Wall clock time and date at job start Tue Mar 31 2020 22:53:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47483 * 2 1 4 4 C 1.52993 * 109.47483 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47334 * 54.99972 * 4 3 2 6 6 N 1.46510 * 109.47065 * 295.00100 * 4 3 2 7 7 C 1.34777 * 119.99607 * 155.00131 * 6 4 3 8 8 O 1.21578 * 120.00421 * 359.97438 * 7 6 4 9 9 N 1.34779 * 119.99797 * 180.02562 * 7 6 4 10 10 C 1.39271 * 120.00052 * 175.32023 * 9 7 6 11 11 C 1.39461 * 119.83961 * 34.43721 * 10 9 7 12 12 C 1.36379 * 120.17809 * 179.71983 * 11 10 9 13 13 C 1.40888 * 119.84782 * 0.56565 * 12 11 10 14 14 C 1.41154 * 120.15723 * 179.72392 * 13 12 11 15 15 H 1.07998 * 120.00136 * 148.71894 * 14 13 12 16 16 C 1.39895 * 119.99719 * 328.72368 * 14 13 12 17 17 N 1.30888 * 119.99401 * 167.72499 * 16 14 13 18 18 Si 1.86796 * 120.00081 * 347.72068 * 16 14 13 19 19 H 1.48498 * 109.47156 * 92.59468 * 18 16 14 20 20 H 1.48505 * 109.46804 * 212.58656 * 18 16 14 21 21 H 1.48496 * 109.47418 * 332.58872 * 18 16 14 22 22 C 1.40842 * 119.68268 * 359.70650 * 13 12 11 23 23 C 1.36473 * 119.82086 * 359.97438 * 22 13 12 24 24 Cl 1.73594 * 119.92518 * 180.02562 * 23 22 13 25 25 C 1.50701 * 109.47230 * 175.00330 * 4 3 2 26 26 N 1.34776 * 119.99838 * 299.99854 * 25 4 3 27 27 O 1.21274 * 119.99937 * 120.00103 * 25 4 3 28 28 H 1.09003 * 109.47142 * 60.00159 * 1 2 3 29 29 H 1.09001 * 109.47102 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47252 * 300.00244 * 1 2 3 31 31 H 1.09004 * 109.47418 * 240.00277 * 2 1 3 32 32 H 1.09002 * 109.47383 * 120.00331 * 2 1 3 33 33 H 1.09004 * 109.46567 * 59.99756 * 3 2 1 34 34 H 1.09002 * 109.47081 * 300.00516 * 3 2 1 35 35 H 0.96991 * 119.99619 * 335.00014 * 6 4 3 36 36 H 0.97007 * 119.99476 * 355.32280 * 9 7 6 37 37 H 1.08001 * 119.90811 * 359.97438 * 11 10 9 38 38 H 1.08004 * 120.07018 * 180.27086 * 12 11 10 39 39 H 0.97003 * 119.99371 * 179.97438 * 17 16 14 40 40 H 1.08007 * 120.08600 * 180.02562 * 22 13 12 41 41 H 0.97000 * 120.00020 * 359.97438 * 26 25 4 42 42 H 0.96993 * 119.99831 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8409 6 7 4.0578 0.8589 1.2528 7 6 5.2798 0.2924 1.3011 8 8 5.9771 0.2652 0.3055 9 7 5.7283 -0.2450 2.4529 10 6 6.9484 -0.9160 2.4795 11 6 7.9968 -0.4823 1.6684 12 6 9.1963 -1.1308 1.6932 13 6 9.3716 -2.2491 2.5321 14 6 10.6085 -2.9287 2.5585 15 1 10.9424 -3.4071 3.4674 16 6 11.4017 -2.9824 1.4075 17 7 12.6413 -3.3952 1.4859 18 14 10.6919 -2.4652 -0.2411 19 1 10.9818 -1.0278 -0.4758 20 1 11.3072 -3.2771 -1.3216 21 1 9.2225 -2.6795 -0.2365 22 6 8.3069 -2.6853 3.3444 23 6 7.1143 -2.0226 3.3140 24 17 5.8005 -2.5575 4.3145 25 6 4.0724 2.8579 -0.1231 26 7 3.7473 3.5964 -1.2026 27 8 4.7693 3.3324 0.7487 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.5013 0.8803 2.0469 36 1 5.2013 -0.1643 3.2633 37 1 7.8596 0.3720 1.0221 38 1 10.0083 -0.7907 1.0676 39 1 13.1913 -3.4328 0.6877 40 1 8.4343 -3.5416 3.9902 41 1 3.1902 3.2167 -1.9001 42 1 4.0709 4.5072 -1.2825 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455700334.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:29 Heat of formation + Delta-G solvation = -64.099638 kcal Electronic energy + Delta-G solvation = -26963.551990 eV Core-core repulsion = 22968.738705 eV Total energy + Delta-G solvation = -3994.813284 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.57287 -39.34189 -37.83477 -36.30801 -35.77100 -34.45300 -33.89123 -33.48988 -33.04109 -30.08382 -29.78042 -28.86187 -25.32265 -24.62729 -21.97504 -21.73135 -21.64507 -20.48103 -20.28515 -18.27608 -17.90517 -17.56789 -17.08003 -16.85636 -15.78859 -15.26361 -15.01855 -14.95254 -14.65841 -14.32687 -14.25800 -14.04174 -13.70372 -13.57762 -12.89272 -12.84762 -12.75785 -12.50855 -12.38714 -12.21901 -11.59020 -11.55917 -11.51572 -11.06679 -11.03144 -10.85033 -10.64104 -10.40387 -10.26988 -10.18548 -9.86227 -9.80728 -9.67772 -9.20678 -9.08834 -9.00050 -7.76523 -7.21855 -6.97896 -4.51706 2.27126 2.49835 2.51351 2.76074 2.94136 3.14257 3.23104 3.26784 3.36418 3.68556 3.98831 4.27603 4.41419 4.47380 4.49875 4.62274 4.88043 5.01026 5.10290 5.24195 5.29231 5.40762 5.46945 5.71984 5.79629 5.94526 5.94935 6.25554 6.32642 6.50781 6.57526 6.59392 6.75320 6.91250 7.00401 7.11757 7.22377 7.43595 7.52425 7.76230 7.88192 8.10920 8.26321 8.28695 8.49324 8.70936 8.93575 10.03362 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012785 B = 0.003388 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.456146 B = 8262.137018 C = 9462.785157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.125 4.125 3 C -0.121 4.121 4 C 0.149 3.851 5 H 0.117 0.883 6 N -0.726 5.726 7 C 0.707 3.293 8 O -0.577 6.577 9 N -0.662 5.662 10 C 0.025 3.975 11 C -0.052 4.052 12 C -0.224 4.224 13 C 0.094 3.906 14 C -0.435 4.435 15 H 0.094 0.906 16 C 0.083 3.917 17 N -0.807 5.807 18 Si 0.912 3.088 19 H -0.269 1.269 20 H -0.291 1.291 21 H -0.240 1.240 22 C -0.190 4.190 23 C 0.000 4.000 24 Cl -0.114 7.114 25 C 0.503 3.497 26 N -0.857 5.857 27 O -0.527 6.527 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.068 0.932 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.082 0.918 35 H 0.398 0.602 36 H 0.396 0.604 37 H 0.125 0.875 38 H 0.108 0.892 39 H 0.287 0.713 40 H 0.116 0.884 41 H 0.399 0.601 42 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.392 8.690 -4.863 24.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.159 4.159 4 C 0.039 3.961 5 H 0.135 0.865 6 N -0.382 5.382 7 C 0.408 3.592 8 O -0.454 6.454 9 N -0.308 5.308 10 C -0.070 4.070 11 C -0.072 4.072 12 C -0.244 4.244 13 C 0.090 3.910 14 C -0.463 4.463 15 H 0.112 0.888 16 C -0.137 4.137 17 N -0.431 5.431 18 Si 0.738 3.262 19 H -0.195 1.195 20 H -0.219 1.219 21 H -0.163 1.163 22 C -0.210 4.210 23 C -0.029 4.029 24 Cl -0.086 7.086 25 C 0.285 3.715 26 N -0.422 5.422 27 O -0.401 6.401 28 H 0.073 0.927 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.088 0.912 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.232 0.768 36 H 0.230 0.770 37 H 0.143 0.857 38 H 0.126 0.874 39 H 0.098 0.902 40 H 0.134 0.866 41 H 0.227 0.773 42 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -21.156 8.638 -5.084 23.410 hybrid contribution -0.837 0.480 -0.296 1.010 sum -21.993 9.118 -5.380 24.408 Atomic orbital electron populations 1.21769 0.95482 1.01961 1.01738 1.21539 0.95897 0.95507 1.03319 1.21883 0.91516 0.98877 1.03669 1.20677 0.94546 0.91119 0.89801 0.86525 1.44658 1.17675 1.63130 1.12752 1.15826 0.81144 0.78355 0.83873 1.90892 1.56177 1.63611 1.34739 1.41893 1.21474 1.57848 1.09605 1.16544 0.85885 0.97111 1.07430 1.20508 0.90665 0.99095 0.96950 1.20842 0.97516 0.99339 1.06720 1.17659 0.92246 0.90723 0.90352 1.19446 0.99097 1.28715 0.99048 0.88768 1.26174 0.93698 0.91884 1.01905 1.69671 1.06485 1.34543 1.32361 0.86318 0.82028 0.78387 0.79420 1.19475 1.21902 1.16336 1.20542 0.91128 1.02128 1.07241 1.20295 0.89428 0.95679 0.97456 1.98263 1.50533 1.90094 1.69715 1.21322 0.79870 0.88649 0.81613 1.43868 1.56412 1.18040 1.23906 1.90768 1.36541 1.72515 1.40257 0.92733 0.92482 0.92705 0.91362 0.91198 0.90670 0.89915 0.76822 0.76978 0.85700 0.87435 0.90249 0.86575 0.77258 0.76931 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.80 9.91 37.15 0.37 -0.43 16 2 C -0.12 -0.80 5.82 -26.73 -0.16 -0.96 16 3 C -0.12 -0.73 4.70 -26.73 -0.13 -0.86 16 4 C 0.15 1.53 2.38 -69.08 -0.16 1.36 16 5 H 0.12 1.30 7.58 -51.93 -0.39 0.91 16 6 N -0.73 -9.08 4.06 -59.81 -0.24 -9.33 16 7 C 0.71 12.51 8.23 -86.92 -0.72 11.80 16 8 O -0.58 -12.48 13.36 5.30 0.07 -12.41 16 9 N -0.66 -11.74 5.03 -14.07 -0.07 -11.81 16 10 C 0.02 0.53 6.32 -83.52 -0.53 0.00 16 11 C -0.05 -1.23 8.62 -39.80 -0.34 -1.57 16 12 C -0.22 -5.58 6.94 -39.25 -0.27 -5.85 16 13 C 0.09 2.37 5.13 -106.80 -0.55 1.82 16 14 C -0.43 -11.60 9.59 -37.86 -0.36 -11.96 16 15 H 0.09 2.60 8.06 -52.49 -0.42 2.17 16 16 C 0.08 2.16 5.47 -17.33 -0.09 2.07 16 17 N -0.81 -21.41 13.93 55.55 0.77 -20.64 16 18 Si 0.91 21.41 24.40 -169.99 -4.15 17.26 16 19 H -0.27 -6.20 6.66 56.52 0.38 -5.83 16 20 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 21 H -0.24 -5.90 6.67 56.52 0.38 -5.53 16 22 C -0.19 -4.37 9.50 -39.23 -0.37 -4.74 16 23 C 0.00 0.00 6.30 -39.72 -0.25 -0.25 16 24 Cl -0.11 -1.96 27.91 -51.86 -1.45 -3.40 16 25 C 0.50 6.03 7.46 -10.98 -0.08 5.95 16 26 N -0.86 -6.25 8.74 31.22 0.27 -5.98 16 27 O -0.53 -9.05 17.16 5.56 0.10 -8.95 16 28 H 0.05 0.24 8.14 -51.93 -0.42 -0.18 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.53 7.75 -51.93 -0.40 0.12 16 33 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.31 7.43 -51.93 -0.39 -0.07 16 35 H 0.40 3.89 8.62 -40.82 -0.35 3.54 16 36 H 0.40 5.85 8.06 -40.82 -0.33 5.52 16 37 H 0.13 3.03 6.14 -52.49 -0.32 2.71 16 38 H 0.11 2.68 4.41 -52.48 -0.23 2.45 16 39 H 0.29 6.92 8.30 -40.82 -0.34 6.58 16 40 H 0.12 2.54 8.06 -52.48 -0.42 2.11 16 41 H 0.40 1.54 8.19 -40.82 -0.33 1.20 16 42 H 0.40 2.67 8.93 -40.82 -0.36 2.30 16 LS Contribution 363.61 15.07 5.48 5.48 Total: -1.00 -33.63 363.61 -8.12 -41.75 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -5.26 Total: 11.65 kcal Atomic # 6 Polarization: 0.03 SS G_CDS: -3.65 Total: -3.62 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: 0.73 Total: -47.75 kcal Atomic # 8 Polarization: -21.53 SS G_CDS: 0.17 Total: -21.36 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.15 Total: 17.26 kcal Atomic # 17 Polarization: -1.96 SS G_CDS: -1.45 Total: -3.40 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.63 -8.12 -41.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455700334.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.351 kcal (2) G-P(sol) polarization free energy of solvation -33.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -64.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds