Wall clock time and date at job start Tue Mar 31 2020 22:53:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47483 * 2 1 4 4 C 1.52993 * 109.47483 * 179.97438 * 3 2 1 5 5 H 1.09003 * 109.47334 * 54.99972 * 4 3 2 6 6 N 1.46510 * 109.47065 * 295.00100 * 4 3 2 7 7 C 1.34777 * 119.99607 * 155.00131 * 6 4 3 8 8 O 1.21578 * 120.00421 * 359.97438 * 7 6 4 9 9 N 1.34779 * 119.99797 * 180.02562 * 7 6 4 10 10 C 1.39271 * 120.00052 * 175.32023 * 9 7 6 11 11 C 1.39461 * 119.83961 * 34.43721 * 10 9 7 12 12 C 1.36379 * 120.17809 * 179.71983 * 11 10 9 13 13 C 1.40888 * 119.84782 * 0.56565 * 12 11 10 14 14 C 1.41154 * 120.15723 * 179.72392 * 13 12 11 15 15 H 1.07998 * 120.00136 * 148.71894 * 14 13 12 16 16 C 1.39895 * 119.99719 * 328.72368 * 14 13 12 17 17 N 1.30888 * 119.99401 * 167.72499 * 16 14 13 18 18 Si 1.86796 * 120.00081 * 347.72068 * 16 14 13 19 19 H 1.48498 * 109.47156 * 92.59468 * 18 16 14 20 20 H 1.48505 * 109.46804 * 212.58656 * 18 16 14 21 21 H 1.48496 * 109.47418 * 332.58872 * 18 16 14 22 22 C 1.40842 * 119.68268 * 359.70650 * 13 12 11 23 23 C 1.36473 * 119.82086 * 359.97438 * 22 13 12 24 24 Cl 1.73594 * 119.92518 * 180.02562 * 23 22 13 25 25 C 1.50701 * 109.47230 * 175.00330 * 4 3 2 26 26 N 1.34776 * 119.99838 * 299.99854 * 25 4 3 27 27 O 1.21274 * 119.99937 * 120.00103 * 25 4 3 28 28 H 1.09003 * 109.47142 * 60.00159 * 1 2 3 29 29 H 1.09001 * 109.47102 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47252 * 300.00244 * 1 2 3 31 31 H 1.09004 * 109.47418 * 240.00277 * 2 1 3 32 32 H 1.09002 * 109.47383 * 120.00331 * 2 1 3 33 33 H 1.09004 * 109.46567 * 59.99756 * 3 2 1 34 34 H 1.09002 * 109.47081 * 300.00516 * 3 2 1 35 35 H 0.96991 * 119.99619 * 335.00014 * 6 4 3 36 36 H 0.97007 * 119.99476 * 355.32280 * 9 7 6 37 37 H 1.08001 * 119.90811 * 359.97438 * 11 10 9 38 38 H 1.08004 * 120.07018 * 180.27086 * 12 11 10 39 39 H 0.97003 * 119.99371 * 179.97438 * 17 16 14 40 40 H 1.08007 * 120.08600 * 180.02562 * 22 13 12 41 41 H 0.97000 * 120.00020 * 359.97438 * 26 25 4 42 42 H 0.96993 * 119.99831 * 180.02562 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9337 0.8529 -0.8409 6 7 4.0578 0.8589 1.2528 7 6 5.2798 0.2924 1.3011 8 8 5.9771 0.2652 0.3055 9 7 5.7283 -0.2450 2.4529 10 6 6.9484 -0.9160 2.4795 11 6 7.9968 -0.4823 1.6684 12 6 9.1963 -1.1308 1.6932 13 6 9.3716 -2.2491 2.5321 14 6 10.6085 -2.9287 2.5585 15 1 10.9424 -3.4071 3.4674 16 6 11.4017 -2.9824 1.4075 17 7 12.6413 -3.3952 1.4859 18 14 10.6919 -2.4652 -0.2411 19 1 10.9818 -1.0278 -0.4758 20 1 11.3072 -3.2771 -1.3216 21 1 9.2225 -2.6795 -0.2365 22 6 8.3069 -2.6853 3.3444 23 6 7.1143 -2.0226 3.3140 24 17 5.8005 -2.5575 4.3145 25 6 4.0724 2.8579 -0.1231 26 7 3.7473 3.5964 -1.2026 27 8 4.7693 3.3324 0.7487 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.6766 1.9563 0.8900 34 1 1.6766 1.9564 -0.8900 35 1 3.5013 0.8803 2.0469 36 1 5.2013 -0.1643 3.2633 37 1 7.8596 0.3720 1.0221 38 1 10.0083 -0.7907 1.0676 39 1 13.1913 -3.4328 0.6877 40 1 8.4343 -3.5416 3.9902 41 1 3.1902 3.2167 -1.9001 42 1 4.0709 4.5072 -1.2825 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455700334.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:28 Heat of formation + Delta-G solvation = -89.780861 kcal Electronic energy + Delta-G solvation = -26964.665611 eV Core-core repulsion = 22968.738705 eV Total energy + Delta-G solvation = -3995.926906 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.82571 -40.61383 -39.45187 -37.39233 -37.20142 -36.10695 -35.08066 -34.72301 -34.22546 -31.63750 -31.57949 -29.96309 -26.79155 -25.61751 -23.76504 -23.35339 -22.21121 -21.87047 -21.38452 -19.76967 -19.43374 -18.88605 -18.30121 -17.93060 -17.23265 -16.50962 -16.43039 -16.12416 -15.97737 -15.70373 -15.57173 -15.25955 -14.95084 -14.71669 -14.50028 -14.33216 -14.21091 -14.15017 -13.37252 -13.35044 -12.88576 -12.79202 -12.62293 -12.39484 -12.24677 -12.17802 -12.00699 -11.80835 -11.70228 -11.54479 -11.33956 -11.31373 -11.06263 -10.81406 -10.66617 -10.14767 -9.58349 -8.99698 -8.93255 -6.50782 0.46021 0.63982 1.22023 1.24854 1.35327 1.45480 1.57121 1.61053 2.02832 2.08858 2.49648 2.67990 3.21633 3.34924 3.66085 3.89287 4.03518 4.11444 4.25779 4.36379 4.40483 4.63464 4.71473 4.74293 4.77181 4.89882 4.93135 5.00771 5.11496 5.24781 5.31189 5.34887 5.39033 5.41319 5.51153 5.71069 5.80802 5.88463 5.93613 6.04710 6.26494 6.43132 6.56429 6.73698 6.99051 7.32598 7.53797 8.13756 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.012785 B = 0.003388 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2189.456146 B = 8262.137018 C = 9462.785157 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.125 4.125 3 C -0.109 4.109 4 C 0.146 3.854 5 H 0.110 0.890 6 N -0.708 5.708 7 C 0.703 3.297 8 O -0.617 6.617 9 N -0.658 5.658 10 C 0.048 3.952 11 C -0.067 4.067 12 C -0.232 4.232 13 C 0.078 3.922 14 C -0.466 4.466 15 H 0.071 0.929 16 C 0.055 3.945 17 N -0.842 5.842 18 Si 0.957 3.043 19 H -0.266 1.266 20 H -0.274 1.274 21 H -0.259 1.259 22 C -0.189 4.189 23 C -0.004 4.004 24 Cl -0.069 7.069 25 C 0.498 3.502 26 N -0.833 5.833 27 O -0.586 6.586 28 H 0.065 0.935 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.085 0.915 34 H 0.113 0.887 35 H 0.413 0.587 36 H 0.413 0.587 37 H 0.119 0.881 38 H 0.102 0.898 39 H 0.295 0.705 40 H 0.125 0.875 41 H 0.419 0.581 42 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.188 9.675 -5.494 28.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.162 4.162 3 C -0.147 4.147 4 C 0.037 3.963 5 H 0.128 0.872 6 N -0.363 5.363 7 C 0.404 3.596 8 O -0.497 6.497 9 N -0.306 5.306 10 C -0.047 4.047 11 C -0.088 4.088 12 C -0.251 4.251 13 C 0.075 3.925 14 C -0.495 4.495 15 H 0.089 0.911 16 C -0.161 4.161 17 N -0.469 5.469 18 Si 0.783 3.217 19 H -0.192 1.192 20 H -0.200 1.200 21 H -0.183 1.183 22 C -0.210 4.210 23 C -0.033 4.033 24 Cl -0.041 7.041 25 C 0.281 3.719 26 N -0.398 5.398 27 O -0.465 6.465 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.103 0.897 34 H 0.131 0.869 35 H 0.250 0.750 36 H 0.250 0.750 37 H 0.137 0.863 38 H 0.119 0.881 39 H 0.106 0.894 40 H 0.143 0.857 41 H 0.251 0.749 42 H 0.238 0.762 Dipole moment (debyes) X Y Z Total from point charges -25.051 9.649 -5.742 27.452 hybrid contribution -0.001 0.285 -0.044 0.289 sum -25.052 9.934 -5.786 27.563 Atomic orbital electron populations 1.21743 0.94330 1.02016 1.02590 1.21523 0.96830 0.95402 1.02493 1.21900 0.87882 0.99206 1.05681 1.20963 0.97216 0.89837 0.88328 0.87235 1.44542 1.15850 1.61504 1.14428 1.16037 0.82205 0.78247 0.83078 1.90869 1.57718 1.65075 1.36064 1.41796 1.20477 1.57573 1.10754 1.16633 0.86527 0.96368 1.05217 1.20542 0.91095 0.99224 0.97891 1.20871 0.97928 0.99520 1.06808 1.17738 0.92510 0.90899 0.91352 1.19405 1.00638 1.30634 0.98832 0.91094 1.26634 0.93847 0.91893 1.03722 1.69682 1.07220 1.36523 1.33437 0.85623 0.80228 0.78448 0.77444 1.19185 1.20037 1.18280 1.20692 0.91295 1.02413 1.06577 1.20244 0.90276 0.95098 0.97680 1.98274 1.47969 1.89611 1.68217 1.21598 0.79168 0.89293 0.81795 1.43667 1.55268 1.17954 1.22897 1.90748 1.39392 1.73802 1.42607 0.91545 0.92903 0.92196 0.91901 0.92453 0.89659 0.86857 0.74989 0.75011 0.86345 0.88065 0.89386 0.85674 0.74946 0.76212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 71.98 0.71 -0.38 16 2 C -0.12 -1.24 5.82 30.59 0.18 -1.06 16 3 C -0.11 -0.93 4.70 30.59 0.14 -0.79 16 4 C 0.15 2.67 2.38 44.24 0.11 2.78 16 5 H 0.11 2.24 7.58 -2.39 -0.02 2.23 16 6 N -0.71 -16.32 4.06 -461.40 -1.88 -18.19 16 7 C 0.70 23.98 8.23 179.05 1.47 25.46 16 8 O -0.62 -26.42 13.36 -3.96 -0.05 -26.48 16 9 N -0.66 -22.18 5.03 -316.70 -1.59 -23.77 16 10 C 0.05 2.02 6.32 38.58 0.24 2.27 16 11 C -0.07 -3.19 8.62 22.13 0.19 -3.00 16 12 C -0.23 -11.71 6.94 22.48 0.16 -11.56 16 13 C 0.08 4.04 5.13 -21.28 -0.11 3.93 16 14 C -0.47 -25.85 9.59 23.39 0.22 -25.63 16 15 H 0.07 4.13 8.06 -2.91 -0.02 4.11 16 16 C 0.05 2.95 5.47 85.23 0.47 3.42 16 17 N -0.84 -46.13 13.93 21.82 0.30 -45.82 16 18 Si 0.96 45.08 24.40 68.60 1.67 46.75 16 19 H -0.27 -12.24 6.66 99.48 0.66 -11.58 16 20 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 21 H -0.26 -12.82 6.67 99.48 0.66 -12.16 16 22 C -0.19 -8.67 9.50 22.49 0.21 -8.45 16 23 C 0.00 -0.16 6.30 22.18 0.14 -0.02 16 24 Cl -0.07 -2.18 27.91 -2.72 -0.08 -2.26 16 25 C 0.50 11.04 7.46 87.66 0.65 11.69 16 26 N -0.83 -9.99 8.74 -173.54 -1.52 -11.50 16 27 O -0.59 -19.71 17.16 -3.01 -0.05 -19.76 16 28 H 0.07 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.06 0.71 7.75 -2.39 -0.02 0.70 16 33 H 0.08 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.11 0.33 7.43 -2.39 -0.02 0.31 16 35 H 0.41 6.98 8.62 -92.71 -0.80 6.18 16 36 H 0.41 11.09 8.06 -92.70 -0.75 10.34 16 37 H 0.12 5.81 6.14 -2.91 -0.02 5.80 16 38 H 0.10 5.17 4.41 -2.91 -0.01 5.16 16 39 H 0.30 14.60 8.30 -92.71 -0.77 13.83 16 40 H 0.13 5.42 8.06 -2.91 -0.02 5.40 16 41 H 0.42 1.76 8.19 -92.71 -0.76 1.00 16 42 H 0.41 4.48 8.93 -92.71 -0.83 3.65 16 Total: -1.00 -75.72 363.61 -0.49 -76.22 By element: Atomic # 1 Polarization: 28.26 SS G_CDS: -2.10 Total: 26.16 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: 4.79 Total: -1.34 kcal Atomic # 7 Polarization: -94.61 SS G_CDS: -4.68 Total: -99.29 kcal Atomic # 8 Polarization: -46.13 SS G_CDS: -0.10 Total: -46.24 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 1.67 Total: 46.75 kcal Atomic # 17 Polarization: -2.18 SS G_CDS: -0.08 Total: -2.26 kcal Total: -75.72 -0.49 -76.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455700334.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.565 kcal (2) G-P(sol) polarization free energy of solvation -75.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.216 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds