Wall clock time and date at job start Tue Mar 31 2020 22:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47163 * 2 1 4 4 C 1.53003 * 109.47547 * 119.99824 * 2 1 3 5 5 H 1.08994 * 109.47278 * 179.89554 * 4 2 1 6 6 N 1.46503 * 109.47159 * 299.89845 * 4 2 1 7 7 C 1.34772 * 120.00225 * 205.00148 * 6 4 2 8 8 O 1.21582 * 119.99858 * 359.97438 * 7 6 4 9 9 N 1.34775 * 120.00069 * 180.02562 * 7 6 4 10 10 C 1.39272 * 120.00109 * 175.95186 * 9 7 6 11 11 C 1.39474 * 119.83915 * 30.71166 * 10 9 7 12 12 C 1.36375 * 120.17748 * 179.72173 * 11 10 9 13 13 C 1.40887 * 119.85066 * 0.57427 * 12 11 10 14 14 C 1.41155 * 120.16124 * 179.72132 * 13 12 11 15 15 H 1.07995 * 119.99697 * 26.08989 * 14 13 12 16 16 C 1.39891 * 119.99842 * 206.09311 * 14 13 12 17 17 N 1.30872 * 120.00219 * 13.24931 * 16 14 13 18 18 Si 1.86803 * 119.99591 * 193.24532 * 16 14 13 19 19 H 1.48508 * 109.47052 * 59.99899 * 18 16 14 20 20 H 1.48499 * 109.47301 * 179.97438 * 18 16 14 21 21 H 1.48500 * 109.47279 * 300.00091 * 18 16 14 22 22 C 1.40846 * 119.68344 * 359.70499 * 13 12 11 23 23 C 1.36472 * 119.81847 * 359.97438 * 22 13 12 24 24 Cl 1.73598 * 119.92999 * 180.02562 * 23 22 13 25 25 C 1.50698 * 109.46770 * 59.89272 * 4 2 1 26 26 N 1.34777 * 119.99802 * 80.01577 * 25 4 2 27 27 O 1.21281 * 120.00411 * 259.73397 * 25 4 2 28 28 H 1.08995 * 109.47202 * 300.00008 * 1 2 3 29 29 H 1.09003 * 109.47032 * 60.00153 * 1 2 3 30 30 H 1.09001 * 109.46412 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47385 * 240.00443 * 2 1 3 32 32 H 1.08996 * 109.47552 * 184.27557 * 3 2 1 33 33 H 1.08997 * 109.46648 * 304.27321 * 3 2 1 34 34 H 1.09002 * 109.46915 * 64.27240 * 3 2 1 35 35 H 0.97003 * 119.99638 * 24.99273 * 6 4 2 36 36 H 0.97000 * 120.00094 * 355.94541 * 9 7 6 37 37 H 1.07996 * 119.90676 * 0.02562 * 11 10 9 38 38 H 1.08000 * 120.07600 * 180.27431 * 12 11 10 39 39 H 0.97005 * 120.00017 * 180.02562 * 17 16 14 40 40 H 1.07997 * 120.09436 * 180.02562 * 22 13 12 41 41 H 0.96999 * 119.99697 * 185.00707 * 26 25 4 42 42 H 0.97000 * 120.00262 * 4.99869 * 26 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0401 -0.7212 1.2493 5 1 3.1300 -0.7228 1.2483 6 7 1.5538 -0.0292 2.4455 7 6 2.2315 -0.1321 3.6059 8 8 3.2462 -0.7997 3.6601 9 7 1.7838 0.5041 4.7064 10 6 2.4357 0.3304 5.9248 11 6 3.8079 0.0819 5.9485 12 6 4.4542 -0.0837 7.1379 13 6 3.7304 -0.0154 8.3447 14 6 4.3917 -0.1917 9.5793 15 1 5.4435 0.0374 9.6659 16 6 3.6846 -0.6632 10.6904 17 7 2.4938 -1.1836 10.5356 18 14 4.4403 -0.5502 12.3950 19 1 4.7147 0.8723 12.7215 20 1 3.4963 -1.1135 13.3933 21 1 5.7105 -1.3189 12.4254 22 6 2.3439 0.2300 8.3135 23 6 1.7116 0.4003 7.1161 24 17 0.0028 0.7036 7.0743 25 6 1.5356 -2.1412 1.2506 26 7 2.1521 -3.0761 0.5005 27 8 0.5780 -2.4440 1.9305 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3632 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 3.1273 1.4436 -0.0766 33 1 1.6155 1.9779 -0.8492 34 1 1.7405 1.9338 0.9258 35 1 0.7441 0.5033 2.4022 36 1 1.0076 1.0832 4.6499 37 1 4.3609 0.0253 5.0226 38 1 5.5176 -0.2717 7.1545 39 1 2.0034 -1.5103 11.3062 40 1 1.7826 0.2842 9.2346 41 1 1.7850 -3.9721 0.4442 42 1 2.9627 -2.8528 0.0170 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455709250.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:53:32 Heat of formation + Delta-G solvation = -60.813891 kcal Electronic energy + Delta-G solvation = -27111.622557 eV Core-core repulsion = 23116.951753 eV Total energy + Delta-G solvation = -3994.670804 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 339.114 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.62637 -39.26734 -37.59518 -36.46308 -35.45743 -34.39823 -33.73938 -33.22680 -32.56924 -29.38495 -29.03008 -27.54287 -27.34027 -24.91442 -22.07061 -21.64875 -21.11237 -20.30948 -19.79299 -18.22322 -17.75705 -17.39672 -16.85610 -16.54113 -15.43456 -15.20903 -15.15741 -14.81955 -14.37186 -14.26281 -14.04909 -13.92945 -13.42586 -13.25027 -12.91549 -12.73115 -12.46345 -12.39346 -12.27200 -11.74870 -11.54235 -11.26965 -11.22396 -11.17542 -11.12199 -10.93496 -10.58464 -10.35949 -10.18828 -10.02575 -9.74023 -9.71812 -9.55320 -9.27255 -8.95422 -8.89120 -7.48073 -7.01518 -6.75746 -4.37726 2.52997 2.55552 2.85893 2.91589 3.06204 3.07862 3.11371 3.24566 3.45882 3.76973 3.90658 4.37410 4.52116 4.53480 4.58140 4.68104 4.94124 5.17330 5.24083 5.36745 5.53892 5.55216 5.57826 5.67869 5.95003 5.96407 6.24659 6.43451 6.57075 6.68929 6.73073 6.91362 7.02958 7.13490 7.23160 7.26721 7.38528 7.74151 7.75343 7.95510 8.14748 8.21544 8.42105 8.46044 8.79368 8.80566 9.04056 10.14772 Molecular weight = 339.11amu Principal moments of inertia in cm(-1) A = 0.019495 B = 0.002816 C = 0.002719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1435.909625 B = 9939.053341 C =10295.124054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.095 4.095 3 C -0.146 4.146 4 C 0.154 3.846 5 H 0.111 0.889 6 N -0.726 5.726 7 C 0.703 3.297 8 O -0.579 6.579 9 N -0.659 5.659 10 C 0.023 3.977 11 C -0.074 4.074 12 C -0.211 4.211 13 C 0.110 3.890 14 C -0.452 4.452 15 H 0.081 0.919 16 C 0.071 3.929 17 N -0.791 5.791 18 Si 0.913 3.087 19 H -0.263 1.263 20 H -0.278 1.278 21 H -0.265 1.265 22 C -0.144 4.144 23 C -0.019 4.019 24 Cl -0.121 7.121 25 C 0.508 3.492 26 N -0.856 5.856 27 O -0.529 6.529 28 H 0.059 0.941 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.089 0.911 32 H 0.060 0.940 33 H 0.060 0.940 34 H 0.062 0.938 35 H 0.397 0.603 36 H 0.395 0.605 37 H 0.125 0.875 38 H 0.101 0.899 39 H 0.283 0.717 40 H 0.137 0.863 41 H 0.399 0.601 42 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.494 3.425 -19.197 19.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.114 4.114 3 C -0.204 4.204 4 C 0.043 3.957 5 H 0.129 0.871 6 N -0.383 5.383 7 C 0.404 3.596 8 O -0.457 6.457 9 N -0.305 5.305 10 C -0.071 4.071 11 C -0.094 4.094 12 C -0.231 4.231 13 C 0.106 3.894 14 C -0.482 4.482 15 H 0.100 0.900 16 C -0.147 4.147 17 N -0.416 5.416 18 Si 0.738 3.262 19 H -0.188 1.188 20 H -0.203 1.203 21 H -0.189 1.189 22 C -0.165 4.165 23 C -0.047 4.047 24 Cl -0.093 7.093 25 C 0.290 3.710 26 N -0.421 5.421 27 O -0.403 6.403 28 H 0.078 0.922 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.079 0.921 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.233 0.767 36 H 0.229 0.771 37 H 0.143 0.857 38 H 0.119 0.881 39 H 0.094 0.906 40 H 0.154 0.846 41 H 0.230 0.770 42 H 0.228 0.772 Dipole moment (debyes) X Y Z Total from point charges -2.565 2.716 -18.492 18.866 hybrid contribution -0.502 -0.007 0.512 0.717 sum -3.067 2.709 -17.981 18.441 Atomic orbital electron populations 1.21905 0.94219 1.02734 1.02207 1.21344 0.97024 0.97372 0.95705 1.21831 1.01454 0.94587 1.02512 1.20642 1.00904 0.88434 0.85702 0.87132 1.44738 1.30351 1.54855 1.08389 1.15883 0.83552 0.80023 0.80190 1.90861 1.25704 1.45312 1.83794 1.41942 1.33300 1.48525 1.06704 1.16669 0.91201 1.17919 0.81329 1.20524 0.91325 0.99126 0.98399 1.20779 0.99089 1.11335 0.91893 1.17548 0.90914 0.88289 0.92622 1.19515 0.97270 1.37994 0.93378 0.90045 1.25959 0.94585 0.92618 1.01498 1.69797 1.11547 1.27274 1.32983 0.86279 0.79708 0.79740 0.80507 1.18774 1.20287 1.18949 1.20947 0.95775 1.04717 0.95049 1.20315 0.81210 1.08641 0.94578 1.98247 1.17207 1.94987 1.98849 1.21235 0.83081 0.88297 0.78364 1.43839 1.31049 1.14707 1.52483 1.90758 1.27864 1.81873 1.39815 0.92227 0.91929 0.92084 0.89316 0.92102 0.92055 0.91934 0.76703 0.77129 0.85722 0.88091 0.90562 0.84553 0.77001 0.77207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.19 8.77 37.16 0.33 -0.87 16 2 C -0.10 -0.70 2.76 -90.62 -0.25 -0.95 16 3 C -0.15 -0.98 9.10 37.16 0.34 -0.64 16 4 C 0.15 1.71 2.12 -69.08 -0.15 1.57 16 5 H 0.11 1.24 7.58 -51.93 -0.39 0.85 16 6 N -0.73 -9.81 3.81 -59.81 -0.23 -10.04 16 7 C 0.70 12.96 8.38 -86.92 -0.73 12.23 16 8 O -0.58 -12.62 13.15 5.29 0.07 -12.55 16 9 N -0.66 -12.49 5.09 -14.07 -0.07 -12.56 16 10 C 0.02 0.53 6.39 -83.52 -0.53 -0.01 16 11 C -0.07 -1.75 8.65 -39.79 -0.34 -2.10 16 12 C -0.21 -5.23 9.74 -39.25 -0.38 -5.62 16 13 C 0.11 2.89 5.57 -106.80 -0.60 2.30 16 14 C -0.45 -11.76 9.05 -37.86 -0.34 -12.10 16 15 H 0.08 2.01 7.88 -52.49 -0.41 1.59 16 16 C 0.07 1.77 5.22 -17.34 -0.09 1.68 16 17 N -0.79 -20.39 10.79 55.54 0.60 -19.79 16 18 Si 0.91 18.47 29.58 -169.99 -5.03 13.45 16 19 H -0.26 -5.25 7.11 56.52 0.40 -4.85 16 20 H -0.28 -5.51 7.11 56.52 0.40 -5.10 16 21 H -0.26 -5.30 7.11 56.52 0.40 -4.90 16 22 C -0.14 -3.74 8.39 -39.23 -0.33 -4.07 16 23 C -0.02 -0.45 6.30 -39.72 -0.25 -0.70 16 24 Cl -0.12 -2.45 27.84 -51.86 -1.44 -3.89 16 25 C 0.51 6.62 6.15 -10.99 -0.07 6.55 16 26 N -0.86 -7.48 8.87 31.22 0.28 -7.20 16 27 O -0.53 -9.40 17.11 5.56 0.10 -9.31 16 28 H 0.06 0.49 6.51 -51.93 -0.34 0.15 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 30 H 0.06 0.58 7.01 -51.93 -0.36 0.22 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.48 7.32 -51.93 -0.38 0.10 16 35 H 0.40 4.52 6.67 -40.82 -0.27 4.25 16 36 H 0.39 6.41 7.93 -40.82 -0.32 6.08 16 37 H 0.13 2.91 5.87 -52.49 -0.31 2.61 16 38 H 0.10 2.35 8.06 -52.49 -0.42 1.92 16 39 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 40 H 0.14 3.65 6.09 -52.49 -0.32 3.33 16 41 H 0.40 3.16 8.93 -40.82 -0.36 2.80 16 42 H 0.40 2.20 8.83 -40.82 -0.36 1.83 16 LS Contribution 363.69 15.07 5.48 5.48 Total: -1.00 -33.26 363.69 -8.73 -41.99 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: -5.09 Total: 17.14 kcal Atomic # 6 Polarization: 0.68 SS G_CDS: -3.40 Total: -2.72 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: 0.58 Total: -49.59 kcal Atomic # 8 Polarization: -22.02 SS G_CDS: 0.16 Total: -21.86 kcal Atomic # 14 Polarization: 18.47 SS G_CDS: -5.03 Total: 13.45 kcal Atomic # 17 Polarization: -2.45 SS G_CDS: -1.44 Total: -3.89 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -33.26 -8.73 -41.99 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455709250.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.820 kcal (2) G-P(sol) polarization free energy of solvation -33.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.994 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.814 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds