Wall clock time and date at job start Tue Mar 31 2020 22:53:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.46994 * 2 1 4 4 C 1.52997 * 109.47208 * 120.00247 * 2 1 3 5 5 N 1.46497 * 109.47242 * 300.00163 * 4 2 1 6 6 C 1.34778 * 119.99998 * 180.02562 * 5 4 2 7 7 O 1.21582 * 120.00122 * 359.97438 * 6 5 4 8 8 N 1.34774 * 119.99826 * 180.27140 * 6 5 4 9 9 C 1.39282 * 119.99821 * 175.46702 * 8 6 5 10 10 C 1.39467 * 119.83300 * 34.74351 * 9 8 6 11 11 C 1.36381 * 120.17235 * 179.71441 * 10 9 8 12 12 C 1.40885 * 119.85079 * 0.55137 * 11 10 9 13 13 C 1.41151 * 120.15987 * 179.74118 * 12 11 10 14 14 H 1.08003 * 119.99631 * 34.75318 * 13 12 11 15 15 C 1.39891 * 120.00371 * 214.75435 * 13 12 11 16 16 N 1.30881 * 119.99830 * 355.59017 * 15 13 12 17 17 Si 1.86801 * 120.00243 * 175.59042 * 15 13 12 18 18 H 1.48500 * 109.47014 * 89.99936 * 17 15 13 19 19 H 1.48499 * 109.46820 * 209.99770 * 17 15 13 20 20 H 1.48498 * 109.47207 * 330.00038 * 17 15 13 21 21 C 1.40841 * 119.68353 * 359.72325 * 12 11 10 22 22 C 1.36479 * 119.81800 * 359.97438 * 21 12 11 23 23 Cl 1.73600 * 119.92406 * 179.97438 * 22 21 12 24 24 C 1.50703 * 109.46867 * 240.00508 * 2 1 3 25 25 N 1.34778 * 120.00176 * 59.99516 * 24 2 1 26 26 O 1.21282 * 120.00007 * 239.99787 * 24 2 1 27 27 H 1.09001 * 109.46983 * 299.99779 * 1 2 3 28 28 H 1.08998 * 109.47245 * 59.99644 * 1 2 3 29 29 H 1.08997 * 109.47152 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46758 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47416 * 300.00252 * 3 2 1 32 32 H 1.08996 * 109.46852 * 60.00704 * 3 2 1 33 33 H 1.09000 * 109.46792 * 179.97438 * 4 2 1 34 34 H 1.09003 * 109.47224 * 60.00376 * 4 2 1 35 35 H 0.96994 * 119.99871 * 359.97438 * 5 4 2 36 36 H 0.97001 * 120.00483 * 355.47609 * 8 6 5 37 37 H 1.07997 * 119.91426 * 359.97005 * 10 9 8 38 38 H 1.08005 * 120.07354 * 180.24317 * 11 10 9 39 39 H 0.96993 * 120.00399 * 180.02562 * 16 15 13 40 40 H 1.08000 * 120.09218 * 180.02562 * 21 12 11 41 41 H 0.96994 * 120.00131 * 0.02562 * 25 24 2 42 42 H 0.97002 * 119.99639 * 179.97438 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.5517 -0.0308 2.4454 6 6 1.8778 -0.4910 3.6694 7 8 2.5768 -1.4795 3.7810 8 7 1.4240 0.1410 4.7699 9 6 1.6816 -0.3875 6.0325 10 6 2.8877 -1.0437 6.2772 11 6 3.1495 -1.5587 7.5125 12 6 2.1934 -1.4370 8.5401 13 6 2.4553 -1.9724 9.8196 14 1 3.4605 -1.9606 10.2144 15 6 1.4131 -2.5184 10.5762 16 7 0.1821 -2.4554 10.1359 17 14 1.7780 -3.3374 12.2150 18 1 1.7046 -2.3268 13.3006 19 1 0.7798 -4.4076 12.4666 20 1 3.1398 -3.9287 12.1805 21 6 0.9750 -0.7782 8.2847 22 6 0.7293 -0.2623 7.0453 23 17 -0.7717 0.5497 6.7272 24 6 2.0323 -0.7103 -1.2306 25 7 1.7066 -0.2498 -2.4547 26 8 2.7296 -1.6964 -1.1194 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 3.1300 1.4425 -0.0005 31 1 1.6766 1.9564 -0.8899 32 1 1.6767 1.9562 0.8900 33 1 3.1300 -0.7216 1.2489 34 1 1.6768 -1.7490 1.2491 35 1 0.9944 0.7580 2.3564 36 1 0.9179 0.9639 4.6826 37 1 3.6179 -1.1406 5.4874 38 1 4.0857 -2.0631 7.7013 39 1 -0.5406 -2.8336 10.6606 40 1 0.2376 -0.6808 9.0677 41 1 1.1492 0.5390 -2.5436 42 1 2.0303 -0.7069 -3.2467 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455704786.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:41 Heat of formation + Delta-G solvation = -62.740149 kcal Electronic energy + Delta-G solvation = -26519.017520 eV Core-core repulsion = 22524.263187 eV Total energy + Delta-G solvation = -3994.754333 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.64028 -39.72611 -37.74637 -36.41003 -35.48613 -34.44741 -34.14281 -33.13293 -32.41879 -29.40748 -28.95292 -27.82665 -26.66945 -24.93672 -23.49594 -21.77563 -20.95918 -20.23670 -19.59340 -18.42246 -17.56742 -17.32160 -16.83833 -16.51772 -15.66337 -15.36559 -14.97874 -14.87627 -14.53772 -14.26160 -14.09731 -13.87929 -13.65889 -13.31909 -12.90762 -12.71633 -12.60092 -12.50649 -12.33418 -12.13920 -11.62469 -11.50579 -11.37398 -11.27628 -11.11684 -10.90998 -10.55668 -10.30139 -10.13926 -10.05996 -10.01864 -9.72897 -9.54164 -9.27073 -8.97714 -8.86276 -7.50212 -6.94446 -6.67504 -4.41914 2.29522 2.48862 2.79717 2.90281 3.07923 3.09603 3.14493 3.19810 3.34181 3.70127 3.94905 4.15374 4.34928 4.41801 4.61149 4.63049 4.70197 5.07575 5.25794 5.28107 5.35564 5.49025 5.63186 5.67009 5.82448 5.90627 6.24057 6.39314 6.53187 6.57320 6.70902 6.89855 6.91825 7.02929 7.14271 7.28280 7.39584 7.73277 7.74970 7.89848 7.96897 8.15618 8.41280 8.48070 8.79761 8.84370 9.05970 10.23048 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.022847 B = 0.002403 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.247622 B =11649.454451 C =12345.961220 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.096 4.096 3 C -0.141 4.141 4 C 0.165 3.835 5 N -0.750 5.750 6 C 0.698 3.302 7 O -0.573 6.573 8 N -0.666 5.666 9 C 0.034 3.966 10 C -0.076 4.076 11 C -0.200 4.200 12 C 0.106 3.894 13 C -0.456 4.456 14 H 0.080 0.920 15 C 0.069 3.931 16 N -0.806 5.806 17 Si 0.918 3.082 18 H -0.269 1.269 19 H -0.277 1.277 20 H -0.262 1.262 21 C -0.135 4.135 22 C -0.024 4.024 23 Cl -0.122 7.122 24 C 0.531 3.469 25 N -0.854 5.854 26 O -0.532 6.532 27 H 0.072 0.928 28 H 0.062 0.938 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.390 0.610 36 H 0.393 0.607 37 H 0.120 0.880 38 H 0.103 0.897 39 H 0.280 0.720 40 H 0.144 0.856 41 H 0.400 0.600 42 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.911 10.257 -19.222 21.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.100 4.100 3 C -0.199 4.199 4 C 0.040 3.960 5 N -0.408 5.408 6 C 0.399 3.601 7 O -0.450 6.450 8 N -0.312 5.312 9 C -0.060 4.060 10 C -0.096 4.096 11 C -0.220 4.220 12 C 0.103 3.897 13 C -0.486 4.486 14 H 0.098 0.902 15 C -0.147 4.147 16 N -0.433 5.433 17 Si 0.742 3.258 18 H -0.195 1.195 19 H -0.202 1.202 20 H -0.186 1.186 21 C -0.156 4.156 22 C -0.052 4.052 23 Cl -0.094 7.094 24 C 0.315 3.685 25 N -0.418 5.418 26 O -0.407 6.407 27 H 0.091 0.909 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.093 0.907 35 H 0.225 0.775 36 H 0.227 0.773 37 H 0.138 0.862 38 H 0.121 0.879 39 H 0.091 0.909 40 H 0.161 0.839 41 H 0.229 0.771 42 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges -2.197 8.687 -18.832 20.855 hybrid contribution -0.907 0.607 0.081 1.094 sum -3.104 9.294 -18.751 21.157 Atomic orbital electron populations 1.21891 0.91739 1.03446 1.02887 1.21003 0.97966 0.97238 0.93787 1.21887 1.02254 0.92881 1.02884 1.20838 0.99551 0.95430 0.80210 1.45080 1.57634 1.33641 1.04455 1.15910 0.81187 0.82941 0.80105 1.90926 1.41630 1.27149 1.85259 1.42016 1.58408 1.27049 1.03739 1.16695 0.95416 1.11059 0.82876 1.20437 0.94278 0.98031 0.96865 1.20910 1.01531 1.06852 0.92676 1.17600 0.90435 0.88760 0.92947 1.19478 0.95511 1.33900 0.99754 0.90179 1.25916 0.94476 0.95132 0.99194 1.69738 1.00160 1.36207 1.37145 0.86153 0.79386 0.79192 0.81039 1.19455 1.20242 1.18634 1.21182 1.00755 0.99262 0.94402 1.20400 0.85037 1.03344 0.96443 1.98242 1.35583 1.79439 1.96107 1.20276 0.79389 0.83927 0.84908 1.43820 1.56137 1.33868 1.07965 1.90809 1.37210 1.25955 1.86729 0.90945 0.91867 0.91452 0.91494 0.91858 0.90987 0.90782 0.90747 0.77523 0.77256 0.86200 0.87909 0.90858 0.83862 0.77093 0.76696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 8.20 37.16 0.30 -0.56 16 2 C -0.10 -0.76 0.63 -155.66 -0.10 -0.86 16 3 C -0.14 -0.81 8.20 37.16 0.30 -0.50 16 4 C 0.16 2.04 3.85 -4.05 -0.02 2.03 16 5 N -0.75 -9.37 4.96 -65.23 -0.32 -9.69 16 6 C 0.70 12.52 8.40 -86.92 -0.73 11.79 16 7 O -0.57 -12.90 13.73 5.29 0.07 -12.83 16 8 N -0.67 -11.90 5.02 -14.07 -0.07 -11.97 16 9 C 0.03 0.75 6.32 -83.52 -0.53 0.22 16 10 C -0.08 -1.79 8.61 -39.79 -0.34 -2.13 16 11 C -0.20 -4.92 9.74 -39.25 -0.38 -5.30 16 12 C 0.11 2.77 5.55 -106.81 -0.59 2.17 16 13 C -0.46 -11.84 9.02 -37.86 -0.34 -12.18 16 14 H 0.08 1.98 7.85 -52.48 -0.41 1.57 16 15 C 0.07 1.71 5.42 -17.34 -0.09 1.61 16 16 N -0.81 -20.70 10.59 55.54 0.59 -20.11 16 17 Si 0.92 18.73 29.56 -169.99 -5.03 13.70 16 18 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 19 H -0.28 -5.60 7.11 56.52 0.40 -5.20 16 20 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16 21 C -0.14 -3.44 8.38 -39.23 -0.33 -3.77 16 22 C -0.02 -0.54 6.30 -39.72 -0.25 -0.79 16 23 Cl -0.12 -2.32 27.92 -51.86 -1.45 -3.77 16 24 C 0.53 4.95 6.75 -10.98 -0.07 4.88 16 25 N -0.85 -4.16 8.66 31.22 0.27 -3.89 16 26 O -0.53 -7.66 16.82 5.56 0.09 -7.56 16 27 H 0.07 0.42 6.86 -51.93 -0.36 0.06 16 28 H 0.06 0.23 7.56 -51.93 -0.39 -0.17 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.06 0.21 7.56 -51.93 -0.39 -0.19 16 32 H 0.07 0.38 6.86 -51.93 -0.36 0.02 16 33 H 0.07 1.06 8.10 -51.93 -0.42 0.64 16 34 H 0.07 1.11 8.10 -51.93 -0.42 0.68 16 35 H 0.39 3.53 6.18 -40.82 -0.25 3.28 16 36 H 0.39 5.80 8.07 -40.82 -0.33 5.47 16 37 H 0.12 2.82 6.18 -52.49 -0.32 2.50 16 38 H 0.10 2.38 8.06 -52.48 -0.42 1.96 16 39 H 0.28 6.62 8.30 -40.82 -0.34 6.28 16 40 H 0.14 3.80 6.13 -52.49 -0.32 3.48 16 41 H 0.40 0.75 7.67 -40.82 -0.31 0.43 16 42 H 0.40 1.66 8.93 -40.82 -0.36 1.30 16 LS Contribution 362.64 15.07 5.46 5.46 Total: -1.00 -33.11 362.64 -8.60 -41.72 By element: Atomic # 1 Polarization: 17.41 SS G_CDS: -5.06 Total: 12.35 kcal Atomic # 6 Polarization: -0.24 SS G_CDS: -3.17 Total: -3.40 kcal Atomic # 7 Polarization: -46.13 SS G_CDS: 0.46 Total: -45.66 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: 0.17 Total: -20.40 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -5.03 Total: 13.70 kcal Atomic # 17 Polarization: -2.32 SS G_CDS: -1.45 Total: -3.77 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -33.11 -8.60 -41.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455704786.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.025 kcal (2) G-P(sol) polarization free energy of solvation -33.111 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.136 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds