Wall clock time and date at job start Tue Mar 31 2020 22:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00167 * 2 1 4 4 H 1.48503 * 109.47088 * 269.99142 * 3 2 1 5 5 H 1.48496 * 109.47509 * 29.99815 * 3 2 1 6 6 H 1.48503 * 109.47054 * 149.99860 * 3 2 1 7 7 C 1.37882 * 119.99372 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99383 * 186.27801 * 7 2 1 9 9 C 1.50697 * 120.00294 * 6.27223 * 7 2 1 10 10 C 1.53002 * 115.55333 * 275.22545 * 9 7 2 11 11 S 1.81397 * 109.47029 * 294.30074 * 10 9 7 12 12 O 1.42100 * 110.54295 * 293.44344 * 11 10 9 13 13 O 1.42100 * 110.54393 * 70.19377 * 11 10 9 14 14 N 1.65597 * 104.44909 * 181.81779 * 11 10 9 15 15 C 1.46501 * 119.99935 * 64.99648 * 14 11 10 16 16 H 1.08997 * 110.01728 * 23.61400 * 15 14 11 17 17 C 1.53869 * 110.03560 * 262.16736 * 15 14 11 18 18 C 1.54267 * 106.60110 * 240.71485 * 17 15 14 19 19 C 1.54888 * 104.19457 * 336.39008 * 18 17 15 20 20 C 1.54266 * 110.03058 * 144.99698 * 15 14 11 21 21 H 1.09004 * 110.48831 * 24.09210 * 20 15 14 22 22 O 1.42897 * 110.49321 * 261.57701 * 20 15 14 23 23 C 1.42901 * 114.00297 * 150.00172 * 22 20 15 24 24 F 1.39901 * 109.46941 * 300.00147 * 23 22 20 25 25 F 1.39901 * 109.47136 * 60.00111 * 23 22 20 26 26 C 1.53000 * 117.49657 * 129.55505 * 9 7 2 27 27 C 1.52997 * 117.49648 * 60.89885 * 9 7 2 28 28 H 0.96998 * 119.99779 * 354.99376 * 1 2 3 29 29 H 1.09004 * 109.46683 * 54.29981 * 10 9 7 30 30 H 1.08996 * 109.46977 * 174.30114 * 10 9 7 31 31 H 0.97000 * 120.00289 * 245.00098 * 14 11 10 32 32 H 1.09003 * 110.03027 * 0.02562 * 17 15 14 33 33 H 1.09000 * 110.03048 * 121.43085 * 17 15 14 34 34 H 1.09000 * 110.48937 * 217.71321 * 18 17 15 35 35 H 1.08997 * 110.59974 * 95.12163 * 18 17 15 36 36 H 1.08996 * 110.75577 * 279.62812 * 19 18 17 37 37 H 1.08998 * 110.75521 * 156.25261 * 19 18 17 38 38 H 1.08995 * 109.46732 * 180.02562 * 23 22 20 39 39 H 1.08997 * 117.49996 * 0.02562 * 26 9 7 40 40 H 1.09006 * 117.49892 * 145.02230 * 26 9 7 41 41 H 1.09002 * 117.49941 * 214.97793 * 27 9 7 42 42 H 1.09003 * 117.49905 * 359.97438 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4969 2.0462 -1.4001 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1942 0.0005 8 1 3.0796 -1.1969 0.1028 9 6 1.2576 -2.4954 -0.1415 10 6 0.6920 -3.0766 1.1559 11 16 2.0574 -3.5467 2.2537 12 8 2.7943 -4.6273 1.6982 13 8 2.7160 -2.3910 2.7534 14 7 1.3139 -4.1993 3.5817 15 6 0.5425 -5.4383 3.4544 16 1 0.8848 -6.0035 2.5875 17 6 -0.9554 -5.1149 3.3161 18 6 -1.6624 -5.7798 4.5153 19 6 -0.7049 -6.9228 4.9346 20 6 0.6937 -6.2885 4.7327 21 1 0.9546 -5.6573 5.5822 22 8 1.6810 -7.3043 4.5441 23 6 2.3700 -7.6744 5.7401 24 9 3.0242 -6.5554 6.2666 25 9 1.4511 -8.1607 6.6762 26 6 1.7528 -3.4821 -1.2008 27 6 0.4499 -2.7100 -1.4230 28 1 -0.4850 0.8368 0.0733 29 1 0.0707 -2.3286 1.6485 30 1 0.0899 -3.9561 0.9278 31 1 1.3890 -3.7612 4.4438 32 1 -1.1085 -4.0360 3.3433 33 1 -1.3409 -5.5234 2.3820 34 1 -2.6287 -6.1833 4.2126 35 1 -1.7860 -5.0673 5.3308 36 1 -0.8326 -7.7905 4.2874 37 1 -0.8596 -7.1926 5.9792 38 1 3.1021 -8.4492 5.5126 39 1 2.6189 -3.1902 -1.7946 40 1 1.6752 -4.5453 -0.9736 41 1 -0.4844 -3.2656 -1.3419 42 1 0.4583 -1.9099 -2.1632 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000451503176.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:32:18 Heat of formation + Delta-G solvation = -238.704945 kcal Electronic energy + Delta-G solvation = -29112.437770 eV Core-core repulsion = 24661.407551 eV Total energy + Delta-G solvation = -4451.030219 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 339.115 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.03863 -48.15063 -40.29268 -38.56258 -37.95735 -37.39542 -36.80712 -34.37851 -34.07261 -29.96183 -29.20469 -28.18947 -27.47646 -25.96278 -22.98402 -22.18652 -21.73019 -21.28296 -20.40712 -19.46799 -19.03458 -18.60578 -18.37832 -18.16258 -17.40489 -16.86751 -16.58785 -16.35204 -16.16549 -15.61523 -15.30427 -15.01811 -14.92484 -14.80113 -14.54723 -14.39128 -14.06664 -13.77466 -13.68878 -13.61483 -13.28662 -13.12705 -13.04883 -12.92035 -12.89182 -12.84255 -12.55443 -12.45762 -12.21086 -12.05183 -11.89548 -11.80745 -11.58184 -11.52610 -11.40990 -10.89691 -10.55239 -10.44813 -9.87005 -8.18601 -6.32467 -0.52759 1.37612 1.39923 1.51023 1.89834 2.10739 2.40529 2.72378 2.95549 3.08013 3.29960 3.35480 3.42099 3.58410 3.73959 3.83112 3.89945 4.01361 4.14826 4.19564 4.34272 4.39799 4.42365 4.49605 4.53506 4.61825 4.71150 4.84766 4.95776 4.98823 5.04351 5.17932 5.20480 5.23525 5.42414 5.48267 5.60537 5.64082 5.72774 6.06209 6.23656 6.73131 7.39365 8.88379 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.018651 B = 0.003543 C = 0.003390 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.860413 B = 7901.799831 C = 8256.666048 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.043 3.957 3 Si 0.934 3.066 4 H -0.269 1.269 5 H -0.274 1.274 6 H -0.278 1.278 7 C -0.531 4.531 8 H 0.046 0.954 9 C 0.008 3.992 10 C -0.543 4.543 11 S 2.617 3.383 12 O -0.994 6.994 13 O -0.995 6.995 14 N -1.112 6.112 15 C 0.139 3.861 16 H 0.099 0.901 17 C -0.150 4.150 18 C -0.114 4.114 19 C -0.132 4.132 20 C 0.064 3.936 21 H 0.086 0.914 22 O -0.386 6.386 23 C 0.396 3.604 24 F -0.223 7.223 25 F -0.212 7.212 26 C -0.200 4.200 27 C -0.133 4.133 28 H 0.265 0.735 29 H 0.127 0.873 30 H 0.134 0.866 31 H 0.420 0.580 32 H 0.081 0.919 33 H 0.093 0.907 34 H 0.093 0.907 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.208 0.792 39 H 0.081 0.919 40 H 0.099 0.901 41 H 0.091 0.909 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.042 -16.741 11.521 20.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.160 4.160 3 Si 0.759 3.241 4 H -0.195 1.195 5 H -0.199 1.199 6 H -0.203 1.203 7 C -0.569 4.569 8 H 0.064 0.936 9 C 0.006 3.994 10 C -0.676 4.676 11 S 2.715 3.285 12 O -0.983 6.983 13 O -0.985 6.985 14 N -0.872 5.872 15 C 0.032 3.968 16 H 0.117 0.883 17 C -0.190 4.190 18 C -0.151 4.151 19 C -0.170 4.170 20 C 0.005 3.995 21 H 0.104 0.896 22 O -0.308 6.308 23 C 0.305 3.695 24 F -0.205 7.205 25 F -0.194 7.194 26 C -0.237 4.237 27 C -0.172 4.172 28 H 0.074 0.926 29 H 0.145 0.855 30 H 0.152 0.848 31 H 0.255 0.745 32 H 0.099 0.901 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.094 0.906 36 H 0.108 0.892 37 H 0.104 0.896 38 H 0.224 0.776 39 H 0.099 0.901 40 H 0.118 0.882 41 H 0.109 0.891 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.217 -16.681 11.056 20.452 hybrid contribution -0.001 1.683 0.520 1.762 sum -4.219 -14.998 11.576 19.410 Atomic orbital electron populations 1.70012 1.06451 1.27728 1.48547 1.25479 0.95637 1.01389 0.93447 0.85932 0.79221 0.80365 0.78559 1.19463 1.19936 1.20321 1.20696 0.92799 0.90618 1.52772 0.93578 1.18435 1.00649 0.94214 0.86134 1.29838 1.16613 1.09549 1.11645 1.04537 0.76646 0.72653 0.74639 1.93469 1.69780 1.55221 1.79869 1.93494 1.73738 1.52335 1.78921 1.55693 1.70214 1.35646 1.25606 1.21682 0.92514 0.83426 0.99208 0.88251 1.22818 0.92089 1.02830 1.01229 1.22263 0.98839 0.96809 0.97214 1.22954 0.91546 0.99281 1.03260 1.23608 0.89023 0.88877 0.97958 0.89642 1.88465 1.53267 1.57425 1.31611 1.23863 0.84804 0.85077 0.75709 1.93047 1.81616 1.58015 1.87820 1.93054 1.70038 1.87911 1.68397 1.23269 0.98517 0.96925 1.05022 1.22496 0.93544 1.00723 1.00472 0.92559 0.85520 0.84771 0.74487 0.90064 0.88860 0.88864 0.90580 0.89187 0.89648 0.77588 0.90059 0.88221 0.89091 0.91607 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -48.49 12.94 21.45 0.28 -48.21 16 2 C 0.04 2.37 5.39 84.66 0.46 2.82 16 3 Si 0.93 44.11 29.55 68.60 2.03 46.14 16 4 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 5 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 6 H -0.28 -13.51 7.11 99.48 0.71 -12.80 16 7 C -0.53 -29.47 8.02 25.60 0.21 -29.26 16 8 H 0.05 2.69 7.82 -2.91 -0.02 2.66 16 9 C 0.01 0.38 1.32 -52.93 -0.07 0.31 16 10 C -0.54 -21.71 5.91 71.98 0.43 -21.28 16 11 S 2.62 105.54 5.23 -56.49 -0.30 105.24 16 12 O -0.99 -43.53 17.42 -127.65 -2.22 -45.75 16 13 O -0.99 -48.94 17.53 -127.65 -2.24 -51.18 16 14 N -1.11 -32.60 5.28 -166.38 -0.88 -33.48 16 15 C 0.14 3.33 3.23 45.71 0.15 3.48 16 16 H 0.10 2.57 7.44 -2.39 -0.02 2.55 16 17 C -0.15 -2.81 6.37 31.32 0.20 -2.61 16 18 C -0.11 -1.59 6.83 31.67 0.22 -1.37 16 19 C -0.13 -2.00 6.22 31.89 0.20 -1.81 16 20 C 0.06 1.33 2.72 31.67 0.09 1.42 16 21 H 0.09 1.78 6.95 -2.38 -0.02 1.76 16 22 O -0.39 -8.45 10.35 -148.98 -1.54 -9.99 16 23 C 0.40 6.73 6.26 113.37 0.71 7.44 16 24 F -0.22 -4.98 16.67 44.97 0.75 -4.23 16 25 F -0.21 -3.67 16.57 44.97 0.75 -2.92 16 26 C -0.20 -8.50 9.96 30.62 0.30 -8.19 16 27 C -0.13 -5.84 9.45 30.62 0.29 -5.55 16 28 H 0.27 13.73 8.32 -92.71 -0.77 12.96 16 29 H 0.13 5.29 8.14 -2.39 -0.02 5.27 16 30 H 0.13 4.24 7.88 -2.39 -0.02 4.22 16 31 H 0.42 10.93 8.60 -96.75 -0.83 10.09 16 32 H 0.08 1.63 7.92 -2.39 -0.02 1.61 16 33 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 34 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.08 1.00 8.14 -2.39 -0.02 0.99 16 36 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 37 H 0.08 1.17 7.91 -2.39 -0.02 1.15 16 38 H 0.21 1.68 8.14 -2.39 -0.02 1.66 16 39 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 40 H 0.10 3.72 8.14 -2.38 -0.02 3.70 16 41 H 0.09 3.49 8.14 -2.39 -0.02 3.47 16 42 H 0.07 3.13 8.14 -2.39 -0.02 3.11 16 Total: -1.00 -72.61 368.78 0.00 -72.61 By element: Atomic # 1 Polarization: 26.18 SS G_CDS: 0.21 Total: 26.39 kcal Atomic # 6 Polarization: -57.78 SS G_CDS: 3.17 Total: -54.61 kcal Atomic # 7 Polarization: -81.09 SS G_CDS: -0.60 Total: -81.69 kcal Atomic # 8 Polarization: -100.92 SS G_CDS: -6.00 Total: -106.92 kcal Atomic # 9 Polarization: -8.65 SS G_CDS: 1.50 Total: -7.16 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 2.03 Total: 46.14 kcal Atomic # 16 Polarization: 105.54 SS G_CDS: -0.30 Total: 105.24 kcal Total: -72.61 0.00 -72.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000451503176.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -166.095 kcal (2) G-P(sol) polarization free energy of solvation -72.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.001 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -238.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds