization: 13.26 SS G_CDS: -6.05 Total: 7.21 kcal Atomic # 6 Polarization: -27.08 SS G_CDS: -1.02 Total: -28.10 kcal Atomic # 7 Polarization: -40.76 SS G_CDS: 0.70 Total: -40.06 kcal Atomic # 8 Polarization: -48.50 SS G_CDS: -2.38 Total: -50.87 kcal Atomic # 9 Polarization: -4.44 SS G_CDS: 0.07 Total: -4.36 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 52.49 SS G_CDS: -0.56 Total: 51.93 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.64 -8.70 -42.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451503176.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -172.420 kcal (2) G-P(sol) polarization free energy of solvation -33.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -206.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds