Wall clock time and date at job start Tue Mar 31 2020 23:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52997 * 109.46995 * 2 1 4 4 N 1.46501 * 109.47201 * 179.97438 * 3 2 1 5 5 C 1.34776 * 120.00181 * 180.02562 * 4 3 2 6 6 O 1.21540 * 119.99981 * 359.97438 * 5 4 3 7 7 N 1.34779 * 119.99865 * 180.02562 * 5 4 3 8 8 C 1.34776 * 119.99865 * 179.97438 * 7 5 4 9 9 O 1.21239 * 119.99802 * 359.97438 * 8 7 5 10 10 C 1.50699 * 120.00033 * 179.97438 * 8 7 5 11 11 N 1.46506 * 109.47326 * 179.97438 * 10 8 7 12 12 C 1.38892 * 120.00174 * 179.97438 * 11 10 8 13 13 C 1.39543 * 119.84649 * 359.72334 * 12 11 10 14 14 C 1.36348 * 120.17231 * 180.27360 * 13 12 11 15 15 C 1.40902 * 119.85570 * 0.02562 * 14 13 12 16 16 C 1.41130 * 120.15040 * 179.97438 * 15 14 13 17 17 H 1.07994 * 120.00543 * 24.60202 * 16 15 14 18 18 C 1.39868 * 119.99715 * 204.60336 * 16 15 14 19 19 N 1.30907 * 119.99886 * 17.97235 * 18 16 15 20 20 Si 1.86805 * 119.99790 * 197.96863 * 18 16 15 21 21 H 1.48494 * 109.46809 * 90.00170 * 20 18 16 22 22 H 1.48501 * 109.46793 * 210.00366 * 20 18 16 23 23 H 1.48504 * 109.46835 * 329.99987 * 20 18 16 24 24 C 1.40866 * 119.69981 * 359.97438 * 15 14 13 25 25 C 1.36438 * 119.82555 * 359.97438 * 24 15 14 26 26 Cl 1.73600 * 119.92894 * 179.97438 * 25 24 15 27 27 H 1.09002 * 109.46735 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46740 * 300.00087 * 1 2 3 29 29 H 1.08995 * 109.46840 * 60.00148 * 1 2 3 30 30 H 1.09001 * 109.47363 * 240.00325 * 2 1 3 31 31 H 1.08998 * 109.47322 * 120.00023 * 2 1 3 32 32 H 1.08999 * 109.47448 * 60.00346 * 3 2 1 33 33 H 1.09001 * 109.47590 * 300.00206 * 3 2 1 34 34 H 0.97001 * 119.99774 * 0.02562 * 4 3 2 35 35 H 0.97001 * 120.00090 * 359.97438 * 7 5 4 36 36 H 1.09001 * 109.47499 * 60.00018 * 10 8 7 37 37 H 1.09007 * 109.47076 * 299.99507 * 10 8 7 38 38 H 0.97003 * 119.99284 * 359.97438 * 11 10 8 39 39 H 1.08002 * 119.91798 * 0.27829 * 13 12 11 40 40 H 1.08000 * 120.07068 * 180.02562 * 14 13 12 41 41 H 0.97008 * 119.99624 * 179.97438 * 19 18 16 42 42 H 1.08000 * 120.08805 * 180.02562 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 0.0006 5 6 4.1789 2.6097 0.0012 6 8 3.5712 3.6623 0.0008 7 7 5.5267 2.6097 0.0013 8 6 6.2006 3.7769 0.0014 9 8 5.5943 4.8268 0.0010 10 6 7.7075 3.7769 0.0020 11 7 8.1959 5.1582 0.0014 12 6 9.5615 5.4120 0.0024 13 6 10.4654 4.3489 0.0098 14 6 11.8073 4.5905 0.0164 15 6 12.2812 5.9174 0.0163 16 6 13.6688 6.1746 0.0237 17 1 14.3570 5.4361 -0.3602 18 6 14.1528 7.3860 0.5282 19 7 13.3952 8.1226 1.3009 20 14 15.8805 7.9526 0.0995 21 1 15.8400 8.7705 -1.1392 22 1 16.4245 8.7691 1.2143 23 1 16.7502 6.7686 -0.1171 24 6 11.3636 6.9862 0.0088 25 6 10.0235 6.7300 0.0012 26 17 8.8903 8.0451 -0.0074 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6767 1.9564 -0.8899 34 1 3.9900 0.6025 0.0006 35 1 6.0117 1.7696 0.0013 36 1 8.0713 3.2630 -0.8877 37 1 8.0705 3.2633 0.8924 38 1 7.5655 5.8954 0.0003 39 1 10.1012 3.3322 0.0102 40 1 12.5055 3.7665 0.0217 41 1 13.7310 8.9626 1.6511 42 1 11.7199 8.0057 0.0083 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453121376.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 23:08:49 Heat of formation + Delta-G solvation = -54.186287 kcal Electronic energy + Delta-G solvation = -25500.898533 eV Core-core repulsion = 21506.515124 eV Total energy + Delta-G solvation = -3994.383409 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.32691 -38.95542 -38.01099 -36.15791 -35.34352 -34.96863 -34.79537 -33.00376 -32.84161 -29.76888 -29.18191 -27.62598 -26.48246 -24.27745 -22.70300 -22.07096 -21.17868 -20.62379 -20.34450 -19.00111 -17.73386 -17.27109 -16.61135 -16.17359 -15.78132 -15.76795 -15.47779 -14.97257 -14.69323 -14.66180 -14.22908 -13.70198 -13.43582 -13.31381 -12.97610 -12.82737 -12.80116 -12.55567 -12.36521 -12.13775 -11.73191 -11.66227 -11.41952 -11.18571 -11.12247 -11.03564 -10.79883 -10.40321 -10.30678 -10.22741 -9.78947 -9.71540 -9.61160 -9.49410 -9.40814 -8.73395 -7.53759 -6.79345 -6.56406 -4.20034 1.93340 2.04032 2.70252 2.83748 3.07708 3.10750 3.13337 3.20416 3.35586 3.54434 3.96640 4.22351 4.30348 4.43510 4.45419 4.57643 4.70081 5.11537 5.11965 5.22676 5.31965 5.38286 5.48244 5.59747 5.60133 5.66258 5.84982 5.98510 5.99311 6.18010 6.40511 6.77721 6.91144 7.10680 7.20000 7.26215 7.36482 7.55552 7.85450 7.87128 8.10864 8.11795 8.20810 8.48943 8.57198 8.88117 8.90751 10.23431 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.032055 B = 0.001903 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.291347 B =14707.389912 C =15470.873949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.135 4.135 3 C 0.133 3.867 4 N -0.741 5.741 5 C 0.693 3.307 6 O -0.529 6.529 7 N -0.691 5.691 8 C 0.512 3.488 9 O -0.459 6.459 10 C 0.125 3.875 11 N -0.749 5.749 12 C 0.097 3.903 13 C -0.149 4.149 14 C -0.185 4.185 15 C 0.085 3.915 16 C -0.462 4.462 17 H 0.078 0.922 18 C 0.074 3.926 19 N -0.797 5.797 20 Si 0.907 3.093 21 H -0.268 1.268 22 H -0.279 1.279 23 H -0.263 1.263 24 C -0.119 4.119 25 C -0.058 4.058 26 Cl -0.118 7.118 27 H 0.060 0.940 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.069 0.931 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.398 0.602 35 H 0.411 0.589 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.403 0.597 39 H 0.098 0.902 40 H 0.099 0.901 41 H 0.281 0.719 42 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.004 -17.133 -1.909 23.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.173 4.173 3 C 0.009 3.991 4 N -0.398 5.398 5 C 0.393 3.607 6 O -0.401 6.401 7 N -0.358 5.358 8 C 0.298 3.702 9 O -0.326 6.326 10 C -0.004 4.004 11 N -0.390 5.390 12 C -0.001 4.001 13 C -0.172 4.172 14 C -0.205 4.205 15 C 0.082 3.918 16 C -0.492 4.492 17 H 0.096 0.904 18 C -0.143 4.143 19 N -0.423 5.423 20 Si 0.731 3.269 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.187 1.187 24 C -0.139 4.139 25 C -0.088 4.088 26 Cl -0.090 7.090 27 H 0.079 0.921 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.232 0.768 35 H 0.246 0.754 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.241 0.759 39 H 0.116 0.884 40 H 0.117 0.883 41 H 0.091 0.909 42 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -17.041 -15.284 -1.760 22.959 hybrid contribution 0.954 -0.342 -0.040 1.015 sum -16.087 -15.627 -1.800 22.499 Atomic orbital electron populations 1.21678 0.94328 1.02275 1.02534 1.21740 0.97152 0.95578 1.02841 1.21355 0.77574 0.97293 1.02874 1.45261 1.07723 1.06896 1.79957 1.16145 0.81329 0.84837 0.78430 1.91088 1.66945 1.29800 1.52219 1.44126 1.06817 1.11656 1.73166 1.21155 0.90868 0.82779 0.75427 1.90832 1.69657 1.30389 1.41676 1.20784 0.87417 0.88956 1.03286 1.43672 1.04334 1.03980 1.87030 1.16910 0.82494 0.91508 1.09202 1.19803 0.93144 0.94974 1.09237 1.20630 0.93536 0.96439 1.09903 1.17396 0.93355 0.89902 0.91178 1.19379 0.92118 1.01181 1.36560 0.90361 1.25866 0.99658 0.96087 0.92675 1.69835 1.37882 1.11978 1.22612 0.86339 0.82126 0.79408 0.78987 1.19365 1.20439 1.18730 1.20922 0.88680 1.01060 1.03237 1.20061 0.90271 0.84835 1.13616 1.98254 1.63050 1.50012 1.97708 0.92064 0.92219 0.92230 0.91179 0.91173 0.91259 0.91256 0.76760 0.75421 0.89631 0.89614 0.75852 0.88410 0.88298 0.90854 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.56 9.91 37.16 0.37 -0.20 16 2 C -0.14 -0.51 6.05 -26.73 -0.16 -0.67 16 3 C 0.13 0.90 5.67 -4.04 -0.02 0.88 16 4 N -0.74 -5.18 5.56 -65.24 -0.36 -5.54 16 5 C 0.69 8.18 8.50 -86.92 -0.74 7.44 16 6 O -0.53 -9.33 14.74 -18.47 -0.27 -9.60 16 7 N -0.69 -6.59 5.24 -15.78 -0.08 -6.68 16 8 C 0.51 7.11 7.84 -10.99 -0.09 7.02 16 9 O -0.46 -8.83 14.07 -18.21 -0.26 -9.09 16 10 C 0.13 1.64 5.37 -5.19 -0.03 1.61 16 11 N -0.75 -13.77 5.63 -59.64 -0.34 -14.11 16 12 C 0.10 2.06 6.67 -83.64 -0.56 1.50 16 13 C -0.15 -3.02 9.23 -39.78 -0.37 -3.38 16 14 C -0.18 -4.17 9.74 -39.25 -0.38 -4.55 16 15 C 0.09 2.17 5.57 -106.80 -0.60 1.58 16 16 C -0.46 -11.83 9.03 -37.88 -0.34 -12.18 16 17 H 0.08 1.92 7.91 -52.49 -0.41 1.50 16 18 C 0.07 1.83 5.13 -17.34 -0.09 1.74 16 19 N -0.80 -20.50 10.96 55.54 0.61 -19.89 16 20 Si 0.91 18.51 29.60 -169.99 -5.03 13.47 16 21 H -0.27 -5.46 7.11 56.52 0.40 -5.06 16 22 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 24 C -0.12 -3.02 8.40 -39.24 -0.33 -3.35 16 25 C -0.06 -1.36 6.30 -39.70 -0.25 -1.61 16 26 Cl -0.12 -2.54 27.55 -51.86 -1.43 -3.97 16 27 H 0.06 0.19 8.14 -51.93 -0.42 -0.24 16 28 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 30 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 32 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.40 1.29 8.49 -40.82 -0.35 0.95 16 35 H 0.41 1.78 8.71 -40.82 -0.36 1.42 16 36 H 0.09 0.93 7.93 -51.93 -0.41 0.52 16 37 H 0.09 0.96 7.92 -51.93 -0.41 0.55 16 38 H 0.40 8.02 6.07 -40.82 -0.25 7.77 16 39 H 0.10 1.59 6.68 -52.49 -0.35 1.24 16 40 H 0.10 2.06 8.06 -52.49 -0.42 1.63 16 41 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 42 H 0.13 3.54 6.16 -52.49 -0.32 3.22 16 LS Contribution 371.31 15.07 5.60 5.60 Total: -1.00 -34.27 371.31 -10.53 -44.80 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -5.38 Total: 9.20 kcal Atomic # 6 Polarization: -0.60 SS G_CDS: -3.58 Total: -4.18 kcal Atomic # 7 Polarization: -46.05 SS G_CDS: -0.17 Total: -46.22 kcal Atomic # 8 Polarization: -18.17 SS G_CDS: -0.53 Total: -18.69 kcal Atomic # 14 Polarization: 18.51 SS G_CDS: -5.03 Total: 13.47 kcal Atomic # 17 Polarization: -2.54 SS G_CDS: -1.43 Total: -3.97 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -34.27 -10.53 -44.80 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453121376.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.388 kcal (2) G-P(sol) polarization free energy of solvation -34.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds